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Search of human proteins with 7661952
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7661952 squamous cell carcinoma antigen recognized by T
cells 3 [Homo sapiens]
(963 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7661952 squamous cell carcinoma antigen recognized by T cells... 1928 0.0
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 75 2e-13
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 75 2e-13
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 75 2e-13
gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofo... 74 9e-13
gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofor... 72 2e-12
gi|55956788 nucleolin [Homo sapiens] 72 3e-12
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 69 2e-11
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 69 2e-11
gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b... 67 1e-10
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 64 5e-10
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 64 9e-10
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 64 9e-10
gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ... 63 2e-09
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [... 62 2e-09
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 62 2e-09
gi|21450675 RNA binding motif protein 46 [Homo sapiens] 61 6e-09
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens] 60 8e-09
gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens] 60 1e-08
gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens] 60 1e-08
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 60 1e-08
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 60 1e-08
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 60 1e-08
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 60 1e-08
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens] 60 1e-08
gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 59 2e-08
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 59 2e-08
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 58 5e-08
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 58 5e-08
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 58 5e-08
>gi|7661952 squamous cell carcinoma antigen recognized by T cells 3
[Homo sapiens]
Length = 963
Score = 1928 bits (4994), Expect = 0.0
Identities = 963/963 (100%), Positives = 963/963 (100%)
Query: 1 MATAAETSASEPEAESKAGPKADGEEDEVKAARTRRKVLSRAVAAATYKTMGPAWDQQEE 60
MATAAETSASEPEAESKAGPKADGEEDEVKAARTRRKVLSRAVAAATYKTMGPAWDQQEE
Sbjct: 1 MATAAETSASEPEAESKAGPKADGEEDEVKAARTRRKVLSRAVAAATYKTMGPAWDQQEE 60
Query: 61 GVSESDGDEYAMASSAESSPGEYEWEYDEEEEKNQLEIERLEEQLSINVYDYNCHVDLIR 120
GVSESDGDEYAMASSAESSPGEYEWEYDEEEEKNQLEIERLEEQLSINVYDYNCHVDLIR
Sbjct: 61 GVSESDGDEYAMASSAESSPGEYEWEYDEEEEKNQLEIERLEEQLSINVYDYNCHVDLIR 120
Query: 121 LLRLEGELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDY 180
LLRLEGELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDY
Sbjct: 121 LLRLEGELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDY 180
Query: 181 ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVE 240
ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVE
Sbjct: 181 ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVE 240
Query: 241 AARLEKVHSLFRRQLAIPLYDMEATFAEYEEWSEDPIPESVIQNYNKALQQLEKYKPYEE 300
AARLEKVHSLFRRQLAIPLYDMEATFAEYEEWSEDPIPESVIQNYNKALQQLEKYKPYEE
Sbjct: 241 AARLEKVHSLFRRQLAIPLYDMEATFAEYEEWSEDPIPESVIQNYNKALQQLEKYKPYEE 300
Query: 301 ALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKV 360
ALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKV
Sbjct: 301 ALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKV 360
Query: 361 KDLVLSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEI 420
KDLVLSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEI
Sbjct: 361 KDLVLSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEI 420
Query: 421 WQAYLDYLRRRVDFKQDSSKELEELRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWAR 480
WQAYLDYLRRRVDFKQDSSKELEELRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWAR
Sbjct: 421 WQAYLDYLRRRVDFKQDSSKELEELRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWAR 480
Query: 481 IEARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQCTSD 540
IEARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQCTSD
Sbjct: 481 IEARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQCTSD 540
Query: 541 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ 600
YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ
Sbjct: 541 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ 600
Query: 601 RKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNV 660
RKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNV
Sbjct: 601 RKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNV 660
Query: 661 EVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDT 720
EVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDT
Sbjct: 661 EVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDT 720
Query: 721 KLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPC 780
KLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPC
Sbjct: 721 KLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPC 780
Query: 781 VDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKP 840
VDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKP
Sbjct: 781 VDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKP 840
Query: 841 KGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLP 900
KGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLP
Sbjct: 841 KGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLP 900
Query: 901 QTYGARGKGRTQLSLLPRALQRPSAAAPQAENGPAAAPAVAAPAATEAPKMSNADFAKLF 960
QTYGARGKGRTQLSLLPRALQRPSAAAPQAENGPAAAPAVAAPAATEAPKMSNADFAKLF
Sbjct: 901 QTYGARGKGRTQLSLLPRALQRPSAAAPQAENGPAAAPAVAAPAATEAPKMSNADFAKLF 960
Query: 961 LRK 963
LRK
Sbjct: 961 LRK 963
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 75.5 bits (184), Expect = 2e-13
Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 57/316 (18%)
Query: 585 EKEAALVQQEEEKAEQRKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKR 644
E+EA+L + + E + K +K E+ DE + G + EE+ S
Sbjct: 190 EEEASLEPKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCDEGSEAEEEDSSA 249
Query: 645 RRV--ENSIPAAGETQNVEVAAGPAGKC----AAVDVEPPSKQKEKAASLKRDMPKVLHD 698
V E AG+ Q + PAGK A + E P+ QKE P H
Sbjct: 250 TPVLQERDSKGAGQEQGM-----PAGKKRPPEARAETEKPANQKE---------PTTCH- 294
Query: 699 SSKDSITVFVSNLPYSMQEPDTK--LRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEE 756
TV + P+++ E + L PL + V IR + + G+ GY +V+F E
Sbjct: 295 ------TVKLRGAPFNVTEKNVMEFLAPL-----KPVAIRIVRNAHGNKTGYIFVDFSNE 343
Query: 757 KSALQALEMDRKSVEGRPMFVSPCVDKSKN-PDFKVFRYSTS-----------------L 798
+ QAL+ +R+ + GR + V + KN P K +T+
Sbjct: 344 EEVKQALKCNREYMGGRYIEVF----REKNVPTTKGAPKNTTKSWQGRILGENEEEEDLA 399
Query: 799 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL-VTNRAGKPKGLAYVEYENESQASQA 857
