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Search of human proteins with 7657385
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657385 CCR4-NOT transcription complex, subunit 2 [Homo
sapiens]
(540 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657385 CCR4-NOT transcription complex, subunit 2 [Homo sapiens] 1110 0.0
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 60 5e-09
gi|28559039 mediator complex subunit 1 [Homo sapiens] 48 2e-05
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens] 42 0.001
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 40 0.007
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 38 0.027
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 38 0.027
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 37 0.060
gi|7661968 epsin 4 [Homo sapiens] 36 0.078
gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens] 36 0.078
gi|33286444 mastermind-like 2 [Homo sapiens] 36 0.10
gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens] 36 0.10
gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens] 36 0.10
gi|239757105 PREDICTED: hypothetical protein [Homo sapiens] 35 0.13
gi|239751611 PREDICTED: hypothetical protein XP_002347929 [Homo ... 35 0.13
gi|151301154 mucin 6, gastric [Homo sapiens] 35 0.13
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 35 0.17
gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 ... 35 0.17
gi|7019381 fibronectin leucine rich transmembrane protein 2 [Hom... 35 0.17
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 35 0.23
gi|83367077 mucin 16 [Homo sapiens] 34 0.30
gi|134152725 receptor tyrosine kinase-like orphan receptor 1 iso... 34 0.30
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 34 0.30
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 34 0.30
gi|56788377 nucleoporin like 1 isoform b [Homo sapiens] 34 0.39
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 34 0.39
gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens] 33 0.51
gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens] 33 0.51
gi|11067749 bromodomain containing protein 3 [Homo sapiens] 33 0.51
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.51
>gi|7657385 CCR4-NOT transcription complex, subunit 2 [Homo sapiens]
Length = 540
Score = 1110 bits (2870), Expect = 0.0
Identities = 540/540 (100%), Positives = 540/540 (100%)
Query: 1 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA 60
MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
Sbjct: 1 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA 60
Query: 61 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
Sbjct: 61 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 121 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ 180
LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ 180
Query: 181 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE 240
PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
Sbjct: 181 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE 240
Query: 241 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS 300
GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
Sbjct: 241 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS 300
Query: 301 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL 360
NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
Sbjct: 301 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL 360
Query: 361 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE 420
LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
Sbjct: 361 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE 420
Query: 421 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT 480
YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
Sbjct: 421 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT 480
Query: 481 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF 540
RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
Sbjct: 481 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF 540
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 60.1 bits (144), Expect = 5e-09
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 438 RYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERG 497
R + LF+++Y G Q LAA L + WR+H + +W R EP T+ +E+G
Sbjct: 665 RLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHE--EPKTITDEFEQG 722
