Guide to the Human Genome
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Name: MRPS18A Sequence: fasta or formatted (196aa) NCBI GI: 8922511
Description:

mitochondrial ribosomal protein S18A

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         11           2
 C cysteine            3.1          6           1
 D aspartate           1.5          3           2
 E glutamate           5.1         10           2
 F phenylalanine       1.0          2           1
 G glycine             8.2         16           2
 H histidine           3.1          6           1
 I isoleucine          4.1          8           2
 K lysine              7.1         14           2
 L leucine            10.7         21           3
 M methionine          2.0          4           1
 N asparagine          4.1          8           1
 P proline            10.7         21           2
 Q glutamine           2.6          5           1
 R arginine           10.2         20           1
 S serine              5.1         10           1
 T threonine           4.6          9           2
 V valine              5.6         11           2
 W tryptophan          2.6          5           1
 Y tyrosine            3.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial ribosomal protein S18A 
MRPS18B               0.051   mitochondrial ribosomal protein S18B 
LOC100294048          0.048   PREDICTED: similar to mitochondrial ribosomal prote...
LOC100133779          0.048   PREDICTED: similar to mitochondrial ribosomal prote...
LOC100288560          0.048   PREDICTED: hypothetical protein XP_002344238 
MRPS18C               0.048   mitochondrial ribosomal protein S18C 
DNTTIP1               0.031   terminal deoxynucleotidyltransferase interacting fac...
CDC2L5                0.018   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.018   cell division cycle 2-like 5 isoform 2 
GAB1                  0.013   GRB2-associated binding protein 1 isoform b 
CABIN1                0.013   calcineurin binding protein 1 
DCHS2                 0.010   dachsous 2 isoform 1 
C17orf77              0.010   hypothetical protein LOC146723 
C9orf3                0.010   aminopeptidase O 
ZBTB45                0.008   zinc finger and BTB domain containing 45 
FCRL1                 0.008   Fc receptor-like 1 isoform 2 precursor 
TNFRSF8               0.008   tumor necrosis factor receptor superfamily, member 8...
LOC100293951          0.008   PREDICTED: hypothetical protein 
LOC100291415          0.008   PREDICTED: hypothetical protein XP_002347313 
LOC100287201          0.008   PREDICTED: hypothetical protein XP_002343162 
ZNF646                0.008   zinc finger protein 646 
ZBTB44                0.008   zinc finger and BTB domain containing 44 
MAST1                 0.008   microtubule associated serine/threonine kinase 1 [Ho...
LOC100289565          0.008   PREDICTED: hypothetical protein XP_002342184 
ZNF462                0.008   zinc finger protein 462 
BAIAP2L2              0.008   BAI1-associated protein 2-like 2 
PLXNB3                0.005   plexin B3 isoform 2 
PLXNB3                0.005   plexin B3 isoform 1 
GP6                   0.005   glycoprotein VI (platelet) isoform 2 
LRRN4                 0.005   leucine rich repeat neuronal 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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