Guide to the Human Genome
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Name: LOC100293210 Sequence: fasta or formatted (195aa) NCBI GI: 239758021
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.5          3           1
 C cysteine            2.6          5           2
 D aspartate           1.5          3           1
 E glutamate           8.7         17           2
 F phenylalanine       2.1          4           2
 G glycine            12.3         24           3
 H histidine           3.1          6           1
 I isoleucine          2.1          4           1
 K lysine              1.5          3           1
 L leucine            13.8         27           2
 M methionine          0.5          1           1
 N asparagine          0.5          1           1
 P proline            13.8         27           4
 Q glutamine          11.3         22           3
 R arginine            5.6         11           2
 S serine              6.2         12           2
 T threonine           4.1          8           1
 V valine              3.1          6           2
 W tryptophan          5.6         11           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289267          0.941   PREDICTED: hypothetical protein XP_002342177 
BRD4                  0.064   bromodomain-containing protein 4 isoform long 
MYST3                 0.049   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.049   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.049   MYST histone acetyltransferase (monocytic leukemia)...
ZNF462                0.044   zinc finger protein 462 
RBM33                 0.037   RNA binding motif protein 33 
CKAP4                 0.034   cytoskeleton-associated protein 4 
MEF2D                 0.034   myocyte enhancer factor 2D 
SOX9                  0.032   transcription factor SOX9 
HTT                   0.032   huntingtin 
ANXA11                0.032   annexin A11 
ANXA11                0.032   annexin A11 
ANXA11                0.032   annexin A11 
MAGEC3                0.032   melanoma antigen family C, 3 isoform 2 
MAGEC3                0.032   melanoma antigen family C, 3 isoform 1 
MED15                 0.032   mediator complex subunit 15 isoform a 
MED15                 0.032   mediator complex subunit 15 isoform b 
FOXJ2                 0.032   forkhead box J2 
EP400                 0.029   E1A binding protein p400 
PHLDA1                0.029   pleckstrin homology-like domain, family A, member 1 ...
WDR33                 0.029   WD repeat domain 33 isoform 1 
SAMD1                 0.029   sterile alpha motif domain containing 1 
ZFHX3                 0.029   AT-binding transcription factor 1 
LAG3                  0.029   lymphocyte-activation protein 3 precursor 
PPP1R13L              0.029   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.029   protein phosphatase 1, regulatory subunit 13 like [H...
MLXIPL                0.029   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.029   Williams Beuren syndrome chromosome region 14 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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