Guide to the Human Genome
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Name: ATF5 Sequence: fasta or formatted (282aa) NCBI GI: 12597625
Description:

activating transcription factor 5

Referenced in:

CREB / ATF Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         24           2
 C cysteine            1.1          3           1
 D aspartate           5.0         14           1
 E glutamate           8.5         24           2
 F phenylalanine       1.8          5           2
 G glycine             6.7         19           2
 H histidine           0.4          1           1
 I isoleucine          1.1          3           1
 K lysine              3.9         11           2
 L leucine            15.6         44           2
 M methionine          1.8          5           1
 N asparagine          1.1          3           1
 P proline            18.8         53           4
 Q glutamine           4.6         13           2
 R arginine            6.4         18           1
 S serine              5.3         15           1
 T threonine           3.2          9           2
 V valine              3.2          9           1
 W tryptophan          0.7          2           1
 Y tyrosine            2.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   activating transcription factor 5 
ATF4                  0.124   activating transcription factor 4 
ATF4                  0.124   activating transcription factor 4 
WASL                  0.081   Wiskott-Aldrich syndrome gene-like protein 
WIPF3                 0.077   WAS/WASL interacting protein family, member 3 [Homo...
MLL2                  0.075   myeloid/lymphoid or mixed-lineage leukemia 2 
RAPH1                 0.072   Ras association and pleckstrin homology domains 1 is...
FLJ22184              0.072   PREDICTED: hypothetical protein FLJ22184 
PRR12                 0.070   proline rich 12 
SETBP1                0.070   SET binding protein 1 isoform a 
C6orf132              0.068   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.068   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.068   PREDICTED: hypothetical protein LOC647024 
FLJ22184              0.068   PREDICTED: hypothetical protein LOC80164 
ZFHX4                 0.066   zinc finger homeodomain 4 
FMN1                  0.066   formin 1 
FMNL1                 0.066   formin-like 1 
MYPOP                 0.065   Myb protein P42POP 
FMN2                  0.063   formin 2 
DIAPH1                0.063   diaphanous 1 isoform 2 
DIAPH1                0.063   diaphanous 1 isoform 1 
FMNL2                 0.063   formin-like 2 
ENAH                  0.061   enabled homolog isoform a 
ENAH                  0.061   enabled homolog isoform b 
PCDH15                0.061   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.061   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.061   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.061   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.061   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.061   protocadherin 15 isoform CD1-6 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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