| Name: OPTC | Sequence: fasta or formatted (332aa) | NCBI GI: 7657419 | |
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Description: opticin precursor
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Referenced in:
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 5.4 18 2 C cysteine 1.8 6 1 D aspartate 6.6 22 2 E glutamate 6.0 20 2 F phenylalanine 3.6 12 1 G glycine 4.2 14 1 H histidine 1.5 5 1 I isoleucine 5.1 17 1 K lysine 2.7 9 1 L leucine 16.6 55 3 M methionine 1.5 5 1 N asparagine 5.1 17 2 P proline 8.4 28 2 Q glutamine 3.6 12 1 R arginine 7.8 26 2 S serine 8.1 27 2 T threonine 5.4 18 2 V valine 3.9 13 1 W tryptophan 0.0 0 0 Y tyrosine 2.4 8 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 opticin precursor EPYC 0.341 dermatan sulfate proteoglycan 3 precursor OGN 0.292 osteoglycin preproprotein OGN 0.292 osteoglycin preproprotein PRELP 0.104 proline arginine-rich end leucine-rich repeat protei... PRELP 0.104 proline arginine-rich end leucine-rich repeat protein... OMD 0.101 osteomodulin DCN 0.096 decorin isoform a preproprotein DCN 0.096 decorin isoform a preproprotein LUM 0.096 lumican precursor LRRTM3 0.090 leucine rich repeat transmembrane neuronal 3 BGN 0.088 biglycan preproprotein PODNL1 0.085 podocan-like 1 isoform 2 PODNL1 0.085 podocan-like 1 isoform 1 ASPN 0.085 asporin KERA 0.083 keratocan PXDNL 0.083 peroxidasin homolog-like LRRTM4 0.082 leucine rich repeat transmembrane neuronal 4 isofor... LRRTM4 0.082 leucine rich repeat transmembrane neuronal 4 isofor... PODNL1 0.075 podocan-like 1 isoform 3 SLIT1 0.075 slit homolog 1 LRRTM1 0.074 leucine rich repeat transmembrane neuronal 1 ECM2 0.074 extracellular matrix protein 2 precursor PODN 0.074 podocan LRRTM2 0.072 leucine rich repeat transmembrane neuronal 2 SLITRK1 0.069 slit and trk like 1 protein SLIT3 0.069 slit homolog 3 SLITRK5 0.069 SLIT and NTRK-like family, member 5 FLRT3 0.068 fibronectin leucine rich transmembrane protein 3 pre... FLRT3 0.068 fibronectin leucine rich transmembrane protein 3 prec...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
