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Search of human proteins with 7657315
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657315 Lsm3 protein [Homo sapiens]
(102 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657315 Lsm3 protein [Homo sapiens] 204 1e-53
gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo ... 47 4e-06
gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo sa... 47 4e-06
gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform... 45 1e-05
gi|17471847 PREDICTED: hypothetical protein LOC119358 [Homo sapi... 36 0.006
gi|169201734 PREDICTED: similar to hCG2040270 [Homo sapiens] 35 0.013
gi|89033538 PREDICTED: similar to hCG2040270 [Homo sapiens] 35 0.013
gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo ... 35 0.017
gi|213385305 LSM5 homolog, U6 small nuclear RNA associated isofo... 34 0.022
gi|195222722 LSM5 homolog, U6 small nuclear RNA associated isofo... 34 0.022
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 33 0.048
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 33 0.048
gi|150417973 supervillin isoform 2 [Homo sapiens] 33 0.063
gi|150417971 supervillin isoform 1 [Homo sapiens] 33 0.063
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 32 0.082
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 32 0.082
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 32 0.082
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 32 0.082
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 32 0.082
gi|226442852 small nuclear ribonucleoprotein G-like protein [Hom... 32 0.11
gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like p... 32 0.11
gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like p... 32 0.11
gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo s... 29 0.70
gi|5901998 Sm protein F [Homo sapiens] 29 0.70
gi|21735569 claspin [Homo sapiens] 29 0.91
gi|22748757 truncated type I keratin KA21 [Homo sapiens] 28 1.2
gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens] 27 2.7
gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens] 27 2.7
gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo ... 27 2.7
gi|66472382 nischarin [Homo sapiens] 27 2.7
>gi|7657315 Lsm3 protein [Homo sapiens]
Length = 102
Score = 204 bits (519), Expect = 1e-53
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
Sbjct: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
Query: 61 VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
Sbjct: 61 VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo
sapiens]
Length = 108
Score = 46.6 bits (109), Expect = 4e-06
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + + ++
Sbjct: 18 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 77
Query: 75 YKSTK-RNIPMLFVRGDGVVLV 95
K R I +F+RGD V++V
Sbjct: 78 KPVNKDRYISKMFLRGDSVIVV 99
>gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo
sapiens]
Length = 118
Score = 46.6 bits (109), Expect = 4e-06
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 75 YKSTK-RNIPMLFVRGDGVVLV 95
K R I +F+RGD V++V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform
a [Homo sapiens]
Length = 91
Score = 45.1 bits (105), Expect = 1e-05
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYK 76
PL+L+ + RI++ M++D+E+ G L +D +NM+L DV E T E T +
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQIL 73
Query: 77 STKRNIPMLFVRGDG 91
NI ML G+G
Sbjct: 74 LNGNNITMLVPGGEG 88
>gi|17471847 PREDICTED: hypothetical protein LOC119358 [Homo
sapiens]
Length = 117
Score = 36.2 bits (82), Expect = 0.006
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
PL ++ S+ + ++ + R++ +L G + A+ +H NM+L +V+ET T + + +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENVKETWTEVPKSGKGKKSK 87
Query: 75 YKSTKRNIPMLFVRGDGVVLV 95
+ I +F+ GD V++V
Sbjct: 88 PVNKDCYISRMFLHGDLVIVV 108
>gi|169201734 PREDICTED: similar to hCG2040270 [Homo sapiens]
Length = 117
Score = 35.0 bits (79), Expect = 0.013
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 28 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFV 87
++ + R++ +L G + A+ +H NM+L +V+ET T + + + + I +F+
Sbjct: 41 QVLINCRHNTKLLGHVKAFHRHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFL 100
Query: 88 RGDGVVLV 95
GD V++V
Sbjct: 101 HGDLVIVV 108
>gi|89033538 PREDICTED: similar to hCG2040270 [Homo sapiens]
Length = 117
Score = 35.0 bits (79), Expect = 0.013