E +LF+ LP++ T+E+LE++ +G + +L + + KPKG A++ + A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 858 VMKMDGMTIKENIIKV 873
++DG + ++ V
Sbjct: 460 YSEVDGQVFQGRMLHV 475
Score = 47.8 bits (112), Expect = 5e-05
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 797 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL--VTNRAG--KPKGLAYVEYENES 852
SL LFI L F T+E+L+E+ GTVK + N+AG G +VEY
Sbjct: 726 SLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPE 785
Query: 853 QASQAVMKMDG---------MTIKENIIKVAISNPPQRKVPEKPETRK 891
QA +A+ ++ G + I E K A++ +++VP K T K
Sbjct: 786 QAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSK 833
Score = 36.2 bits (82), Expect = 0.15
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEM 765
+ V NLP M+E + R LF A G + F+ G FR + ++ FK E+ A +A +
Sbjct: 4 LIVKNLPNGMKEE--RFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61
Query: 766 DRKS 769
KS
Sbjct: 62 FNKS 65
Score = 33.1 bits (74), Expect = 1.3
Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 19/157 (12%)
Query: 802 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861
+L + LP +E ++ A GT+ D L + GK + ++ +++E +A +A
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHF 62
Query: 862 DGMTIKENIIKV----AISNPPQ----RKVPEKPETRKAPGGPMLLPQTYGARGKGR--- 910
+ I + I V + +P + K +KP K P P+ K +
Sbjct: 63 NKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPEIKKDEKKKKVAG 122
Query: 911 --------TQLSLLPRALQRPSAAAPQAENGPAAAPA 939
T+ QR + AA A +G A P+
Sbjct: 123 QLEKLKEDTEFQEFLSVHQRRAQAATWANDGLDAEPS 159
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 75.5 bits (184), Expect = 2e-13
Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 57/316 (18%)
Query: 585 EKEAALVQQEEEKAEQRKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKR 644
E+EA+L + + E + K +K E+ DE + G + EE+ S
Sbjct: 190 EEEASLEPKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCDEGSEAEEEDSSA 249
Query: 645 RRV--ENSIPAAGETQNVEVAAGPAGKC----AAVDVEPPSKQKEKAASLKRDMPKVLHD 698
V E AG+ Q + PAGK A + E P+ QKE P H
Sbjct: 250 TPVLQERDSKGAGQEQGM-----PAGKKRPPEARAETEKPANQKE---------PTTCH- 294
Query: 699 SSKDSITVFVSNLPYSMQEPDTK--LRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEE 756
TV + P+++ E + L PL + V IR + + G+ GY +V+F E
Sbjct: 295 ------TVKLRGAPFNVTEKNVMEFLAPL-----KPVAIRIVRNAHGNKTGYIFVDFSNE 343
Query: 757 KSALQALEMDRKSVEGRPMFVSPCVDKSKN-PDFKVFRYSTS-----------------L 798
+ QAL+ +R+ + GR + V + KN P K +T+
Sbjct: 344 EEVKQALKCNREYMGGRYIEVF----REKNVPTTKGAPKNTTKSWQGRILGENEEEEDLA 399
Query: 799 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL-VTNRAGKPKGLAYVEYENESQASQA 857
E +LF+ LP++ T+E+LE++ +G + +L + + KPKG A++ + A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 858 VMKMDGMTIKENIIKV 873
++DG + ++ V
Sbjct: 460 YSEVDGQVFQGRMLHV 475
Score = 47.8 bits (112), Expect = 5e-05
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 797 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL--VTNRAG--KPKGLAYVEYENES 852
SL LFI L F T+E+L+E+ GTVK + N+AG G +VEY
Sbjct: 726 SLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPE 785
Query: 853 QASQAVMKMDG---------MTIKENIIKVAISNPPQRKVPEKPETRK 891
QA +A+ ++ G + I E K A++ +++VP K T K
Sbjct: 786 QAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSK 833
Score = 36.2 bits (82), Expect = 0.15
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEM 765
+ V NLP M+E + R LF A G + F+ G FR + ++ FK E+ A +A +
Sbjct: 4 LIVKNLPNGMKEE--RFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61
Query: 766 DRKS 769
KS
Sbjct: 62 FNKS 65
Score = 33.1 bits (74), Expect = 1.3
Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 19/157 (12%)
Query: 802 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861
+L + LP +E ++ A GT+ D L + GK + ++ +++E +A +A
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHF 62
Query: 862 DGMTIKENIIKV----AISNPPQ----RKVPEKPETRKAPGGPMLLPQTYGARGKGR--- 910
+ I + I V + +P + K +KP K P P+ K +
Sbjct: 63 NKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPEIKKDEKKKKVAG 122
Query: 911 --------TQLSLLPRALQRPSAAAPQAENGPAAAPA 939
T+ QR + AA A +G A P+
Sbjct: 123 QLEKLKEDTEFQEFLSVHQRRAQAATWANDGLDAEPS 159
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 75.5 bits (184), Expect = 2e-13
Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 57/316 (18%)
Query: 585 EKEAALVQQEEEKAEQRKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKR 644
E+EA+L + + E + K +K E+ DE + G + EE+ S
Sbjct: 190 EEEASLEPKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCDEGSEAEEEDSSA 249
Query: 645 RRV--ENSIPAAGETQNVEVAAGPAGKC----AAVDVEPPSKQKEKAASLKRDMPKVLHD 698
V E AG+ Q + PAGK A + E P+ QKE P H
Sbjct: 250 TPVLQERDSKGAGQEQGM-----PAGKKRPPEARAETEKPANQKE---------PTTCH- 294
Query: 699 SSKDSITVFVSNLPYSMQEPDTK--LRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEE 756
TV + P+++ E + L PL + V IR + + G+ GY +V+F E
Sbjct: 295 ------TVKLRGAPFNVTEKNVMEFLAPL-----KPVAIRIVRNAHGNKTGYIFVDFSNE 343
Query: 757 KSALQALEMDRKSVEGRPMFVSPCVDKSKN-PDFKVFRYSTS-----------------L 798
+ QAL+ +R+ + GR + V + KN P K +T+
Sbjct: 344 EEVKQALKCNREYMGGRYIEVF----REKNVPTTKGAPKNTTKSWQGRILGENEEEEDLA 399
Query: 799 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL-VTNRAGKPKGLAYVEYENESQASQA 857
E +LF+ LP++ T+E+LE++ +G + +L + + KPKG A++ + A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 858 VMKMDGMTIKENIIKV 873
++DG + ++ V
Sbjct: 460 YSEVDGQVFQGRMLHV 475
Score = 47.8 bits (112), Expect = 5e-05
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 797 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL--VTNRAG--KPKGLAYVEYENES 852
SL LFI L F T+E+L+E+ GTVK + N+AG G +VEY
Sbjct: 726 SLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPE 785
Query: 853 QASQAVMKMDG---------MTIKENIIKVAISNPPQRKVPEKPETRK 891
QA +A+ ++ G + I E K A++ +++VP K T K
Sbjct: 786 QAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSK 833
Score = 36.2 bits (82), Expect = 0.15
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEM 765
+ V NLP M+E + R LF A G + F+ G FR + ++ FK E+ A +A +
Sbjct: 4 LIVKNLPNGMKEE--RFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61
Query: 766 DRKS 769
KS
Sbjct: 62 FNKS 65
Score = 33.1 bits (74), Expect = 1.3
Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 19/157 (12%)
Query: 802 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861
+L + LP +E ++ A GT+ D L + GK + ++ +++E +A +A
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHF 62
Query: 862 DGMTIKENIIKV----AISNPPQ----RKVPEKPETRKAPGGPMLLPQTYGARGKGR--- 910
+ I + I V + +P + K +KP K P P+ K +
Sbjct: 63 NKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPEIKKDEKKKKVAG 122
Query: 911 --------TQLSLLPRALQRPSAAAPQAENGPAAAPA 939
T+ QR + AA A +G A P+
Sbjct: 123 QLEKLKEDTEFQEFLSVHQRRAQAATWANDGLDAEPS 159
>gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform
b [Homo sapiens]
Length = 471
Score = 73.6 bits (179), Expect = 9e-13
Identities = 81/354 (22%), Positives = 146/354 (41%), Gaps = 31/354 (8%)
Query: 567 QKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQR-KRARAEKKALKKKKKIRGPEKRGA 625