Query: 498 TYYFFDCLNWRKVAKE-FHLEYDKLEER 524
TY +FD W + KE F EY LE+R
Sbjct: 723 TYIYFDYEKWGQRKKEGFTFEYRYLEDR 750
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 48.1 bits (113), Expect = 2e-05
Identities = 71/295 (24%), Positives = 108/295 (36%), Gaps = 30/295 (10%)
Query: 20 SMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQ 79
S G + EG S +MY SQ S +S+ S + G+ + +G
Sbjct: 1109 STSGKMKSSKSEGSSSSKLSSSMYSSQGSSGSSQSKN----SSQSGGKPGSSPITKHGLS 1164
Query: 80 S-ALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRN 138
S + M+ + +N SLS+ PSH P G + L +P P +P P +
Sbjct: 1165 SGSSSTKMKPQGKPSSLMNPSLSKPNISPSHSRPPGG--SDKLASPMKP----VPGTPPS 1218
Query: 139 MMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNR 198
S + G G + + SSSG+ S + S K PS T +S S
Sbjct: 1219 SKAKSPISSGSGGSHMSGTSSSSGMKSSSGLGSSGSLSQKTPPSSNSCTASSSSFSSSGS 1278
Query: 199 NQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPY 258
+ + N SS G S N A+ D+ + G P G P
Sbjct: 1279 SMSSSQNQHGSS---KGKSPSRN----KKPSLTAVIDK-LKHGVVTSGP-----GGEDPL 1325
Query: 259 VGMVTKPANEQSQDFSI-HNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST 312
G + N S S HN + G ++ +D KS ++TSG + S+
Sbjct: 1326 DGQMGVSTNSSSHPMSSKHN-----MSGGEFQGKREKSDKDKSKVSTSGSSVDSS 1375
Score = 35.8 bits (81), Expect = 0.10
Identities = 62/273 (22%), Positives = 104/273 (38%), Gaps = 34/273 (12%)
Query: 90 SNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGI-LPMNPRNMMNHSQVGQG 148
S+N P + + G++ P + P ++ TPP P I +P + S Q
Sbjct: 1026 SSNRPFTPPTSTGGSKSPGSAGRSQTPPGVA--TPPIPKITIQIPKGTVMVGKPSSHSQY 1083
Query: 149 IGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQ-AFGMNNS 207
S ++S S S + SS S K + S+ + +S M +Q + G + S
Sbjct: 1084 TSSGSVSSSGSKSHHSHSSSSSSSASTSGKMKSSKSEGSSSSKLSSSMYSSQGSSGSSQS 1143
Query: 208 LSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPAN 267
+S+ G GS +T LS + + + G P+ L+NP + ++P
Sbjct: 1144 KNSSQSGGKPGSSPITKHGLSSG---SSSTKMKPQGKPSSLMNPSLSKPNISPSHSRPPG 1200
Query: 268 EQSQDFSIHNEDFPALP-------------GSSYKDPTSSNDDSKSN--LNTSGKT---- 308
S + + P P G S+ TSS+ KS+ L +SG
Sbjct: 1201 G-SDKLASPMKPVPGTPPSSKAKSPISSGSGGSHMSGTSSSSGMKSSSGLGSSGSLSQKT 1259
Query: 309 -------TSSTDGPKFPGDKSSTTQNNNQQKKG 334
T+S+ G S++QN + KG
Sbjct: 1260 PPSSNSCTASSSSFSSSGSSMSSSQNQHGSSKG 1292
>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
Length = 1426
Score = 42.0 bits (97), Expect = 0.001
Identities = 63/244 (25%), Positives = 95/244 (38%), Gaps = 31/244 (12%)
Query: 52 HRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVT 111
H+ + ML SPS + + Q + L G + G + P L + + L S
Sbjct: 869 HQVQSPMLGSPSGNLKSPQTPSQLAGMLA--GPAAAASIKSPPVLGSAAASPVHLKSPSL 926
Query: 112 PTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSP 171
P S PP S GI P NH + + P+ ++ S G P S P
Sbjct: 927 PAPSPGWTSSPKPPLQSPGIPP-------NH-KAPLTMASPAMLGNVESGGPPPPTASQP 978
Query: 172 SIICMPKQQPSRQPFTV--------NSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVT 223
+ + +P PS P+T+ N +S M+R F M + S+ +++ D + V
Sbjct: 979 ASVNIPGSLPSSTPYTMPPEPTLSQNPLS-IMMSRMSKFAMPS--STPLYH--DAIKTVA 1033
Query: 224 GLDLSDFPA----LADRNRREGSGNPTPLINP-LAGRAPYVGMVTKPANEQSQDFSIHNE 278
D PA L N G G T NP ++G P V M T +Q S H+
Sbjct: 1034 SSDDDSPPARSPNLPSMNNMPGMGINTQ--NPRISGPNPVVPMPTLSPMGMTQPLS-HSN 1090
Query: 279 DFPA 282
P+
Sbjct: 1091 QMPS 1094
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 39.7 bits (91), Expect = 0.007
Identities = 82/378 (21%), Positives = 134/378 (35%), Gaps = 45/378 (11%)
Query: 54 SEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPT 113
S+ M A P+T+ + + +G S+ TP + S S T S + T
Sbjct: 1838 SKDTMPAPPTTTSAFVELSTTSHGSPSS-----------TPTTHFSASSTTLGRSEESTT 1886
Query: 114 TGVPTMSLHTPPSPSRGILP-MNPRNMMNHSQVG--QGIGIPSRTNSMSSSGLGSPNRSS 170
++ T PSP+R + + HS G Q + P S ++SG +R+S
Sbjct: 1887 VHSSPVATATTPSPARSTTSGLVEESTAYHSSPGSTQTMHFP---ESSTASGRSEESRTS 1943
Query: 171 PS----IICMPKQQPS---RQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVT 223
S I P S +P + +S G + S S + S++ T
Sbjct: 1944 HSSTTHTISSPPSTTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQDAT 2003
Query: 224 GLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPA-NEQSQDF--SIHNEDF 280
G + PA + + G +P+ + G T P +E+S F S +
Sbjct: 2004 GTIV--LPARSTTSVLLGESTTSPISSGSMETTALPGSTTTPGLSEKSTTFHSSPRSPAT 2061
Query: 281 PALPGSSYKDPTSSNDDSKSNLNTSGKTTSSTDGPKFPG-DKSSTTQNNNQQKKGIQVLP 339
