Guide to the Human Genome
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Name: LOC100290201 Sequence: fasta or formatted (152aa) NCBI GI: 239751611
Description:

PREDICTED: hypothetical protein XP_002347929

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         13           1
 C cysteine            4.6          7           1
 D aspartate           1.3          2           1
 E glutamate           3.3          5           1
 F phenylalanine       2.0          3           1
 G glycine             7.2         11           1
 H histidine           5.9          9           2
 I isoleucine          0.7          1           1
 K lysine              4.6          7           1
 L leucine            11.8         18           1
 M methionine          2.6          4           1
 N asparagine          2.0          3           1
 P proline            12.5         19           2
 Q glutamine           2.6          4           1
 R arginine            7.2         11           2
 S serine             12.5         19           1
 T threonine           7.9         12           1
 V valine              2.6          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347929 
LOC100292631          1.000   PREDICTED: hypothetical protein 
NKX1-1                0.041   PREDICTED: NK1 homeobox 1 
NKX1-1                0.041   PREDICTED: HPX-153 homeobox 
CNOT2                 0.034   CCR4-NOT transcription complex, subunit 2 
ANKHD1                0.031   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.031   ANKHD1-EIF4EBP3 protein 
HCN4                  0.027   hyperpolarization activated cyclic nucleotide-gated p...
LOC100293654          0.027   PREDICTED: hypothetical protein 
LOC100290979          0.027   PREDICTED: hypothetical protein XP_002347837 
LOC100288912          0.027   PREDICTED: hypothetical protein XP_002343614 
LOC100292519          0.024   PREDICTED: hypothetical protein 
LOC100133331          0.024   PREDICTED: hypothetical protein 
LRRC47                0.024   leucine rich repeat containing 47 
LOC100290226          0.024   PREDICTED: hypothetical protein XP_002347217 
LOC100288718          0.024   PREDICTED: hypothetical protein XP_002343085 
TERF2                 0.024   telomeric repeat binding factor 2 
LOC100293005          0.020   PREDICTED: hypothetical protein 
LOC100289780          0.020   PREDICTED: hypothetical protein XP_002347375 
LOC100130506          0.020   PREDICTED: hypothetical protein 
LOC100288911          0.020   PREDICTED: hypothetical protein XP_002342241 
WIPF3                 0.020   WAS/WASL interacting protein family, member 3 [Homo...
FAM108A4              0.020   PREDICTED: hypothetical protein 
USP31                 0.020   ubiquitin specific peptidase 31 
BCL9                  0.017   B-cell CLL/lymphoma 9 
CTTNBP2               0.017   cortactin binding protein 2 
NCOR1                 0.017   nuclear receptor co-repressor 1 
LOC100287541          0.017   PREDICTED: hypothetical protein XP_002344230 
MN1                   0.017   meningioma  1 
SGIP1                 0.017   SH3-domain GRB2-like (endophilin) interacting prote...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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