Q E + R E R + + + + ++ R +R R ++ A + +++ P RGA
Sbjct: 10 QLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLTRGA 69
Query: 626 DEDDEKEWGDDEEEQPSKRRRVENSIPAAGE--TQNVEVAAGPAGKCAAVDVEPPSKQKE 683
E+ E+ K R+ + P E T A AG+ A + P + +
Sbjct: 70 KEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLP-TMTPD 128
Query: 684 KAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEP--------DTKLRPLFEACGEVVQI 735
A +P V ++ + ++V N+P+ + E +L L +A G V
Sbjct: 129 GLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA 188
Query: 736 RPIFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEG------RPMFVSPCVDKSKNPDF 789
I ++ + ++EF+ QA+ D +G RP P S+NP
Sbjct: 189 VQINQDKN----FAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSV 244
Query: 790 KVFRYSTSL---EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA-GKPKGLAY 845
V +++ HKLFI GLP ++++E+ + G +K LV + A G KG A+
Sbjct: 245 YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 304
Query: 846 VEYENESQASQAVMKMDGMTIKENII-----KVAISNPPQRKVPEKPETRKAPG 894
EY + + QA+ ++GM + + + V N + + P T + PG
Sbjct: 305 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQTPVTLQVPG 358
>gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform a
[Homo sapiens]
Length = 475
Score = 72.0 bits (175), Expect = 2e-12
Identities = 82/358 (22%), Positives = 147/358 (41%), Gaps = 35/358 (9%)
Query: 567 QKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQR-KRARAEKKALKKKKKIRGPEKRGA 625
Q E + R E R + + + + ++ R +R R ++ A + +++ P RGA
Sbjct: 10 QLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLTRGA 69
Query: 626 DEDDEKEWGDDEEEQPSKRRRVENSIPAAGE--TQNVEVAAGPAGKCAAVDVEPPSKQKE 683
E+ E+ K R+ + P E T A AG+ A + P + +
Sbjct: 70 KEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLP-TMTPD 128
Query: 684 KAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEP--------DTKLRPLFEACGEVVQI 735
A +P V ++ + ++V N+P+ + E +L L +A G V
Sbjct: 129 GLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA 188
Query: 736 RPIFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEG------RPMFVSPCVDKSKNPDF 789
I ++ + ++EF+ QA+ D +G RP P S+NP
Sbjct: 189 VQINQDKN----FAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSV 244
Query: 790 KVFRYSTSL---EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA-GKPKGLAY 845
V +++ HKLFI GLP ++++E+ + G +K LV + A G KG A+
Sbjct: 245 YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 304
Query: 846 VEYENESQASQAVMKMDGMTIKENII---------KVAISNPPQRKVPEKPETRKAPG 894
EY + + QA+ ++GM + + + K A P + + P T + PG
Sbjct: 305 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPG 362
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 71.6 bits (174), Expect = 3e-12
Identities = 71/276 (25%), Positives = 122/276 (44%), Gaps = 26/276 (9%)
Query: 594 EEEKAEQRKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVENSIPA 653
EE+ +E+ K K K + K A+++DE+E DDE+E E+
Sbjct: 202 EEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEE--DDEDEDDDDDEDDEDDDDE 259
Query: 654 AGETQNVEVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPY 713
E + E P + + +KQK + K+ KV + +FV NL +
Sbjct: 260 DDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQ---KVEGTEPTTAFNLFVGNLNF 316
Query: 714 SMQEPDTK--LRPLFEACG-EVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEMDRKSV 770
+ P+ K + +F VV +R G R + YV+F+ + +ALE+ V
Sbjct: 317 NKSAPELKTGISDVFAKNDLAVVDVRI-----GMTRKFGYVDFESAEDLEKALELTGLKV 371
Query: 771 EGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDL 830
G + + +K K D K R + L LP+ T++EL+E+ + ++
Sbjct: 372 FGNEIKL----EKPKGKDSKKER-----DARTLLAKNLPYKVTQDELKEVFE---DAAEI 419
Query: 831 RLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI 866
RLV+ + GK KG+AY+E++ E+ A + + G I
Sbjct: 420 RLVS-KDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 454
Score = 54.7 bits (130), Expect = 4e-07
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 36/213 (16%)
Query: 700 SKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSA 759
S +S T+ +SNL YS E L+ +FE + I+ + G +GY ++EF + A
Sbjct: 482 SGESKTLVLSNLSYSATEET--LQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDA 536
Query: 760 LQALEM-DRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELE 818
+AL +++ +EGR + + + +P+ + S LF+ GL T+E L+
Sbjct: 537 KEALNSCNKREIEGRAIRLELQGPRG-SPNAR------SQPSKTLFVKGLSEDTTEETLK 589
Query: 819 EICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 877
E G+V+ R+VT+R G KG +V++ +E A A M+ I N + + +
Sbjct: 590 E--SFDGSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646
Query: 878 PPQRKVPEKPETRKAPGGPMLLPQTYGARGKGR 910
P K GG +G RG GR
Sbjct: 647 P------------KGEGG-------FGGRGGGR 660
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 68.9 bits (167), Expect = 2e-11
Identities = 69/318 (21%), Positives = 137/318 (43%), Gaps = 28/318 (8%)
Query: 578 EQRMKAAEKEAALVQQEEEKAEQRKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDE 637
E K E + + EE++++RK++++ ++ ++K+ KR D + +K +
Sbjct: 12 EAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRER 71
Query: 638 EEQPSKRRRVENS------------IPAAGETQNVEVAAGPAGKCAAVDVEPPSKQKEKA 685
+ SK RR S P +G N + GK S+++ ++
Sbjct: 72 KRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAI----RGKIGLPHSIKLSRRRSRS 127
Query: 686 AS-LKRDMPKV------LHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPI 738
S ++D V L +D+ TVF L ++ D L F G+V +R I
Sbjct: 128 KSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRD--LEEFFSTVGKVRDVRMI 185
Query: 739 FS-NRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPC-VDKSKNPDFKVFRYST 796
N +G YVEF + S A+ + + V G P+ V +K++
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKG 245
Query: 797 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL-VTNRAGKPKGLAYVEYENESQAS 855
S +L++ L F+ T++ L I + G ++ ++L + + G+ KG ++ + + A
Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305
Query: 856 QAVMKMDGMTIKENIIKV 873
+A+ +++G + +KV
Sbjct: 306 KALEQLNGFELAGRPMKV 323
Score = 37.4 bits (85), Expect = 0.068
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 816 ELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 874
+LEE G V+D+R++++R + + KG+AYVE+ + S A+ + II A
Sbjct: 168 DLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQA 227
Query: 875 ISNPPQRKVPEKPETRKAPGGPMLL 899
R +K GPM L
Sbjct: 228 SQAEKNRAAAMANNLQKGSAGPMRL 252
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 68.9 bits (167), Expect = 2e-11
Identities = 69/318 (21%), Positives = 137/318 (43%), Gaps = 28/318 (8%)
Query: 578 EQRMKAAEKEAALVQQEEEKAEQRKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDE 637
E K E + + EE++++RK++++ ++ ++K+ KR D + +K +
Sbjct: 12 EAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRER 71
Query: 638 EEQPSKRRRVENS------------IPAAGETQNVEVAAGPAGKCAAVDVEPPSKQKEKA 685
+ SK RR S P +G N + GK S+++ ++
Sbjct: 72 KRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAI----RGKIGLPHSIKLSRRRSRS 127
Query: 686 AS-LKRDMPKV------LHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPI 738
S ++D V L +D+ TVF L ++ D L F G+V +R I