P S+ S + + S TT+ D PG + STT +++ +LP
Sbjct: 2062 TLSPASTTSSGVSEESTTSHSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLP 2121
Query: 340 DGRVTNIPQGMVTDQF------------GMIGLLTFIRAAET---DPGMVHLALGSDLTT 384
T+ P T G L+F + + T PG H L D TT
Sbjct: 2122 ASTTTSGPSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTLFPDSTT 2181
Query: 385 LGLNLNSPENLYPKFASP 402
+ + ++ SP
Sbjct: 2182 SSGIVEASTRVHSSTGSP 2199
Score = 33.5 bits (75), Expect = 0.51
Identities = 75/350 (21%), Positives = 123/350 (35%), Gaps = 34/350 (9%)
Query: 82 LGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILP-MNPRNMM 140
L G ++TP + S S T S + T ++ T PSP+R + +
Sbjct: 3412 LSTTSHGSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATATTPSPARSTTSGLVEESTT 3471
Query: 141 NHSQVG--QGIGIPSRTNSMSSSGLGSPNRSSPS-----IICMPKQQPS--RQPFTVNSM 191
HS G Q + P S ++SG G + +S S I P + +P + +S
Sbjct: 3472 YHSSPGSTQTMHFP---ESDTTSGRGEESTTSHSSTTHTISSAPSTTSALVEEPTSYHSS 3528
Query: 192 SGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINP 251
G + S S + S++ TG + PA + + G +P+ +
Sbjct: 3529 PGSTATTHFPDSSTTSGRSEESTASHSSQDATGTIV--LPARSTTSVLLGESTTSPISSG 3586
Query: 252 LAGRAPYVGMVTKPA-NEQSQDF--SIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKT 308
G T P +E+S F S + P S+ S + + S T
Sbjct: 3587 SMETTALPGSTTTPGLSEKSTTFHSSPRSPATTLSPASTTSSGVSEESTTSHSRPGSTHT 3646
Query: 309 TSSTDGPKFPG-DKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIG-------- 359
T+ D PG + STT +++ +LP T+ T G
Sbjct: 3647 TAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLPASTTTSGSSQESTTSHSSSGSTDTALSP 3706
Query: 360 ----LLTFIRAAET---DPGMVHLALGSDLTTLGLNLNSPENLYPKFASP 402
L+F + + T PG H L D TT + + ++ SP
Sbjct: 3707 GSTTALSFGQESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSP 3756
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 37.7 bits (86), Expect = 0.027
Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 95 QLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIP-S 153
Q ++ Q Q V P V SL SPS G P++M Q G P S
Sbjct: 364 QQQQTAVQTAQAAQMVAPGVQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSS 423
Query: 154 RTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGM 196
+ NS SSG P S S + P QPS+ P T + F +
Sbjct: 424 QPNSNVSSG---PAPSPSSFLPSPSPQPSQSPVTARTPQNFSV 463
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 37.7 bits (86), Expect = 0.027
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 27/188 (14%)
Query: 85 PMRGMSNNTPQLNRSLSQ-GTQLPSHV---------TPTTGVPTMSLHTPPSPSRGI-LP 133
P RG+ L S++Q G+ H+ +P P+ +L +P +PS+ + LP
Sbjct: 906 PNRGLGRRPSDLTISINQMGSPGMGHLKSPTLSQVHSPLVTSPSANLKSPQTPSQMVPLP 965
Query: 134 M-NPRNMMNHSQV-GQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSM 191
NP + QV G + + S T GSP+R + +P P T
Sbjct: 966 SANPPGPLKSPQVLGSSLSVRSPT--------GSPSRLKSPSMAVPSPGWVASPKTAMPS 1017
Query: 192 SGFGMNRNQAFGMNNSLS-SNIFNGT---DGSENVTGLDLSDFPA--LADRNRREGSGNP 245
G N+ MN+S + SN+ GT G + + ++ P+ + S +P
Sbjct: 1018 PGVSQNKQPPLNMNSSTTLSNMEQGTLPPSGPRSSSSAPPANPPSGLMNPSLPFTSSPDP 1077
Query: 246 TPLINPLA 253
TP NPL+
Sbjct: 1078 TPSQNPLS 1085
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 36.6 bits (83), Expect = 0.060
Identities = 40/156 (25%), Positives = 58/156 (37%), Gaps = 5/156 (3%)
Query: 42 MYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLS 101
M Q + P ++ + + Q+ G + + A G M + P S
Sbjct: 352 MVVQQPPVQPQVQQQQTAVQTAQAAQMVAPGVQMITEALAQG-GMHIRARFPPTTAVSAI 410
Query: 102 QGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPS-RTNSMSS 160
+ +P P V SL SPS G P++M Q G PS + NS S
Sbjct: 411 PSSSIPLGRQPMAQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVS 470
Query: 161 SGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGM 196
SG P S S + P QPS+ P T + F +
Sbjct: 471 SG---PAPSPSSFLPSPSPQPSQSPVTARTPQNFSV 503
>gi|7661968 epsin 4 [Homo sapiens]
Length = 625
Score = 36.2 bits (82), Expect = 0.078
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 78 QQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTT-----GVPTMSLHTPPSPSRGIL 132
QQ + PM M+ + +N S S LP V P T G MS+ + + G+
Sbjct: 508 QQQNMQQPMNVMTQSFGAVNLS-SPSNMLP--VRPQTNALIGGPMPMSMPNVMTGTMGMA 564
Query: 133 PMNPRNMMNHSQVGQGIGIPSRTNSM---SSSGLGSPNRSSPSIICMPKQ 179
P+ MMN S +G + I M + G+G PN + S PKQ
Sbjct: 565 PLGNTPMMNQSMMGMNMNIGMSAAGMGLTGTMGMGMPNIAMTSGTVQPKQ 614
>gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens]
Length = 1446
Score = 36.2 bits (82), Expect = 0.078
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 87 RGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVG 146
+G+ P L PS V P+ G SPS+G L + + SQ
Sbjct: 628 KGVEQEVPSTAPGLGMDQGSPSQVNPSQG----------SPSQGSLRQESTSQASPSQRS 677
Query: 147 QGIGIPSRTN------SMSSSGLGSPNRSSPS 172
G PS+ N S ++S GSP++ SPS
Sbjct: 678 TSQGSPSQVNPSQRSTSHANSSQGSPSQGSPS 709
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 35.8 bits (81), Expect = 0.10
Identities = 51/204 (25%), Positives = 79/204 (38%), Gaps = 58/204 (28%)
Query: 41 NMYYSQSSMFPHRSEKDMLASPSTSGQ-LSQFGASLYGQQSALGLPMRGMSNNTPQLNRS 99
N+ +S +SM P R+ M+ S +T+ SQ G S QQ AL
Sbjct: 939 NLTHSMASMPPQRTSNVMITSNTTAPNWASQEGTSK--QQEAL----------------- 979
Query: 100 LSQGTQLPSHVTPTTGVPTMSLH-------------TPPSPSRGILPMNPRNMMNHSQVG 146
S G + P+ TP P SL PP+ + M P N M+ + G
Sbjct: 980 TSAGVRFPTG-TPAAYTPNQSLQQAVGSQQFSQRAVAPPNQLTPAVQMRPMNQMSQTLNG 1038
Query: 147 QGI----GIPSRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAF 202
Q + G+ R N +S+ L + N+S + + S G+N+ +
Sbjct: 1039 QTMGPLRGLNLRPNQLSTQILPNLNQSGTGL----------------NQSRTGINQPPSL 1082
Query: 203 GMNN----SLSSNIFNGTDGSENV 222
+N + SS F GTD S ++
Sbjct: 1083 TPSNFPSPNQSSRAFQGTDHSSDL 1106
>gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens]
Length = 1693
Score = 35.8 bits (81), Expect = 0.10
Identities = 42/166 (25%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 35 SDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTP 94
S ++D ++ Y Q PHR K+ SP A + Q+ + P G+ N
Sbjct: 1273 SGFNDNSVKYQQRKHDPHRKFKEECKSPK---------AECWSQKMSNKQPNSGIENFLA 1323
Query: 95 QLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRG------ILPMNPRNMMNHSQVGQG 148
LN S Q H P P+ +P S + G IL ++ N ++H +
Sbjct: 1324 SLNISKENEVQSSHHGEP----PSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQ 1379
Query: 149 IG--IPSRTNSMSSSGLGS-PNRSSPSIICMPKQQPSRQPFTVNSM 191
I IP +N GL S P ++ M K + + V SM
Sbjct: 1380 IANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSM 1425
>gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens]
Length = 1706
Score = 35.8 bits (81), Expect = 0.10
Identities = 42/166 (25%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 35 SDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTP 94
S ++D ++ Y Q PHR K+ SP A + Q+ + P G+ N
Sbjct: 1273 SGFNDNSVKYQQRKHDPHRKFKEECKSPK---------AECWSQKMSNKQPNSGIENFLA 1323
Query: 95 QLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRG------ILPMNPRNMMNHSQVGQG 148
LN S Q H P P+ +P S + G IL ++ N ++H +
Sbjct: 1324 SLNISKENEVQSSHHGEP----PSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQ 1379
Query: 149 IG--IPSRTNSMSSSGLGS-PNRSSPSIICMPKQQPSRQPFTVNSM 191
I IP +N GL S P ++ M K + + V SM
Sbjct: 1380 IANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSM 1425
>gi|239757105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 35.4 bits (80), Expect = 0.13
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 28/149 (18%)
Query: 109 HVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQ--GIGIPS-------RTNSMS 159
H P + T + + PSP LP ++ +VG G+ PS S+S
Sbjct: 11 HTFPPCAIGTGNAKSEPSPGSAHLP-TLHHVHQKCKVGDLSGLCTPSGLALSALEMQSLS 69
Query: 160 SSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNI------- 212
SGL +P+R +P C P+ Q R P T+++ R + G N+ S +
Sbjct: 70 LSGLCTPSRPAP---CAPEMQSPRPPRTLHTF------RPGSVGTGNAKSEPLRALHTFR 120
Query: 213 --FNGTDGSENVTGLDLSDFPALADRNRR 239
T +++ T D + PA R+R+
Sbjct: 121 PCTMSTGNAKSETSPDSAHLPARLRRHRK 149
>gi|239751611 PREDICTED: hypothetical protein XP_002347929 [Homo
sapiens]
Length = 152
Score = 35.4 bits (80), Expect = 0.13
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 28/149 (18%)
Query: 109 HVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQ--GIGIPS-------RTNSMS 159
H P + T + + PSP LP ++ +VG G+ PS S+S
Sbjct: 11 HTFPPCAIGTGNAKSEPSPGSAHLP-TLHHVHQKCKVGDLSGLCTPSGLALSALEMQSLS 69
Query: 160 SSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNI------- 212
SGL +P+R +P C P+ Q R P T+++ R + G N+ S +
Sbjct: 70 LSGLCTPSRPAP---CAPEMQSPRPPRTLHTF------RPGSVGTGNAKSEPLRALHTFR 120
Query: 213 --FNGTDGSENVTGLDLSDFPALADRNRR 239
T +++ T D + PA R+R+
Sbjct: 121 PCTMSTGNAKSETSPDSAHLPARLRRHRK 149
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 35.4 bits (80), Expect = 0.13
