Guide to the Human Genome
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Name: BRD3 Sequence: fasta or formatted (726aa) NCBI GI: 11067749
Description:

bromodomain containing protein 3

Referenced in:

Bromodomain Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         71           3
 C cysteine            0.7          5           1
 D aspartate           4.5         33           2
 E glutamate           8.1         59           5
 F phenylalanine       1.8         13           1
 G glycine             4.3         31           2
 H histidine           1.7         12           1
 I isoleucine          2.9         21           2
 K lysine             12.0         87           4
 L leucine             5.9         43           2
 M methionine          2.3         17           1
 N asparagine          2.5         18           2
 P proline            10.5         76           4
 Q glutamine           5.0         36           2
 R arginine            4.1         30           2
 S serine             10.2         74           6
 T threonine           4.7         34           3
 V valine              6.2         45           3
 W tryptophan          0.6          4           1
 Y tyrosine            2.3         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bromodomain containing protein 3 
BRD2                  0.591   bromodomain containing 2 
BRD2                  0.591   bromodomain containing 2 
BRD4                  0.512   bromodomain-containing protein 4 isoform short 
BRD4                  0.512   bromodomain-containing protein 4 isoform long 
BRDT                  0.438   testis-specific bromodomain protein 
BRDT                  0.438   testis-specific bromodomain protein 
CREBBP                0.047   CREB binding protein isoform b 
CREBBP                0.047   CREB binding protein isoform a 
EP300                 0.047   E1A binding protein p300 
KAT2B                 0.041   K(lysine) acetyltransferase 2B 
NEFH                  0.039   neurofilament, heavy polypeptide 200kDa 
BPTF                  0.037   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.037   bromodomain PHD finger transcription factor isoform ...
NOLC1                 0.036   nucleolar and coiled-body phosphoprotein 1 
BAZ2B                 0.035   bromodomain adjacent to zinc finger domain, 2B [Homo...
BAZ2A                 0.033   bromodomain adjacent to zinc finger domain, 2A [Homo...
CECR2                 0.032   cat eye syndrome chromosome region, candidate 2 [Ho...
TAF1L                 0.032   TBP-associated factor RNA polymerase 1-like 
BRD8                  0.032   bromodomain containing 8 isoform 2 
BRD8                  0.032   bromodomain containing 8 isoform 1 
TAF1                  0.032   TBP-associated factor 1 isoform 2 
TAF1                  0.032   TBP-associated factor 1 isoform 1 
TRIM24                0.032   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.032   transcriptional intermediary factor 1 alpha isoform ...
THOC2                 0.031   THO complex 2 
BAZ1B                 0.031   bromodomain adjacent to zinc finger domain, 1B [Homo...
TRDN                  0.030   triadin 
BRPF1                 0.030   bromodomain and PHD finger-containing protein 1 isof...
BRPF1                 0.030   bromodomain and PHD finger-containing protein 1 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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