Sbjct: 128 KSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRD--LEEFFSTVGKVRDVRMI 185
Query: 739 FS-NRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPC-VDKSKNPDFKVFRYST 796
N +G YVEF + S A+ + + V G P+ V +K++
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKG 245
Query: 797 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL-VTNRAGKPKGLAYVEYENESQAS 855
S +L++ L F+ T++ L I + G ++ ++L + + G+ KG ++ + + A
Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305
Query: 856 QAVMKMDGMTIKENIIKV 873
+A+ +++G + +KV
Sbjct: 306 KALEQLNGFELAGRPMKV 323
Score = 37.4 bits (85), Expect = 0.068
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 816 ELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 874
+LEE G V+D+R++++R + + KG+AYVE+ + S A+ + II A
Sbjct: 168 DLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQA 227
Query: 875 ISNPPQRKVPEKPETRKAPGGPMLL 899
R +K GPM L
Sbjct: 228 SQAEKNRAAAMANNLQKGSAGPMRL 252
>gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b
[Homo sapiens]
Length = 691
Score = 66.6 bits (161), Expect = 1e-10
Identities = 61/251 (24%), Positives = 114/251 (45%), Gaps = 19/251 (7%)
Query: 663 AAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVL-HDSSKDSITVFVSNLPYSMQEPDTK 721
A GP G+ P +K K ++KR + + + F++N+P+ ++ K
Sbjct: 33 APGPKGE----GERPAQNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLK 88
Query: 722 LRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALE-MDRKSVEGRPMFV--S 778
+ E GEV + + G RG VEFK E+S +A E +++ S+ GRP+ V
Sbjct: 89 -DLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKED 147
Query: 779 PCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAG 838
P + ++ K R ++ +F++ L + ++L+E+ G V ++ ++ G
Sbjct: 148 PDGEHARRAMQKAGRLGST-----VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDG 202
Query: 839 KPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPML 898
K +G+ V +E +A QA+ +G + + + V + +R +P+ P P
Sbjct: 203 KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD---ERALPKGDFF--PPERPQQ 257
Query: 899 LPQTYGARGKG 909
LP G G G
Sbjct: 258 LPHGLGGIGMG 268
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 64.3 bits (155), Expect = 5e-10
Identities = 47/187 (25%), Positives = 97/187 (51%), Gaps = 10/187 (5%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALE- 764
VF+ NL S+ + L F A G+++ + + ++G +GY +V F+ + +A +A+E
Sbjct: 100 VFIKNLDKSID--NKTLYEHFSAFGKILSSKVMSDDQGS-KGYAFVHFQNQSAADRAIEE 156
Query: 765 MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAH 824
M+ K ++G +FV ++ D + S + E ++I E L+++ +
Sbjct: 157 MNGKLLKGCKVFVGRFKNRK---DREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKY 213
Query: 825 GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVP 884
G ++++T+ +GK KG +V +++ A +AV +M+G I +I V + Q+KV
Sbjct: 214 GKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA---QKKVE 270
Query: 885 EKPETRK 891
+ E ++
Sbjct: 271 RQAELKQ 277
Score = 54.3 bits (129), Expect = 5e-07
Identities = 39/196 (19%), Positives = 91/196 (46%), Gaps = 11/196 (5%)
Query: 689 KRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGY 748
++D L + + V++ N M D +L+ +F G+ + ++ + + G +G+
Sbjct: 175 RKDREAELRSKASEFTNVYIKNFGGDMD--DERLKDVFSKYGKTLSVKVMTDSSGKSKGF 232
Query: 749 CYVEFKEEKSALQALE-MDRKSVEGRPMFVSPCVDK-SKNPDFKVFRYSTSLEKH----- 801
+V F ++A +A+E M+ + + G+ +FV K + + K E+
Sbjct: 233 GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQG 292
Query: 802 -KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 860
KL+I L + E+L + G++ ++ V G+ KG + + + A++A+ +
Sbjct: 293 VKLYIKNLDDTIDDEKLRNEFSSFGSISRVK-VMQEEGQSKGFGLICFSSPEDATKAMTE 351
Query: 861 MDGMTIKENIIKVAIS 876
M+G + + +A++
Sbjct: 352 MNGRILGSKPLSIALA 367
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 63.5 bits (153), Expect = 9e-10
Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 696 LHDSSKDSI-TVFVSNLPYSMQEPDTKLRPLFEACGEVVQ---IRPIFSNRGDFRGYCYV 751
+++S D I +FV L +S + LR F GEVV ++ +N+ RG+ +V
Sbjct: 1 MNNSGADEIGKLFVGGLDWSTTQET--LRSYFSQYGEVVDCVIMKDKTTNQS--RGFGFV 56
Query: 752 EFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPD-------FKVFRYSTSLEKHKLF 804
+FK+ L +++GR + PC + P+ ++ S + + +K+F
Sbjct: 57 KFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIF 116
Query: 805 ISGLPFSCTKEELEEICKAHGTVKDLRLVTN-RAGKPKGLAYVEYENESQASQAV-MKMD 862
+ G+P +C + EL E K G V ++ ++ + +P+G ++ +E+E QAV M
Sbjct: 117 VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFH 176
Query: 863 GMTIKENIIKVAISNPPQRKVPEKP 887
+ K+ +K A + + P +P
Sbjct: 177 DIMGKKVEVKRAEPRDSKSQAPGQP 201
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 63.5 bits (153), Expect = 9e-10
Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 696 LHDSSKDSI-TVFVSNLPYSMQEPDTKLRPLFEACGEVVQ---IRPIFSNRGDFRGYCYV 751
+++S D I +FV L +S + LR F GEVV ++ +N+ RG+ +V
Sbjct: 1 MNNSGADEIGKLFVGGLDWSTTQET--LRSYFSQYGEVVDCVIMKDKTTNQS--RGFGFV 56
Query: 752 EFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPD-------FKVFRYSTSLEKHKLF 804
+FK+ L +++GR + PC + P+ ++ S + + +K+F
Sbjct: 57 KFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIF 116
Query: 805 ISGLPFSCTKEELEEICKAHGTVKDLRLVTN-RAGKPKGLAYVEYENESQASQAV-MKMD 862
+ G+P +C + EL E K G V ++ ++ + +P+G ++ +E+E QAV M
Sbjct: 117 VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFH 176
Query: 863 GMTIKENIIKVAISNPPQRKVPEKP 887
+ K+ +K A + + P +P
Sbjct: 177 DIMGKKVEVKRAEPRDSKSQAPGQP 201
>gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3
[Homo sapiens]
Length = 486
Score = 62.8 bits (151), Expect = 2e-09
Identities = 71/284 (25%), Positives = 118/284 (41%), Gaps = 45/284 (15%)
Query: 702 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQI---RPIFSNRGDFRGYCYVEFKEEKS 758
D+I +FV +P + E D LR LFE G V +I R N +G C+V F K+
Sbjct: 14 DAIKMFVGQVPRTWSEKD--LRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKA 71
Query: 759 ALQALEM--DRKSVEG--RPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTK 814
AL+A + K + G P+ + P D KN ++E KLFI + CT+
Sbjct: 72 ALEAQNALHNMKVLPGMHHPIQMKPA-DSEKN---------NAVEDRKLFIGMISKKCTE 121
Query: 815 EELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKEN----- 869
++ + + G +++ R++ G +G A+V + + A A+ M E
Sbjct: 122 NDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 181
Query: 870 IIKVAIS---NPPQRKVPEKPETRKAPGGPMLLPQTYGARGKGRTQLSLLPRALQRPSAA 926
++K A + +R + + + + G G L+L + LQ+ +++
Sbjct: 182 VVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASS 241
Query: 927 ----------------APQAENGPAAAPAVAAPAATEAPKMSNA 954
A Q +N AA A AA AA P +NA
Sbjct: 242 GNLNTLSSLHPMGGLNAMQLQN--LAALAAAASAAQNTPSGTNA 283
Score = 30.4 bits (67), Expect = 8.3
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 799 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL-VTNRAGKPKGLAYVEYENESQASQA 857
E LFI LP ++L ++ G V ++ + + K +V Y+N A A
Sbjct: 399 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 458
Query: 858 VMKMDGMTIKENIIKVAISNPPQRKVP 884
+ M+G I +KV + P
Sbjct: 459 IQSMNGFQIGMKRLKVQLKRSKNDSKP 485
>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
[Homo sapiens]