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 85 PMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSP---------SRGILPMN 135
PM ++ T Q + S S T S ++ ++ +P S PPS S P++
Sbjct: 2063 PMTVTTSGTSQTHSSFSTATASSSFISSSSWLPQNSSSRPPSSPITTQLPHLSSATTPVS 2122
Query: 136 PRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSI 173
N ++ S PS +S S SP SSPS+
Sbjct: 2123 TTNQLS-SSFSPSPSAPSTVSSYVPSSHSSPQTSSPSV 2159
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 35.0 bits (79), Expect = 0.17
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 22/116 (18%)
Query: 82 LGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILP-MNPRNMM 140
L +GM +NTP Q LP+ G+P + L SPS LP P N
Sbjct: 3093 LAAQQQGMFDNTPL------QALNLPTAYPALQGIPPVLLPGLNSPS---LPGFTPSNTA 3143
Query: 141 NHSQVGQGIGIPSRT------------NSMSSSGLGSPNRSSPSIICMPKQQPSRQ 184
S +G+PS T N SS+ L SP + ++ P+Q P +Q
Sbjct: 3144 LTSPKPNLMGLPSTTVPSPGLPTSGLPNKPSSASLSSPTPAQATMAMGPQQPPQQQ 3199
>gi|183396804 Regulation of nuclear pre-mRNA domain containing 2
[Homo sapiens]
Length = 1461
Score = 35.0 bits (79), Expect = 0.17
Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 54/273 (19%)
Query: 79 QSALGLPM-----RGMSNNTPQLNRSLS--QGTQLPSHVTPTTGVPTMSLHTPPSPSRGI 131
QS G P+ S + N ++S +G LPS P +P ++P S + +
Sbjct: 544 QSVTGNPVPASEAASQSTSASPANTTVSTIKGRNLPSSAQPF--IPKSFNYSPNSSTSEV 601
Query: 132 LPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSM 191
+ + + +GQ G+PS T + S+ LG + S P + T+
Sbjct: 602 SSTSA----SKASIGQSPGLPSTTFKLPSNSLGFTATHNTSPAAPPTE------VTICQS 651
Query: 192 SGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINP 251
S + ++ + SL I N G+ +GL+L+ P+++
Sbjct: 652 SEVSKPKLESESTSPSLEMKIHNFLKGNPGFSGLNLN-----------------IPILSS 694
Query: 252 LAGRAPYVGMVTKPANEQSQDFSIHNEDFPALP------GSSYKD-----PTSSNDDSKS 300
L AP + P++ Q S ++ P G+ +D PTSS+ D+ S
Sbjct: 695 LGSSAP---SESHPSDFQRGPTSTSIDNIDGTPVRDERSGTPTQDEMMDKPTSSSVDTMS 751
Query: 301 NL----NTSGKTTSSTDGPKFPGDKSSTTQNNN 329
L + T SST P D+S + +N
Sbjct: 752 LLSKIISPGSSTPSSTRSPPPGRDESYPRELSN 784
>gi|7019381 fibronectin leucine rich transmembrane protein 2 [Homo
sapiens]
Length = 660
Score = 35.0 bits (79), Expect = 0.17
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 72 GASLYGQQSALGLPMRGMSNNT---PQLNRSLSQGTQLPSHVTPTTGVPTMSL------H 122
G G + G+ +R ++ N P L T PS +PTT PT+S+ +
Sbjct: 336 GFMCQGPEQVRGMAVRELNMNLLSCPTTTPGLPLFTPAPSTASPTTQPPTLSIPNPSRSY 395
Query: 123 TPPSPSRGILPMNP 136
TPP+P+ LP P
Sbjct: 396 TPPTPTTSKLPTIP 409
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 34.7 bits (78), Expect = 0.23
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 6/120 (5%)
Query: 60 ASPSTSGQLSQFGASLYGQQSALGLPMRGM---SNNTPQLNRSLSQGTQLPSHVTPTTGV 116
A+P+ SG ++ L G S LG+ + S T Q R ++ S +G
Sbjct: 2073 ATPTASGDRTEISGDLSGHTSQLGVVISTSIPESEWTQQTQRPAETHLEIESSSLLYSGE 2132
Query: 117 PTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICM 176
T ++ T SP+ +P +P P+R+ + G G+ + +IC+
Sbjct: 2133 ETHTVETATSPTDASIPASPEWKRESESTA---AAPARSCAEEPCGAGTCKETEGHVICL 2189
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 34.3 bits (77), Expect = 0.30
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 6/157 (3%)
Query: 93 TPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIP 152
TP+++ L+ T P +TG ++ HT P S +P + + + Q +G+
Sbjct: 27 TPEMDSGLTGATLSPK---TSTGAIVVTEHTLPFTSPDKTLASPTSSVV-GRTTQSLGVM 82
Query: 153 SRT--NSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSS 210
S S S S R+SPS+ PSR + +SG R + + +
Sbjct: 83 SSALPESTSRGMTHSEQRTSPSLSPQVNGTPSRNYPATSMVSGLSSPRTRTSSTEGNFTK 142
Query: 211 NIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTP 247
T E +G + + + EG TP
Sbjct: 143 EASTYTLTVETTSGPVTEKYTVPTETSTTEGDSTETP 179
Score = 32.3 bits (72), Expect = 1.1
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 15/169 (8%)
Query: 157 SMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGT 216
S SS L SP +S S + S P V ++ G + M + S +
Sbjct: 8559 SSVSSSLSSPAMTSTSFFSTLPESISSSPHPVTALLTLGPVKTT--DMLRTSSEPETSSP 8616
Query: 217 DGSENVTGLDLSDFPALADRNRREGSGNPTPLINP-------LAGRAPYVGMVT-KPANE 268
+ + L+ DR + S N TP++N L+ + +VT KP +
Sbjct: 8617 PNLSSTSAEILATSEVTKDREKIHPSSN-TPVVNVGTVIYKHLSPSSVLADLVTTKPTSP 8675
Query: 269 QSQDFSIHNEDF----PALPGSSYKDPTSSNDDSKSNLNTSGKTTSSTD 313
+ ++ N PA P + PTSS ++TS +T+S+T+
Sbjct: 8676 MATTSTLGNTSVSTSTPAFPETMMTQPTSSLTSGLREISTSQETSSATE 8724
