Guide to the Human Genome
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Name: LOC100133779 Sequence: fasta or formatted (141aa) NCBI GI: 169216268
Description:

PREDICTED: similar to mitochondrial ribosomal protein S18C

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0          7           2
 C cysteine            4.3          6           1
 D aspartate           2.1          3           1
 E glutamate           3.5          5           1
 F phenylalanine       2.1          3           1
 G glycine             7.8         11           2
 H histidine           2.8          4           1
 I isoleucine          4.3          6           1
 K lysine             11.3         16           2
 L leucine             8.5         12           2
 M methionine          3.5          5           1
 N asparagine          2.8          4           1
 P proline             6.4          9           1
 Q glutamine           5.0          7           1
 R arginine            4.3          6           2
 S serine              5.7          8           2
 T threonine           6.4          9           1
 V valine              8.5         12           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to mitochondrial ribosomal prote... 
LOC100288560          1.000   PREDICTED: hypothetical protein XP_002344238 
LOC100294048          0.993   PREDICTED: similar to mitochondrial ribosomal prote...
MRPS18C               0.854   mitochondrial ribosomal protein S18C 
MRPS18B               0.086   mitochondrial ribosomal protein S18B 
MRPS18A               0.071   mitochondrial ribosomal protein S18A 
SSH2                  0.034   slingshot 2 
ZFP62                 0.019   zinc finger protein 62 homolog 
TOPBP1                0.019   topoisomerase (DNA) II binding protein 1 
LOC100127988          0.015   PREDICTED: hypothetical protein 
DPEP3                 0.011   dipeptidase 3 isoform b 
DPEP3                 0.011   dipeptidase 3 isoform a 
TCN1                  0.011   transcobalamin I precursor 
CRYZL1                0.011   crystallin, zeta-like 1 
TBC1D4                0.007   TBC1 domain family, member 4 
SMARCC2               0.007   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.007   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.007   SWI/SNF-related matrix-associated actin-dependent r...
LOC100290806          0.007   PREDICTED: hypothetical protein XP_002348069 
ARID1A                0.007   AT rich interactive domain 1A isoform b 
PAPOLA                0.007   poly(A) polymerase alpha 
SV2A                  0.004   synaptic vesicle glycoprotein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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