Length = 482
Score = 62.4 bits (150), Expect = 2e-09
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 19/167 (11%)
Query: 702 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQI---RPIFSNRGDFRGYCYVEFKEEKS 758
D+I +FV +P + E D LR LFE G V +I R N +G C+V F K+
Sbjct: 14 DAIKMFVGQVPRTWSEKD--LRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKA 71
Query: 759 ALQALEM--DRKSVEG--RPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTK 814
AL+A + K + G P+ + P D KN ++E KLFI + CT+
Sbjct: 72 ALEAQNALHNMKVLPGMHHPIQMKPA-DSEKN---------NAVEDRKLFIGMISKKCTE 121
Query: 815 EELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861
++ + + G +++ R++ G +G A+V + + A A+ M
Sbjct: 122 NDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168
Score = 30.4 bits (67), Expect = 8.3
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 799 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL-VTNRAGKPKGLAYVEYENESQASQA 857
E LFI LP ++L ++ G V ++ + + K +V Y+N A A
Sbjct: 395 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 454
Query: 858 VMKMDGMTIKENIIKVAISNPPQRKVP 884
+ M+G I +KV + P
Sbjct: 455 IQSMNGFQIGMKRLKVQLKRSKNDSKP 481
>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
[Homo sapiens]
Length = 483
Score = 62.4 bits (150), Expect = 2e-09
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 19/167 (11%)
Query: 702 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQI---RPIFSNRGDFRGYCYVEFKEEKS 758
D+I +FV +P + E D LR LFE G V +I R N +G C+V F K+
Sbjct: 14 DAIKMFVGQVPRTWSEKD--LRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKA 71
Query: 759 ALQALEM--DRKSVEG--RPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTK 814
AL+A + K + G P+ + P D KN ++E KLFI + CT+
Sbjct: 72 ALEAQNALHNMKVLPGMHHPIQMKPA-DSEKN---------NAVEDRKLFIGMISKKCTE 121
Query: 815 EELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861
++ + + G +++ R++ G +G A+V + + A A+ M
Sbjct: 122 NDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168
Score = 30.4 bits (67), Expect = 8.3
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 799 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL-VTNRAGKPKGLAYVEYENESQASQA 857
E LFI LP ++L ++ G V ++ + + K +V Y+N A A
Sbjct: 396 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 455
Query: 858 VMKMDGMTIKENIIKVAISNPPQRKVP 884
+ M+G I +KV + P
Sbjct: 456 IQSMNGFQIGMKRLKVQLKRSKNDSKP 482
>gi|21450675 RNA binding motif protein 46 [Homo sapiens]
Length = 533
Score = 60.8 bits (146), Expect = 6e-09
Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 22/160 (13%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEM 765
VFV +P M E + L P+FE G++ + R + G+ RGY +V + ++ A A+ +
Sbjct: 63 VFVGKIPRDMYEDE--LVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 766 DRKSVEGRP-MFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEE-LEEICKA 823
+ E RP F+ CV SL+ +LFI +P KEE L+E+ K
Sbjct: 121 -LNNYEIRPGKFIGVCV---------------SLDNCRLFIGAIPKEKKKEEILDEMKKV 164
Query: 824 HGTVKDLRLVTNRAGKPK--GLAYVEYENESQASQAVMKM 861
V D+ + + K K G A+VEYE+ A+ A K+
Sbjct: 165 TEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKL 204
Score = 35.4 bits (80), Expect = 0.26
Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 15/187 (8%)
Query: 700 SKDSITVFVSNLPYSMQEPDT--KLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEK 757
S D+ +F+ +P ++ + +++ + E +V+ + P +++ RG+ +VE++ +
Sbjct: 137 SLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVI-VYPSATDKTKNRGFAFVEYESHR 195
Query: 758 SALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEEL 817
+A A RK + G + K T L++ L S T+E +
Sbjct: 196 AAAMAR---RKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETI 252
Query: 818 E-EICKAH-GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 875
+ E K G V+ R K + A+V + N A A+ M+G I I+V +
Sbjct: 253 KAEFNKFKPGAVE-------RVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTL 305
Query: 876 SNPPQRK 882
+ P ++
Sbjct: 306 AKPVNKE 312
Score = 34.3 bits (77), Expect = 0.58
Identities = 15/66 (22%), Positives = 36/66 (54%)
Query: 802 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861
++F+ +P ++EL + + G + + RL+ +G+ +G A+V Y + +A A+ +
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRIL 121
Query: 862 DGMTIK 867
+ I+
Sbjct: 122 NNYEIR 127
>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
Length = 430
Score = 60.5 bits (145), Expect = 8e-09
Identities = 69/288 (23%), Positives = 120/288 (41%), Gaps = 50/288 (17%)
Query: 593 QEEEKAEQRKRARAEK--KALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVENS 650
+EEE Q +R +++ K +K KKK EK+ AD + D EEE K+ +
Sbjct: 86 EEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQ---- 141
Query: 651 IPAAGETQNVEVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKDSITVFVSN 710
+ +N + A + D E + K + ++ ++ K+ TVFV N
Sbjct: 142 -----KRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERL-----KNERTVFVGN 191
Query: 711 LPYSMQEPDTKLRPLFEACGEV--VQIRPIFSNRGDFRG----------------YCYVE 752
LP + + KL+ F+ G++ V+ R + G YV
Sbjct: 192 LPVTCNK--KKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVV 249
Query: 753 FKEEKSALQALEMDRKSV-EGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFS 811
FKEE +A QAL+ + + +G + V + S S +K +F+ LP+
Sbjct: 250 FKEESAATQALKRNGAQIADGFRIRVDLASETS------------SRDKRSVFVGNLPYK 297
Query: 812 CTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAV 858
+ +E+ G++ +R+V ++ G KG YV +EN A+
Sbjct: 298 VEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL 345
Score = 48.1 bits (113), Expect = 4e-05
Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 51/267 (19%)
Query: 567 QKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQRKRARAEKKA-----LKKKKKIRGPE 621
+K + + N ++ K A++E+AL + E+ +K+ + K + + +K + E
Sbjct: 104 KKVKAKKKHTNAEK-KLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTE 162
Query: 622 KRGADEDDEKEWGDDEEEQPSKRRRVENSIPAA-------------GETQNVEV-----A 663
+ + + +EE ++R ++P G+ ++V A
Sbjct: 163 DTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPA 222
Query: 664 AGPAGKCAAV---DVEPPSKQ-------KEKAAS---LKRDMPKVL-----------HDS 699
G K A + P K KE++A+ LKR+ ++ S
Sbjct: 223 EGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETS 282
Query: 700 SKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSN-RGDFRGYCYVEFKEEKS 758
S+D +VFV NLPY ++E + + F CG ++ +R + G +G+ YV F+ S
Sbjct: 283 SRDKRSVFVGNLPYKVEE--SAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDS 340
Query: 759 ALQALEMDRKSVEGRPMFVSPCVDKSK 785
AL+++ + GR + V V+K K
Sbjct: 341 VHLALKLNNSELMGRKLRVMRSVNKEK 367
Score = 31.6 bits (70), Expect = 3.7
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 19/84 (22%)
Query: 803 LFISGLPFSCTKEELEEICKAHGTVKDLR---LVTNRAGKPKGL---------------A 844
+F+ LP +C K++L+ K +G ++ +R L+ K L A
Sbjct: 187 VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINA 246
Query: 845 YVEYENESQASQAVMKMDGMTIKE 868
YV ++ ES A+QA +K +G I +
Sbjct: 247 YVVFKEESAATQA-LKRNGAQIAD 269
>gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens]
Length = 593
Score = 60.1 bits (144), Expect = 1e-08