>gi|134152725 receptor tyrosine kinase-like orphan receptor 1
isoform 1 [Homo sapiens]
Length = 937
Score = 34.3 bits (77), Expect = 0.30
Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 11/159 (6%)
Query: 203 GMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMV 262
G+++ SS +G + + T L S L++ R P+ I P A ++G
Sbjct: 751 GLSSHTSSTTPSGGNATTQTTSLSASPVSNLSNP-RYPNYMFPSQGITPQGQIAGFIG-- 807
Query: 263 TKPANEQSQDFSIHNEDFPALPG-----SSYKDPTSSNDDSKSNLNTSGKTTSSTDGPKF 317
P Q+Q F I +P PG +++ PT + ++ SS G
Sbjct: 808 --PPIPQNQRF-IPINGYPIPPGYAAFPAAHYQPTGPPRVIQHCPPPKSRSPSSASGSTS 864
Query: 318 PGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFG 356
G +S + + Q+ I +LP + N P GM FG
Sbjct: 865 TGHVTSLPSSGSNQEANIPLLPHMSIPNHPGGMGITVFG 903
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 34.3 bits (77), Expect = 0.30
Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 12/175 (6%)
Query: 155 TNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFN 214
++S SS + SS S S + + + N + +NS SS+ N
Sbjct: 602 SDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSN 661
Query: 215 GTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFS 274
++ S++ D SD + +D + S + + N + +++ S
Sbjct: 662 SSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSN------------SSESSDSSDSSD 709
Query: 275 IHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSSTDGPKFPGDKSSTTQNNN 329
+ D S+ D SSN S+ + S ++ S+D S+ +N+
Sbjct: 710 SDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNS 764
Score = 33.5 bits (75), Expect = 0.51
Identities = 37/188 (19%), Positives = 78/188 (41%), Gaps = 6/188 (3%)
Query: 143 SQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAF 202
S G+G S ++S SS + SS S S +S + + +
Sbjct: 540 SDSGKGKSDSSDSDSSDSSNSSDSSDSSDS-----DSSDSNSSSDSDSSDSDSSDSSDSD 594
Query: 203 GMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMV 262
++S SS+ + +D S++ D SD + + ++ + S + + + + +
Sbjct: 595 SSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNS 654
Query: 263 TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS-KSNLNTSGKTTSSTDGPKFPGDK 321
+ S + S ++ + SS D ++S+D S S+ + S +++ S+D
Sbjct: 655 DSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSD 714
Query: 322 SSTTQNNN 329
SS + N+N
Sbjct: 715 SSDSSNSN 722
Score = 33.5 bits (75), Expect = 0.51
Identities = 54/287 (18%), Positives = 104/287 (36%), Gaps = 21/287 (7%)
Query: 45 SQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGT 104
S SS S+ ++ S S S S S+ SN++ + S S +
Sbjct: 735 SDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDS 794
Query: 105 QLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLG 164
S+ + ++ S + S S + N + S ++S S
Sbjct: 795 SDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSD 854
Query: 165 SPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTG 224
S NRS S + +S S + N++ ++S S+ + +D S++
Sbjct: 855 SSNRSDSS---NSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNS 911
Query: 225 LDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALP 284
D SD +D + S + + + S D S ++ +
Sbjct: 912 SDSSDSSNSSDSSESSNSSDNS----------------NSSDSSNSSDSSDSSDSSNSSD 955
Query: 285 GSSYKDPTSSNDDSKSNLNTSGKTTSSTDG--PKFPGDKSSTTQNNN 329
S+ D ++S+D S SN + S +++S+D D S ++ ++N
Sbjct: 956 SSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSN 1002
Score = 32.0 bits (71), Expect = 1.5
Identities = 36/182 (19%), Positives = 74/182 (40%), Gaps = 3/182 (1%)
Query: 153 SRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSM--SGFGMNRNQAFGMNNSLSS 210
S +NS SS + + SS S S + +S S + N + N+S SS
Sbjct: 969 SDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSS 1028
Query: 211 NIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQS 270
N + +D S++ D SD +D + S + + + + + + S
Sbjct: 1029 NSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSD-SSDSSDSSDSSDSSDSSESSDS 1087
Query: 271 QDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSSTDGPKFPGDKSSTTQNNNQ 330
D S ++ + S D + S+D S S+ +++ +S + D S+++ +++
Sbjct: 1088 SDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDS 1147
Query: 331 QK 332
+
Sbjct: 1148 SE 1149
Score = 29.3 bits (64), Expect = 9.6
Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 16/175 (9%)
Query: 155 TNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFN 214
+NS SS + SS S S + +S S + + + ++S SS+ N
Sbjct: 1121 SNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDS-SDSSDSSDSSDSSDSSDSSDSSN 1179
