Guide to the Human Genome
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Name: LOC100289267 Sequence: fasta or formatted (214aa) NCBI GI: 239741335
Description:

PREDICTED: hypothetical protein XP_002342177

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3          7           2
 C cysteine            3.3          7           2
 D aspartate           1.4          3           1
 E glutamate           7.9         17           2
 F phenylalanine       2.8          6           2
 G glycine            10.7         23           3
 H histidine           3.7          8           1
 I isoleucine          2.8          6           1
 K lysine              1.4          3           1
 L leucine            14.0         30           2
 M methionine          0.5          1           1
 N asparagine          0.9          2           1
 P proline            12.1         26           4
 Q glutamine          10.7         23           3
 R arginine            5.1         11           2
 S serine              6.5         14           2
 T threonine           4.2          9           1
 V valine              3.3          7           2
 W tryptophan          5.1         11           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342177 
LOC100293210          0.863   PREDICTED: hypothetical protein 
BRD4                  0.058   bromodomain-containing protein 4 isoform long 
MYST3                 0.045   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.045   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.045   MYST histone acetyltransferase (monocytic leukemia)...
ZNF462                0.040   zinc finger protein 462 
RBM33                 0.034   RNA binding motif protein 33 
CKAP4                 0.031   cytoskeleton-associated protein 4 
MEF2D                 0.031   myocyte enhancer factor 2D 
SOX9                  0.029   transcription factor SOX9 
HTT                   0.029   huntingtin 
ANXA11                0.029   annexin A11 
ANXA11                0.029   annexin A11 
ANXA11                0.029   annexin A11 
MAGEC3                0.029   melanoma antigen family C, 3 isoform 2 
MAGEC3                0.029   melanoma antigen family C, 3 isoform 1 
MED15                 0.029   mediator complex subunit 15 isoform a 
MED15                 0.029   mediator complex subunit 15 isoform b 
FOXJ2                 0.029   forkhead box J2 
EP400                 0.027   E1A binding protein p400 
PHLDA1                0.027   pleckstrin homology-like domain, family A, member 1 ...
WDR33                 0.027   WD repeat domain 33 isoform 1 
SAMD1                 0.027   sterile alpha motif domain containing 1 
ZFHX3                 0.027   AT-binding transcription factor 1 
LAG3                  0.027   lymphocyte-activation protein 3 precursor 
PPP1R13L              0.027   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.027   protein phosphatase 1, regulatory subunit 13 like [H...
MLXIPL                0.027   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.027   Williams Beuren syndrome chromosome region 14 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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