Guide to the Human Genome
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Name: OPTC Sequence: fasta or formatted (332aa) NCBI GI: 7657419
Description:

opticin precursor

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         18           2
 C cysteine            1.8          6           1
 D aspartate           6.6         22           2
 E glutamate           6.0         20           2
 F phenylalanine       3.6         12           1
 G glycine             4.2         14           1
 H histidine           1.5          5           1
 I isoleucine          5.1         17           1
 K lysine              2.7          9           1
 L leucine            16.6         55           3
 M methionine          1.5          5           1
 N asparagine          5.1         17           2
 P proline             8.4         28           2
 Q glutamine           3.6         12           1
 R arginine            7.8         26           2
 S serine              8.1         27           2
 T threonine           5.4         18           2
 V valine              3.9         13           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   opticin precursor 
EPYC                  0.341   dermatan sulfate proteoglycan 3 precursor 
OGN                   0.292   osteoglycin preproprotein 
OGN                   0.292   osteoglycin preproprotein 
PRELP                 0.104   proline arginine-rich end leucine-rich repeat protei...
PRELP                 0.104   proline arginine-rich end leucine-rich repeat protein...
OMD                   0.101   osteomodulin 
DCN                   0.096   decorin isoform a preproprotein 
DCN                   0.096   decorin isoform a preproprotein 
LUM                   0.096   lumican precursor 
LRRTM3                0.090   leucine rich repeat transmembrane neuronal 3 
BGN                   0.088   biglycan preproprotein 
PODNL1                0.085   podocan-like 1 isoform 2 
PODNL1                0.085   podocan-like 1 isoform 1 
ASPN                  0.085   asporin 
KERA                  0.083   keratocan 
PXDNL                 0.083   peroxidasin homolog-like 
LRRTM4                0.082   leucine rich repeat transmembrane neuronal 4 isofor...
LRRTM4                0.082   leucine rich repeat transmembrane neuronal 4 isofor...
PODNL1                0.075   podocan-like 1 isoform 3 
SLIT1                 0.075   slit homolog 1 
LRRTM1                0.074   leucine rich repeat transmembrane neuronal 1 
ECM2                  0.074   extracellular matrix protein 2 precursor 
PODN                  0.074   podocan 
LRRTM2                0.072   leucine rich repeat transmembrane neuronal 2 
SLITRK1               0.069   slit and trk like 1 protein 
SLIT3                 0.069   slit homolog 3 
SLITRK5               0.069   SLIT and NTRK-like family, member 5 
FLRT3                 0.068   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.068   fibronectin leucine rich transmembrane protein 3 prec...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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