Query: 215 GTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFS 274
+D S++ D SD +D + S + + + + S D S
Sbjct: 1180 SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSS----------DSSDSSDSSDSS 1229
Query: 275 IHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSSTDGPKFPGDKSSTTQNNN 329
NE + S D ++S+D S S+ ++S T+ S D D S + N N
Sbjct: 1230 DSNESSDSSDSSDSSDSSNSSDSSDSS-DSSDSTSDSND----ESDSQSKSGNGN 1279
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 34.3 bits (77), Expect = 0.30
Identities = 42/174 (24%), Positives = 61/174 (35%), Gaps = 22/174 (12%)
Query: 174 ICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPAL 233
+C P PF +M + + G + +L SN + N G S P +
Sbjct: 96 LCHPMNHNGLLPFHPQNMDLPEITVSNMLGQDGTLLSNSISVMPDIRNPEGTQYSSHPQM 155
Query: 234 ADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSI--------HNEDFPALPG 285
A R G P I G P+ + T ++ S + HN P+ PG
Sbjct: 156 AAMRPR---GQPAD-IRQQPGMMPHGQLTTINQSQLSAQLGLNMGGSNVPHNS--PSPPG 209
Query: 286 SSYKDPTSSND------DSKSNLNTSGKTTSSTDG--PKFPGDKSSTTQNNNQQ 331
S P+ S+ D S +N K +S G PK P K N Q+
Sbjct: 210 SKSATPSPSSSVHEDEGDDTSKINGGEKRPASDMGKKPKTPKKKKKKDPNEPQK 263
>gi|56788377 nucleoporin like 1 isoform b [Homo sapiens]
Length = 587
Score = 33.9 bits (76), Expect = 0.39
Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 16/169 (9%)
Query: 63 STSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLH 122
+TS S FG L+G + A G + G + TP + + G L + P +L
Sbjct: 55 TTSAPSSGFGTGLFGSKPATGFTLGGTNTGTPATTSAATTGFSLGFN-KPAASATPFALP 113
Query: 123 TPPSPSRGILPMNPRNMMNHSQVG---QGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQ 179
+ + G+ + + G +G + T + +S+GL +
Sbjct: 114 ITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGG-------ALAGL 166
Query: 180 QPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLS 228
S T SG G N A G+ +L + T G+E + G+D S
Sbjct: 167 GGSLFQSTNTGTSGLGQN---ALGL--TLGTTAATSTAGNEGLGGIDFS 210
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 33.9 bits (76), Expect = 0.39
Identities = 80/364 (21%), Positives = 130/364 (35%), Gaps = 43/364 (11%)
Query: 56 KDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQ-LNRSLSQGTQLPSHVTPTT 114
+++ A+ S + QL Q L QQ +N PQ ++ SQ Q P TP
Sbjct: 167 QNLQATSSLNSQLQQLQLQLQQQQQQQQQQPPPSTNQHPQPAPQAPSQSQQQPLQPTPPQ 226
Query: 115 G---------VPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGS 165
PT L P P + + +N S Q P + + GL S
Sbjct: 227 QPPPASQQPPAPTSQLQQAPQPQQHQPHSHSQNQNQPSPTQQSSSPPQKPSQSPGHGLPS 286
Query: 166 PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGS--ENVT 223
P + + S+ +MS +QAFG N+LSS G G N
Sbjct: 287 PLTPPNPLQLVNNPLASQAAAAAAAMSSIA--SSQAFG--NALSS--LQGVTGQLVTNAQ 340
Query: 224 GLDLSDFPALAD--RNRREGSGNPTPLINPLAGR----------APYVGMVTKPA-NEQS 270
G + P + + + + SG + P+ + A +G P N Q
Sbjct: 341 GQIIGTIPLMPNPGPSSQAASGTQGLQVQPITPQLLTNAQGQIIATVIGNQILPVINTQG 400
Query: 271 QDFSIHNEDFPALPGSSYKDPT-SSNDDSKSNLNTSGKTTSSTDGPKFPGDKSSTTQNNN 329
S P PG P+ +S + S N S + P ++S++ +++
Sbjct: 401 ITLS------PIKPGQQLHQPSQTSVGQAASQGNLLHLAHSQASMSQSPVRQASSSSSSS 454
Query: 330 QQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNL 389
+ V G++ + PQ + G+ L IR + L+LG T +G L
Sbjct: 455 SSSSALSV---GQLVSNPQTAAGEVDGV--NLEEIREFAKAFKIRRLSLGLTQTQVGQAL 509
Query: 390 NSPE 393
++ E
Sbjct: 510 SATE 513
>gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens]
Length = 1424
Score = 33.5 bits (75), Expect = 0.51
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 26/155 (16%)
Query: 57 DMLASPSTSGQLSQFGASLYGQQ------SALGLPM-RGMSNNTPQLNRSLSQGTQLPSH 109
D+ +S + +S G+ L +Q ++LGL + + + P NR++S L S
Sbjct: 806 DLTSSDFYNNSISSNGSHLGTKQQVFQGTNSLGLKSSQSVQSIRPPYNRAVS----LDSP 861
Query: 110 VTPTTGVPTMSLHT-PPSPSRGILPMNPRNMMNHSQVGQGIGIPSR----TNSMSSSGLG 164
V+ + P ++ P P + +L NPR M + G +G P+R T + SS G
Sbjct: 862 VSVGSSPPVKNISAFPMLPKQPMLGGNPRMMDSQENYGSSMGGPNRNVTVTQTPSSGDWG 921
Query: 165 SPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRN 199
PN + + +P NSM G + N
Sbjct: 922 LPNSKAGRM----------EPMNSNSMGRPGGDYN 946
Score = 33.1 bits (74), Expect = 0.66
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 17/207 (8%)
Query: 11 EKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQ 70
E+ Y+ + G + + G +S +M +Q P S LA PST+GQ+S
Sbjct: 372 EQNGYRPNPNPVGQGIRPPMAGCNSSVGGMSMSPNQGLQMPS-SRAYGLADPSTTGQMS- 429