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 28 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFV 87
++ + R++ +L G + A+ +H NM+L +V+ET T + + + + I +F+
Sbjct: 41 QVLINCRHNTKLLGHVKAFHRHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFL 100
Query: 88 RGDGVVLV 95
GD V++V
Sbjct: 101 HGDLVIVV 108
>gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo
sapiens]
Length = 95
Score = 34.7 bits (78), Expect = 0.017
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVR 88
+ V+++ND + G LH+ DQ+LN+ L D+ T D E Y + ++ F+R
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT------DPEKYPHML-----SVKNCFIR 63
Query: 89 GDGVVLVAPP 98
G V V P
Sbjct: 64 GSVVRYVQLP 73
>gi|213385305 LSM5 homolog, U6 small nuclear RNA associated
isoform b [Homo sapiens]
Length = 62
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 33 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDG 91
M++D+E+ G L +D +NM+L DV E T E T + NI ML G+G
Sbjct: 1 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEG 59
>gi|195222722 LSM5 homolog, U6 small nuclear RNA associated
isoform b [Homo sapiens]
Length = 62
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 33 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDG 91
M++D+E+ G L +D +NM+L DV E T E T + NI ML G+G
Sbjct: 1 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEG 59
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 33.1 bits (74), Expect = 0.048
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
+D R+ +++ R G A+D+H+N+IL D +E +I + ++ + KR + +
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDE---FRKIKPKNSKQAEREEKRVLGL 69
Query: 85 LFVRGDGVV 93
+ +RG+ +V
Sbjct: 70 VLLRGENLV 78
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B'
isoform B [Homo sapiens]
Length = 231
Score = 33.1 bits (74), Expect = 0.048
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
+D R+ +++ R G A+D+H+N+IL D +E +I + ++ + KR + +
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDE---FRKIKPKNSKQAEREEKRVLGL 69
Query: 85 LFVRGDGVV 93
+ +RG+ +V
Sbjct: 70 VLLRGENLV 78
>gi|150417973 supervillin isoform 2 [Homo sapiens]
Length = 2214
Score = 32.7 bits (73), Expect = 0.063
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 11 TNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI------ 64
T V +PL+ I D ++ ++ DR L + + LN +G + ETV T+
Sbjct: 1243 TTPVSKPLEDIEARPDMQLESDLKLDR-----LETFLRRLNNKVGGMHETVLTVTGKSVK 1297
Query: 65 EI----DEETYEEIYKSTKRNIP 83
E+ D+ET+ + Y+S N+P
Sbjct: 1298 EVMKPDDDETFAKFYRSVDYNMP 1320
>gi|150417971 supervillin isoform 1 [Homo sapiens]
Length = 1788
Score = 32.7 bits (73), Expect = 0.063
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 11 TNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI------ 64
T V +PL+ I D ++ ++ DR L + + LN +G + ETV T+
Sbjct: 817 TTPVSKPLEDIEARPDMQLESDLKLDR-----LETFLRRLNNKVGGMHETVLTVTGKSVK 871
Query: 65 EI----DEETYEEIYKSTKRNIP 83
E+ D+ET+ + Y+S N+P
Sbjct: 872 EVMKPDDDETFAKFYRSVDYNMP 894
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.3 bits (72), Expect = 0.082
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
+D R+ +++ R G A+D+H+N+IL D +E +I + ++ + KR + +
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDE---FRKIKPKNAKQPEREEKRVLGL 69
Query: 85 LFVRGDGVV 93
+ +RG+ +V
Sbjct: 70 VLLRGENLV 78
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.3 bits (72), Expect = 0.082
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
+D R+ +++ R G A+D+H+N+IL D +E +I + ++ + KR + +
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDE---FRKIKPKNAKQPEREEKRVLGL 69
Query: 85 LFVRGDGVV 93
+ +RG+ +V
Sbjct: 70 VLLRGENLV 78
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.3 bits (72), Expect = 0.082
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
+D R+ +++ R G A+D+H+N+IL D +E +I + ++ + KR + +
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDE---FRKIKPKNAKQPEREEKRVLGL 69
Query: 85 LFVRGDGVV 93
+ +RG+ +V
Sbjct: 70 VLLRGENLV 78
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.3 bits (72), Expect = 0.082
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
+D R+ +++ R G A+D+H+N+IL D +E +I + ++ + KR + +
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDE---FRKIKPKNAKQPEREEKRVLGL 69
Query: 85 LFVRGDGVV 93
+ +RG+ +V
Sbjct: 70 VLLRGENLV 78
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.3 bits (72), Expect = 0.082
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