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 20/159 (12%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEM 765
VFV +P + E + L P+FEA G + ++R + G RGY +V + + A +A+
Sbjct: 73 VFVGKIPRDVYEDE--LVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVR- 129
Query: 766 DRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEE-LEEICKAH 824
+ + E RP ++ S++ +LFI G+P +EE LEEI K
Sbjct: 130 ELNNYEIRP--------------GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVT 175
Query: 825 GTVKDLRLVTNRAGKPK--GLAYVEYENESQASQAVMKM 861
V D+ + + A K K G A+VEYE+ A+ A K+
Sbjct: 176 EGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 214
Score = 40.0 bits (92), Expect = 0.010
Identities = 19/66 (28%), Positives = 41/66 (62%)
Query: 802 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861
++F+ +P ++EL + +A G + +LRL+ + GK +G A+V Y ++ +A +AV ++
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVREL 131
Query: 862 DGMTIK 867
+ I+
Sbjct: 132 NNYEIR 137
>gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens]
Length = 524
Score = 60.1 bits (144), Expect = 1e-08
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 20/159 (12%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALEM 765
VFV +P + E + L P+FEA G + ++R + G RGY +V + + A +A+
Sbjct: 73 VFVGKIPRDVYEDE--LVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVR- 129
Query: 766 DRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEE-LEEICKAH 824
+ + E RP ++ S++ +LFI G+P +EE LEEI K
Sbjct: 130 ELNNYEIRP--------------GRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVT 175
Query: 825 GTVKDLRLVTNRAGKPK--GLAYVEYENESQASQAVMKM 861
V D+ + + A K K G A+VEYE+ A+ A K+
Sbjct: 176 EGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 214
Score = 40.0 bits (92), Expect = 0.010
Identities = 19/66 (28%), Positives = 41/66 (62%)
Query: 802 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861
++F+ +P ++EL + +A G + +LRL+ + GK +G A+V Y ++ +A +AV ++
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVREL 131
Query: 862 DGMTIK 867
+ I+
Sbjct: 132 NNYEIR 137
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 60.1 bits (144), Expect = 1e-08
Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 10/187 (5%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALE- 764
VF+ NL S+ + L F A G ++ + + G +GY +V F+ +++A +A+E
Sbjct: 101 VFIKNLDKSID--NKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEK 157
Query: 765 MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAH 824
M+ + R +FV + + + + + E ++I E L+E+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKER---EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 825 GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVP 884
G ++++ + GK KG +V YE A++AV +M+G I II V + Q+KV
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA---QKKVE 271
Query: 885 EKPETRK 891
+ E ++
Sbjct: 272 RQAELKR 278
Score = 55.5 bits (132), Expect = 2e-07
Identities = 56/257 (21%), Positives = 116/257 (45%), Gaps = 23/257 (8%)
Query: 689 KRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGY 748
+++ L +K+ V++ N + + D L+ LF G+ + ++ + G +G+
Sbjct: 176 RKEREAELGAKAKEFTNVYIKN--FGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGF 233
Query: 749 CYVEFKEEKSALQALE-MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHK----- 802
+V +++ + A +A+E M+ K + G+ +FV K + ++ R L++ +
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER-QAELKRKFEQLKQERISRYQ 292
Query: 803 ---LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVM 859
L+I L + E+L + G++ +++ G+ KG +V + + +A++AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVT 351
Query: 860 KMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLPQTYGARGKGRTQL--SLLP 917
+M+G + + VA++ QRK E RKA + + G R + P
Sbjct: 352 EMNGRIVGSKPLYVALA---QRK-----EERKAHLTNQYMQRVAGMRALPANAILNQFQP 403
Query: 918 RALQRPSAAAPQAENGP 934
A A PQA+ P
Sbjct: 404 AAGGYFVPAVPQAQGRP 420
Score = 49.7 bits (117), Expect = 1e-05
Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 20/198 (10%)
Query: 699 SSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIR---PIFSNRGDFRGYCYVEFKE 755
SS +++V +L + E L F G V+ IR + + R GY YV F++
Sbjct: 6 SSYPMASLYVGDLHSDVTE--AMLYEKFSPAGPVLSIRVCRDMITRRS--LGYAYVNFQQ 61
Query: 756 EKSALQALE-MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTK 814
A +AL+ M+ ++G+P+ + + ++P + +FI L S
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI---MWSQRDPSLRKSGVG------NVFIKNLDKSIDN 112
Query: 815 EELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 874
+ L + A G + ++V + G KG A+V +E + A +A+ KM+GM + + KV
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDR--KVF 169
Query: 875 ISNPPQRKVPEKPETRKA 892
+ RK E KA
Sbjct: 170 VGRFKSRKEREAELGAKA 187
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 60.1 bits (144), Expect = 1e-08
Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 10/187 (5%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALE- 764
VF+ NL S+ + L F A G ++ + + G +GY +V F+ +++A +A+E
Sbjct: 101 VFIKNLDKSID--NKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEK 157
Query: 765 MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAH 824
M+ + R +FV + + + + + E ++I E L+E+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKER---EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 825 GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVP 884
G ++++ + GK KG +V YE A++AV +M+G I II V + Q+KV
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA---QKKVE 271
Query: 885 EKPETRK 891
+ E ++
Sbjct: 272 RQAELKR 278
Score = 55.5 bits (132), Expect = 2e-07
Identities = 56/257 (21%), Positives = 116/257 (45%), Gaps = 23/257 (8%)
Query: 689 KRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGY 748
+++ L +K+ V++ N + + D L+ LF G+ + ++ + G +G+
Sbjct: 176 RKEREAELGAKAKEFTNVYIKN--FGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGF 233
Query: 749 CYVEFKEEKSALQALE-MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHK----- 802
+V +++ + A +A+E M+ K + G+ +FV K + ++ R L++ +
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER-QAELKRKFEQLKQERISRYQ 292
Query: 803 ---LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVM 859
L+I L + E+L + G++ +++ G+ KG +V + + +A++AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVT 351
Query: 860 KMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLPQTYGARGKGRTQL--SLLP 917
+M+G + + VA++ QRK E RKA + + G R + P
Sbjct: 352 EMNGRIVGSKPLYVALA---QRK-----EERKAHLTNQYMQRVAGMRALPANAILNQFQP 403
Query: 918 RALQRPSAAAPQAENGP 934
A A PQA+ P
Sbjct: 404 AAGGYFVPAVPQAQGRP 420
Score = 49.7 bits (117), Expect = 1e-05
Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 20/198 (10%)
Query: 699 SSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIR---PIFSNRGDFRGYCYVEFKE 755
SS +++V +L + E L F G V+ IR + + R GY YV F++
Sbjct: 6 SSYPMASLYVGDLHSDVTE--AMLYEKFSPAGPVLSIRVCRDMITRRS--LGYAYVNFQQ 61
Query: 756 EKSALQALE-MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTK 814
A +AL+ M+ ++G+P+ + + ++P + +FI L S
