Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MRPS18B Sequence: fasta or formatted (258aa) NCBI GI: 7662645
Description:

mitochondrial ribosomal protein S18B

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         14           2
 C cysteine            2.3          6           1
 D aspartate           3.5          9           1
 E glutamate           5.8         15           2
 F phenylalanine       1.9          5           1
 G glycine             5.4         14           2
 H histidine           3.9         10           1
 I isoleucine          3.1          8           2
 K lysine              5.0         13           1
 L leucine             8.5         22           2
 M methionine          1.6          4           1
 N asparagine          2.3          6           1
 P proline            11.2         29           3
 Q glutamine           5.4         14           1
 R arginine            8.5         22           2
 S serine              7.8         20           2
 T threonine           5.4         14           1
 V valine              6.6         17           2
 W tryptophan          1.9          5           1
 Y tyrosine            4.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial ribosomal protein S18B 
MRPS18C               0.050   mitochondrial ribosomal protein S18C 
LOC100294048          0.044   PREDICTED: similar to mitochondrial ribosomal prote...
LOC100133779          0.044   PREDICTED: similar to mitochondrial ribosomal prote...
LOC100288560          0.044   PREDICTED: hypothetical protein XP_002344238 
MRPS18A               0.038   mitochondrial ribosomal protein S18A 
GGN                   0.033   gametogenetin 
ZNF628                0.027   zinc finger protein 628 
LOC100293210          0.019   PREDICTED: hypothetical protein 
LOC100289267          0.019   PREDICTED: hypothetical protein XP_002342177 
LAMA3                 0.015   laminin alpha 3 subunit isoform 1 
LAMA3                 0.015   laminin alpha 3 subunit isoform 3 
MMP9                  0.013   matrix metalloproteinase 9 preproprotein 
TATDN3                0.013   TatD DNase domain containing 3 isoform 5 
WIPF3                 0.013   WAS/WASL interacting protein family, member 3 [Homo...
HDAC7                 0.012   histone deacetylase 7 isoform d 
HDAC7                 0.012   histone deacetylase 7 isoform a 
BAG1                  0.012   BCL2-associated athanogene isoform 1L 
SEC24C                0.012   SEC24-related protein C 
SEC24C                0.012   SEC24-related protein C 
PRDM16                0.010   PR domain containing 16 isoform 2 
PRDM16                0.010   PR domain containing 16 isoform 1 
LOC100290519          0.010   PREDICTED: hypothetical protein XP_002346939 
ZFHX3                 0.010   AT-binding transcription factor 1 
EMILIN2               0.010   elastin microfibril interfacer 2 
POU6F2                0.010   POU domain, class 6, transcription factor 2 
PIK3R2                0.010   phosphoinositide-3-kinase, regulatory subunit 2 (beta...
LOC645529             0.010   PREDICTED: similar to Putative acrosin-like proteas...
ATF5                  0.010   activating transcription factor 5 
FAM155B               0.010   transmembrane protein 28 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press