Guide to the Human Genome
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Name: MID1 Sequence: fasta or formatted (667aa) NCBI GI: 4557753
Description:

midline 1

Referenced in:

Fibronectin Family
Serine / Threonine Protein Phosphatases
Tripartite Motif Family

Other entries for this name:
alt mRNA [667aa] midline 1
alt mRNA [667aa] midline 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         44           2
 C cysteine            4.5         30           1
 D aspartate           5.1         34           2
 E glutamate           6.9         46           2
 F phenylalanine       3.1         21           1
 G glycine             3.4         23           1
 H histidine           3.7         25           1
 I isoleucine          6.4         43           2
 K lysine              5.8         39           2
 L leucine             9.6         64           3
 M methionine          1.2          8           1
 N asparagine          5.2         35           3
 P proline             4.3         29           2
 Q glutamine           4.6         31           2
 R arginine            4.9         33           2
 S serine              7.9         53           3
 T threonine           7.0         47           1
 V valine              5.7         38           2
 W tryptophan          1.2          8           1
 Y tyrosine            2.4         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   midline 1 
MID1                  1.000   midline 1 
MID1                  1.000   midline 1 
MID2                  0.794   midline 2 isoform 2 
MID2                  0.782   midline 2 isoform 1 
TRIM36                0.153   tripartite motif-containing 36 isoform 1 
FSD1L                 0.143   fibronectin type III and SPRY domain containing 1-li...
FSD1L                 0.141   fibronectin type III and SPRY domain containing 1-l...
TRIM46                0.140   tripartite motif-containing 46 
FSD1                  0.138   fibronectin type III and SPRY domain containing 1 [H...
TRIM9                 0.125   tripartite motif protein 9 isoform 1 
TRIM67                0.122   tripartite motif-containing 67 
TRIM25                0.095   tripartite motif-containing 25 
TRIM63                0.092   muscle specific ring finger protein 1 
TRIM9                 0.092   tripartite motif protein 9 isoform 2 
TRIM54                0.075   ring finger protein 30 isoform 1 
FSD2                  0.074   fibronectin type III and SPRY domain containing 2 [H...
TRIM54                0.073   ring finger protein 30 isoform 2 
TRIM55                0.072   tripartite motif-containing 55 isoform 3 
TRIM55                0.072   tripartite motif-containing 55 isoform 1 
TRIM55                0.072   tripartite motif-containing 55 isoform 2 
TRIM42                0.058   tripartite motif-containing 42 
TRIM8                 0.054   tripartite motif-containing 8 
TRIM23                0.053   ADP-ribosylation factor domain protein 1 isoform gam...
TRIM23                0.053   ADP-ribosylation factor domain protein 1 isoform bet...
TRIM23                0.053   ADP-ribosylation factor domain protein 1 isoform alph...
BTN1A1                0.048   butyrophilin, subfamily 1, member A1 
CMYA5                 0.048   cardiomyopathy associated 5 
BTN3A3                0.048   butyrophilin, subfamily 3, member A3 isoform a 
BTN3A3                0.048   butyrophilin, subfamily 3, member A3 isoform b [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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