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI---MWSQRDPSLRKSGVG------NVFIKNLDKSIDN 112
Query: 815 EELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 874
+ L + A G + ++V + G KG A+V +E + A +A+ KM+GM + + KV
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDR--KVF 169
Query: 875 ISNPPQRKVPEKPETRKA 892
+ RK E KA
Sbjct: 170 VGRFKSRKEREAELGAKA 187
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 60.1 bits (144), Expect = 1e-08
Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 10/187 (5%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALE- 764
VF+ NL S+ + L F A G ++ + + G +GY +V F+ +++A +A+E
Sbjct: 101 VFIKNLDKSID--NKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEK 157
Query: 765 MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAH 824
M+ + R +FV + + + + + E ++I E L+E+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKER---EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 825 GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVP 884
G ++++ + GK KG +V YE A++AV +M+G I II V + Q+KV
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA---QKKVE 271
Query: 885 EKPETRK 891
+ E ++
Sbjct: 272 RQAELKR 278
Score = 55.5 bits (132), Expect = 2e-07
Identities = 56/257 (21%), Positives = 116/257 (45%), Gaps = 23/257 (8%)
Query: 689 KRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGY 748
+++ L +K+ V++ N + + D L+ LF G+ + ++ + G +G+
Sbjct: 176 RKEREAELGAKAKEFTNVYIKN--FGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGF 233
Query: 749 CYVEFKEEKSALQALE-MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHK----- 802
+V +++ + A +A+E M+ K + G+ +FV K + ++ R L++ +
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER-QAELKRKFEQLKQERISRYQ 292
Query: 803 ---LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVM 859
L+I L + E+L + G++ +++ G+ KG +V + + +A++AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVT 351
Query: 860 KMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLPQTYGARGKGRTQL--SLLP 917
+M+G + + VA++ QRK E RKA + + G R + P
Sbjct: 352 EMNGRIVGSKPLYVALA---QRK-----EERKAHLTNQYMQRVAGMRALPANAILNQFQP 403
Query: 918 RALQRPSAAAPQAENGP 934
A A PQA+ P
Sbjct: 404 AAGGYFVPAVPQAQGRP 420
Score = 49.7 bits (117), Expect = 1e-05
Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 20/198 (10%)
Query: 699 SSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIR---PIFSNRGDFRGYCYVEFKE 755
SS +++V +L + E L F G V+ IR + + R GY YV F++
Sbjct: 6 SSYPMASLYVGDLHSDVTE--AMLYEKFSPAGPVLSIRVCRDMITRRS--LGYAYVNFQQ 61
Query: 756 EKSALQALE-MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTK 814
A +AL+ M+ ++G+P+ + + ++P + +FI L S
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI---MWSQRDPSLRKSGVG------NVFIKNLDKSIDN 112
Query: 815 EELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 874
+ L + A G + ++V + G KG A+V +E + A +A+ KM+GM + + KV
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDR--KVF 169
Query: 875 ISNPPQRKVPEKPETRKA 892
+ RK E KA
Sbjct: 170 VGRFKSRKEREAELGAKA 187
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 59.7 bits (143), Expect = 1e-08
Identities = 57/276 (20%), Positives = 117/276 (42%), Gaps = 27/276 (9%)
Query: 689 KRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGY 748
+R+ L + + ++V NLP + E L+ LF G+++ ++ + N G R +
Sbjct: 176 RREREAELGARALEFTNIYVKNLPVDVDEQG--LQDLFSQFGKMLSVKVMRDNSGHSRCF 233
Query: 749 CYVEFKEEKSALQAL-EMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKH------ 801
+V F++ + A +A+ M+ K V GR ++ + + + R+ +
Sbjct: 234 GFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQG 293
Query: 802 -KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 860
L++ L S ++L + +G + +++T G KG +V + + +A++AV +
Sbjct: 294 VNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTE 352
Query: 861 MDGMTIKENIIKVAISNPPQRK-------VPEKPETRKAPGGPMLLPQTYGARGKGRTQL 913
M+G + + VA++ + + ++ T + P+L G +
Sbjct: 353 MNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLL--------GSFQQPS 404
Query: 914 SLLPRALQRPSAAAPQAENGPAAAPAVAAPAATEAP 949
S A+ +P A A GP P AP T P
Sbjct: 405 SYFLPAMPQPPAQAAYYGCGP-VTPTQPAPRWTSQP 439
Score = 39.7 bits (91), Expect = 0.014
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 747 GYCYVEFKEEKSALQALE-MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFI 805
GY Y+ F++ A +AL+ M+ + ++G+P+ + + ++P + +FI
Sbjct: 53 GYAYINFQQPADAERALDTMNFEMLKGQPIRI---MWSQRDPGLRKSGVGN------IFI 103
Query: 806 SGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMT 865
L S + L + G + ++ + G +G +V +E A QA+ M+GM
Sbjct: 104 KNLEDSIDNKALYDTFSTFGNILSCKVACDEHGS-RGFGFVHFETHEAAQQAINTMNGML 162
Query: 866 IKENIIKV 873
+ + + V
Sbjct: 163 LNDRKVFV 170
>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
Length = 382
Score = 59.7 bits (143), Expect = 1e-08
Identities = 45/189 (23%), Positives = 90/189 (47%), Gaps = 13/189 (6%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQAL-E 764
+F+ NL S+ + L LF A G ++ + + + G +GY YV F +A +A+
Sbjct: 108 IFIKNLDKSID--NRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAANRAIWH 164
Query: 765 MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKH--KLFISGLPFSCTKEELEEICK 822
M+ + R ++V + K P+ + T +F+ + E+L+E+
Sbjct: 165 MNGVRLNNRQVYVG----RFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFC 220
Query: 823 AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRK 882
+G + ++++ + +GK KG +V YE A +AV+ + G +I ++ V + Q+K
Sbjct: 221 EYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA---QKK 277
Query: 883 VPEKPETRK 891
+ E R+
Sbjct: 278 IERLAELRR 286
Score = 50.4 bits (119), Expect = 8e-06
Identities = 42/184 (22%), Positives = 87/184 (47%), Gaps = 11/184 (5%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQA-LE 764
VFV N+ + D KL+ LF G ++ I G +G+ +V ++ ++A +A L+
Sbjct: 201 VFVKNIGDDID--DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLD 258
Query: 765 MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHK-------LFISGLPFSCTKEEL 817
+ KS++G+ ++V K + R+ K K ++I L + E+L
Sbjct: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKL 318
Query: 818 EEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 877
+E + G++ +++ G+ KG V + + +A++AV +M+G + + V +
Sbjct: 319 KEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Query: 878 PPQR 881
+R
Sbjct: 378 ARRR 381
>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
Length = 386
Score = 59.3 bits (142), Expect = 2e-08
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 11/195 (5%)
Query: 705 TVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQAL- 763
T++V NL + E + LF G + I G+ YC+VEF E + A AL
Sbjct: 8 TLYVGNLSRDVTE--ALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFHEHRHAAAALA 64
Query: 764 EMDRKSVEGRPMFV----SPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEE 819
M+ + + G+ + V +P K V S + +F+ L T E+++
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 124
Query: 820 ICKAHGTVKDLRLVTNRA-GKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV--AIS 876
G + D R+V + A GK KG +V + N+ A A+ +M G + I+ A
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 877 NPPQRKVPEKPETRK 891