Query: 71 FGASLYGQQSALGL-PMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSR 129
GA G + L P GM + + N + P H +P +P++
Sbjct: 430 -GARYGGSSNIASLTPGPGMQSPSSYQNNNYGLNMSSPPHGSPGL-----------APNQ 477
Query: 130 GILPMNPRNMMNHSQVGQGIGIPSRTNS-MSSSG-LGSPNRSSPSIICMPKQQPSRQPFT 187
+ ++PRN + + +S M+SSG G+ + SS S+ +
Sbjct: 478 QNIMISPRNRGSPKIASHQFSPVAGVHSPMASSGNTGNHSFSSSSLSALQAISEGVGTSL 537
Query: 188 VNSMSGFGMNRNQAFGMNNSLSSNIFN 214
++++S G + + MN + S + N
Sbjct: 538 LSTLSSPGPKLDNSPNMNITQPSKVSN 564
>gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens]
Length = 1420
Score = 33.5 bits (75), Expect = 0.51
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 26/155 (16%)
Query: 57 DMLASPSTSGQLSQFGASLYGQQ------SALGLPM-RGMSNNTPQLNRSLSQGTQLPSH 109
D+ +S + +S G+ L +Q ++LGL + + + P NR++S L S
Sbjct: 806 DLTSSDFYNNSISSNGSHLGTKQQVFQGTNSLGLKSSQSVQSIRPPYNRAVS----LDSP 861
Query: 110 VTPTTGVPTMSLHT-PPSPSRGILPMNPRNMMNHSQVGQGIGIPSR----TNSMSSSGLG 164
V+ + P ++ P P + +L NPR M + G +G P+R T + SS G
Sbjct: 862 VSVGSSPPVKNISAFPMLPKQPMLGGNPRMMDSQENYGSSMGGPNRNVTVTQTPSSGDWG 921
Query: 165 SPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRN 199
PN + + +P NSM G + N
Sbjct: 922 LPNSKAGRM----------EPMNSNSMGRPGGDYN 946
Score = 33.1 bits (74), Expect = 0.66
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 17/207 (8%)
Query: 11 EKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQ 70
E+ Y+ + G + + G +S +M +Q P S LA PST+GQ+S
Sbjct: 372 EQNGYRPNPNPVGQGIRPPMAGCNSSVGGMSMSPNQGLQMPS-SRAYGLADPSTTGQMS- 429
Query: 71 FGASLYGQQSALGL-PMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSR 129
GA G + L P GM + + N + P H +P +P++
Sbjct: 430 -GARYGGSSNIASLTPGPGMQSPSSYQNNNYGLNMSSPPHGSPGL-----------APNQ 477
Query: 130 GILPMNPRNMMNHSQVGQGIGIPSRTNS-MSSSG-LGSPNRSSPSIICMPKQQPSRQPFT 187
+ ++PRN + + +S M+SSG G+ + SS S+ +
Sbjct: 478 QNIMISPRNRGSPKIASHQFSPVAGVHSPMASSGNTGNHSFSSSSLSALQAISEGVGTSL 537
Query: 188 VNSMSGFGMNRNQAFGMNNSLSSNIFN 214
++++S G + + MN + S + N
Sbjct: 538 LSTLSSPGPKLDNSPNMNITQPSKVSN 564
>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
Length = 726
Score = 33.5 bits (75), Expect = 0.51
Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 7/145 (4%)
Query: 40 ENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRS 99
E ++ + + P + + +P G+ GA G Q + + + +
Sbjct: 130 EKIFLQKVAQMPQEEVELLPPAPKGKGRKPAAGAQSAGTQQVAAVSSVSPATPFQSVPPT 189
Query: 100 LSQ-----GTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSR 154
+SQ T +P+ T VP PP P+ I+P+ P + +G+ +
Sbjct: 190 VSQTPVIAATPVPTITANVTSVPVPPAAAPPPPATPIVPVVPPTPPVVKK--KGVKRKAD 247
Query: 155 TNSMSSSGLGSPNRSSPSIICMPKQ 179
T + ++S + + SP + PKQ
Sbjct: 248 TTTPTTSAITASRSESPPPLSDPKQ 272
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.5 bits (75), Expect = 0.51
Identities = 62/278 (22%), Positives = 106/278 (38%), Gaps = 39/278 (14%)
Query: 51 PHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHV 110
P +S +PS S ++ Q S LP +P + Q L +
Sbjct: 2414 PSQSRMTSERAPSPSSRMGQ-------APSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQT 2466
Query: 111 TPTTGVPTMS---LHTPPSPS---RGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLG 164
TP G ++S + T S + G+L + P + HS VG+ P+ T + S L
Sbjct: 2467 TPVAGSQSLSSGAVATTTSSAGDHNGMLSV-PAPGVPHSDVGEP---PASTGAQQPSALA 2522
Query: 165 SPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTG 224
+ QP+++ + +S S + + + ++S SS+ + +D G
Sbjct: 2523 A-------------LQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSE----G 2565
Query: 225 LDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALP 284
L P +A +R S P P GR P + S S + +
Sbjct: 2566 SSLPVQPEVA--LKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSS 2623
Query: 285 GSSYKDPTSSNDDSKSNLNTSGKTTSSTDGPKFPGDKS 322
SS +SS+ S S +S ++SS+ P PG ++
Sbjct: 2624 SSSSSSSSSSSSSSSS---SSSSSSSSSPSPAKPGPQA 2658
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,905,688
Number of Sequences: 37866
Number of extensions: 1152953
Number of successful extensions: 3333
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 3181
Number of HSP's gapped (non-prelim): 247
length of query: 540
length of database: 18,247,518
effective HSP length: 107
effective length of query: 433
effective length of database: 14,195,856
effective search space: 6146805648
effective search space used: 6146805648
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.