+D R+ +++ R G A+D+H+N+IL D +E +I + ++ + KR + +
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDE---FRKIKPKNAKQPEREEKRVLGL 69
Query: 85 LFVRGDGVV 93
+ +RG+ +V
Sbjct: 70 VLLRGENLV 78
>gi|226442852 small nuclear ribonucleoprotein G-like protein [Homo
sapiens]
Length = 74
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Query: 26 DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPML 85
D++ +K+ R ++G L +D +N+++ + E T+ ++NI M+
Sbjct: 14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS-------------GQQKNIGMV 60
Query: 86 FVRGDGVVLV 95
+RG+ ++++
Sbjct: 61 EIRGNSIIML 70
>gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Query: 26 DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPML 85
D++ +K+ R ++G L +D +N+++ + E T+ ++NI M+
Sbjct: 14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS-------------GQQKNIGMV 60
Query: 86 FVRGDGVVLV 95
+RG+ ++++
Sbjct: 61 EIRGNSIIML 70
>gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Query: 26 DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPML 85
D++ +K+ R ++G L +D +N+++ + E T+ ++NI M+
Sbjct: 14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS-------------GQQKNIGMV 60
Query: 86 FVRGDGVVLV 95
+RG+ ++++
Sbjct: 61 EIRGNSIIML 70
>gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo
sapiens]
Length = 92
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/92 (19%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 8 QQTTNTVEEPLDLIRLSLDER----IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTT 63
Q+ + +P++LI L R +++ + + + G + +D+++N++L D E
Sbjct: 8 QKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAE----- 62
Query: 64 IEIDEETYEEIYKSTKRNIPMLFVRGDGVVLV 95
EI +T +++ + + ++GD + L+
Sbjct: 63 -EIHSKT------KSRKQLGRIMLKGDNITLL 87
>gi|5901998 Sm protein F [Homo sapiens]
Length = 80
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
+ P D ++ + + VK+ + + RG L D ++N+ L E+T E +
Sbjct: 6 QTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-------------EQTEEYV 52
Query: 75 YKSTKRNIPMLFVRGDGVVLVAPPLR 100
K F+RG+ V+ ++ R
Sbjct: 53 NGQLKNKYGDAFIRGNNVLYISTQKR 78
>gi|21735569 claspin [Homo sapiens]
Length = 1339
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/77 (16%), Positives = 36/77 (46%)
Query: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
D+ + EE L+ IR ++ ++ + + L +H++++ + G +
Sbjct: 221 DENNSPLEDEESLESIRAAVKNKVKKHKKKEPSLESGVHSFEEGSELSKGTTRKERKAAR 280
Query: 66 IDEETYEEIYKSTKRNI 82
+ +E ++++ T+R I
Sbjct: 281 LSKEALKQLHSETQRLI 297
>gi|22748757 truncated type I keratin KA21 [Homo sapiens]
Length = 295
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 36 DRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNI 82
+R L LHA +QH M L D+E T IE E+ +E+ + ++ +
Sbjct: 76 ERGLENSLHASEQHYQMQLQDLE---TVIEGLEKELQEVRRGIEKQL 119
>gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 8 QQTTNTVEEPLDLIRLSLDER----IYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
Q+ + +P+ LI L R +++ + + + G + +D+++N++L D EE
Sbjct: 8 QKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEE 63
>gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 8 QQTTNTVEEPLDLIRLSLDER----IYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
Q+ + +P+ LI L R +++ + + + G + +D+++N++L D EE
Sbjct: 8 QKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEE 63
>gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo
sapiens]
Length = 92
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 8 QQTTNTVEEPLDLIRLSLDER----IYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
Q+ + +P+ LI L R +++ + + + G + +D+++N++L D EE
Sbjct: 8 QKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEE 63
>gi|66472382 nischarin [Homo sapiens]
Length = 1504
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 44 HAYDQHLNMILGDVEETVTTIEIDEETYEEIYKST 78
H + QHL ++L +E T + +D++ Y E T
Sbjct: 1266 HCFLQHLMVVLSSLERTPSPEPVDKDFYSEFGNKT 1300
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,465,337
Number of Sequences: 37866
Number of extensions: 123371
Number of successful extensions: 429
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 43
length of query: 102
length of database: 18,247,518
effective HSP length: 73
effective length of query: 29
effective length of database: 15,483,300
effective search space: 449015700
effective search space used: 449015700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.