PP K + T++
Sbjct: 185 KPPAPKSTYESNTKQ 199
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 59.3 bits (142), Expect = 2e-08
Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 19/162 (11%)
Query: 702 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSN-RGDFRGYCYVEFKEEKSAL 760
D+I +FV +P ++E D L+P+FE G + ++ I G +G ++ + SAL
Sbjct: 5 DAIKLFVGQIPRHLEEKD--LKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSAL 62
Query: 761 QALEM--DRKSVEG--RPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEE 816
+A ++K++ G RP+ V P +S+ D KLF+ L T E+
Sbjct: 63 KAQSALHEQKTLPGMNRPIQVKPADSESRGED------------RKLFVGMLGKQQTDED 110
Query: 817 LEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAV 858
+ ++ + GT+ + ++ G KG A+V+++ ++A A+
Sbjct: 111 VRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAI 152
Score = 35.8 bits (81), Expect = 0.20
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA-GKPKGLAYVEYENESQASQAVMKM 861
+FI LP T E+ ++ G V ++ +RA + K +V ++N + A A+ M
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 862 DGMTIKENIIKVAISNPPQRKVP 884
+G I +KV + P P
Sbjct: 442 NGFQIGMKRLKVQLKRPKDANRP 464
>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
Length = 481
Score = 57.8 bits (138), Expect = 5e-08
Identities = 58/253 (22%), Positives = 107/253 (42%), Gaps = 32/253 (12%)
Query: 702 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSN-RGDFRGYCYVEFKEEKSAL 760
D+I +FV +P + E D L+PLFE G + ++ + G +G ++ + SAL
Sbjct: 44 DAIKLFVGQIPRGLDEQD--LKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSAL 101
Query: 761 QALEM--DRKSVEG--RPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEE 816
+A ++K++ G RP+ V P + + D KLF+ L +E+
Sbjct: 102 KAQSALHEQKTLPGMNRPIQVKPAASEGRGED------------RKLFVGMLGKQQGEED 149
Query: 817 LEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKEN-----II 871
+ + + G +++ ++ + G KG A+V++ ++ +A A+ + G ++
Sbjct: 150 VRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVV 209
Query: 872 KVAISNPPQRKVPEKPETRKAPGGPMLLPQTYGARGKGRTQLSLLPRALQRPSAAAPQAE 931
K+A +R + + G P GA G T A+ + AA A
Sbjct: 210 KLA-DTDRERALRRMQQMAGHLGAFHPAPLPLGACGAYTT-------AILQHQAALLAAA 261
Query: 932 NGPAAAPAVAAPA 944
GP P A A
Sbjct: 262 QGPGLGPVAAVAA 274
Score = 34.7 bits (78), Expect = 0.44
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA-GKPKGLAYVEYENESQASQAVMKM 861
LFI LP EL + G V ++ +RA + K +V ++N + A A+ M
Sbjct: 398 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAM 457
Query: 862 DGMTIKENIIKVAISNPPQRKVP 884
+G I +KV + P P
Sbjct: 458 NGFQIGMKRLKVQLKRPKDANRP 480
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 57.8 bits (138), Expect = 5e-08
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 26/177 (14%)
Query: 746 RGYCYVEFKEEKSALQA---LEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHK 802
RG+C++E+++ KSA QA L + V G + V D + PD +V +
Sbjct: 191 RGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVE-WADPVEEPDPEVMA-----KVKV 244
Query: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 862
LF+ L + T+E LE+ G ++ R K K A+V +E+ A +A+ +M+
Sbjct: 245 LFVRNLATTVTEEILEKSFSEFGKLE-------RVKKLKDYAFVHFEDRGAAVKAMDEMN 297
Query: 863 GMTIKENIIKVAISNPPQRKVPEKPETRKAPGG----------PMLLPQTYGARGKG 909
G I+ I++ ++ PP +K E+ R+A P +P RG+G
Sbjct: 298 GKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG 354
Score = 56.2 bits (134), Expect = 1e-07
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 28/190 (14%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSN-RGDFRGYCYVEFKEEKSALQALE 764
VFV +P + E + L PLFE G + +R + G RGY ++ F +++A +A++
Sbjct: 66 VFVGKIPRDLYEDE--LVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123
Query: 765 MDRKSVEGRP-MFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEE-LEEICK 822
+ S E RP + C+ + N +LF+ +P + TKE LEE K
Sbjct: 124 LC-DSYEIRPGKHLGVCISVANN---------------RLFVGSIPKNKTKENILEEFSK 167
Query: 823 AHGTVKDLRLV-----TNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK--ENIIKVAI 875
G + L V + K +G ++EYE+ A+QA ++ +K N++ V
Sbjct: 168 VTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEW 227
Query: 876 SNPPQRKVPE 885
++P + PE
Sbjct: 228 ADPVEEPDPE 237
Score = 32.0 bits (71), Expect = 2.9
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 802 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTN-RAGKPKGLAYVEYENESQASQAVMK 860
++F+ +P ++EL + + G + DLRL+ + +G+ +G A++ + + A +AV
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 861 MDGMTIK 867
D I+
Sbjct: 125 CDSYEIR 131
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 57.8 bits (138), Expect = 5e-08
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 26/177 (14%)
Query: 746 RGYCYVEFKEEKSALQA---LEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHK 802
RG+C++E+++ KSA QA L + V G + V D + PD +V +
Sbjct: 292 RGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVE-WADPVEEPDPEVMA-----KVKV 345
Query: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 862
LF+ L + T+E LE+ G ++ R K K A+V +E+ A +A+ +M+
Sbjct: 346 LFVRNLATTVTEEILEKSFSEFGKLE-------RVKKLKDYAFVHFEDRGAAVKAMDEMN 398
Query: 863 GMTIKENIIKVAISNPPQRKVPEKPETRKAPGG----------PMLLPQTYGARGKG 909
G I+ I++ ++ PP +K E+ R+A P +P RG+G
Sbjct: 399 GKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG 455
Score = 56.2 bits (134), Expect = 1e-07
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 28/190 (14%)
Query: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSN-RGDFRGYCYVEFKEEKSALQALE 764
VFV +P + E + L PLFE G + +R + G RGY ++ F +++A +A++
Sbjct: 167 VFVGKIPRDLYEDE--LVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224
Query: 765 MDRKSVEGRP-MFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEE-LEEICK 822
+ S E RP + C+ + N +LF+ +P + TKE LEE K
Sbjct: 225 LC-DSYEIRPGKHLGVCISVANN---------------RLFVGSIPKNKTKENILEEFSK 268
Query: 823 AHGTVKDLRLV-----TNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK--ENIIKVAI 875
G + L V + K +G ++EYE+ A+QA ++ +K N++ V
Sbjct: 269 VTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEW 328
Query: 876 SNPPQRKVPE 885
++P + PE
Sbjct: 329 ADPVEEPDPE 338
Score = 32.0 bits (71), Expect = 2.9
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 802 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTN-RAGKPKGLAYVEYENESQASQAVMK 860
++F+ +P ++EL + + G + DLRL+ + +G+ +G A++ + + A +AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 861 MDGMTIK 867
D I+
Sbjct: 226 CDSYEIR 232
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,142,369
Number of Sequences: 37866
Number of extensions: 1766178
Number of successful extensions: 18693
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 609
Number of HSP's that attempted gapping in prelim test: 11534
Number of HSP's gapped (non-prelim): 5112
length of query: 963
length of database: 18,247,518
effective HSP length: 112
effective length of query: 851
effective length of database: 14,006,526
effective search space: 11919553626
effective search space used: 11919553626
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.