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Search of human proteins with 71043500
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71043500 beta
1,4-N-acetylgalactosaminyltransferase-transferase 3 [Homo sapiens]
(998 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71043500 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 2061 0.0
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 873 0.0
gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransfera... 91 4e-18
gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransfera... 91 4e-18
gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferas... 84 9e-16
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens] 73 1e-12
gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens] 67 1e-10
gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo ... 45 4e-04
gi|116268091 PHD finger protein 23 [Homo sapiens] 44 0.001
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 44 0.001
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 42 0.002
gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo ... 41 0.005
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 41 0.005
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 41 0.006
gi|38788219 zinc finger protein 428 [Homo sapiens] 40 0.011
gi|98986461 neurogenic differentiation 2 [Homo sapiens] 40 0.014
gi|4502805 chromogranin A precursor [Homo sapiens] 39 0.019
gi|239745093 PREDICTED: hypothetical protein XP_002343359 [Homo ... 39 0.019
gi|7657138 golgi integral membrane protein 4 [Homo sapiens] 39 0.019
gi|116235474 LKB1 interacting protein [Homo sapiens] 39 0.019
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 39 0.032
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 39 0.032
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 39 0.032
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 38 0.054
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 38 0.054
gi|110611184 chromodomain helicase DNA binding protein 2 isoform... 38 0.054
gi|21735492 protein phosphatase 1, regulatory (inhibitor) subuni... 37 0.093
gi|31563526 solute carrier family 24 (sodium/potassium/calcium e... 37 0.093
gi|110349719 titin isoform N2-A [Homo sapiens] 37 0.12
gi|239754474 PREDICTED: similar to mucin [Homo sapiens] 37 0.12
>gi|71043500 beta 1,4-N-acetylgalactosaminyltransferase-transferase
3 [Homo sapiens]
Length = 998
Score = 2061 bits (5339), Expect = 0.0
Identities = 998/998 (100%), Positives = 998/998 (100%)
Query: 1 MGSPRAARPPLLLRPVKLLRRRFRLLLALAVVSVGLWTLYLELVASAQVGGNPLNRRYGS 60
MGSPRAARPPLLLRPVKLLRRRFRLLLALAVVSVGLWTLYLELVASAQVGGNPLNRRYGS
Sbjct: 1 MGSPRAARPPLLLRPVKLLRRRFRLLLALAVVSVGLWTLYLELVASAQVGGNPLNRRYGS 60
Query: 61 WRELAKALASRNIPAVDPHLQFYHPQRLSLEDHDIDQGVSSNSSYLKWNKPVPWLSEFRG 120
WRELAKALASRNIPAVDPHLQFYHPQRLSLEDHDIDQGVSSNSSYLKWNKPVPWLSEFRG
Sbjct: 61 WRELAKALASRNIPAVDPHLQFYHPQRLSLEDHDIDQGVSSNSSYLKWNKPVPWLSEFRG 120
Query: 121 RANLHVFEDWCGSSIQQLRRNLHFPLYPHIRTTLRKLAVSPKWTNYGLRIFGYLHPFTDG 180
RANLHVFEDWCGSSIQQLRRNLHFPLYPHIRTTLRKLAVSPKWTNYGLRIFGYLHPFTDG
Sbjct: 121 RANLHVFEDWCGSSIQQLRRNLHFPLYPHIRTTLRKLAVSPKWTNYGLRIFGYLHPFTDG 180
Query: 181 KIQFAIAADDNAEFWLSLDDQVSGLQLLASVGKTGKEWTAPGEFGKFRSQISKPVSLSAS 240
KIQFAIAADDNAEFWLSLDDQVSGLQLLASVGKTGKEWTAPGEFGKFRSQISKPVSLSAS
Sbjct: 181 KIQFAIAADDNAEFWLSLDDQVSGLQLLASVGKTGKEWTAPGEFGKFRSQISKPVSLSAS 240
Query: 241 HRYYFEVLHKQNEEGTDHVEVAWRRNDPGAKFTIIDSLSLSLFTNETFLQMDEVGHIPQT 300
HRYYFEVLHKQNEEGTDHVEVAWRRNDPGAKFTIIDSLSLSLFTNETFLQMDEVGHIPQT
Sbjct: 241 HRYYFEVLHKQNEEGTDHVEVAWRRNDPGAKFTIIDSLSLSLFTNETFLQMDEVGHIPQT 300
Query: 301 AASHVDSSNALPRDEQPPADMLRPDPRDTLYRVPLIPKSHLRHVLPDCPYKPSYLVDGLP 360
AASHVDSSNALPRDEQPPADMLRPDPRDTLYRVPLIPKSHLRHVLPDCPYKPSYLVDGLP
Sbjct: 301 AASHVDSSNALPRDEQPPADMLRPDPRDTLYRVPLIPKSHLRHVLPDCPYKPSYLVDGLP 360
Query: 361 LQRYQGLRFVHLSFVYPNDYTRLSHMETHNKCFYQENAYYQDRFSFQEYIKIDQPEKQGL 420
LQRYQGLRFVHLSFVYPNDYTRLSHMETHNKCFYQENAYYQDRFSFQEYIKIDQPEKQGL
Sbjct: 361 LQRYQGLRFVHLSFVYPNDYTRLSHMETHNKCFYQENAYYQDRFSFQEYIKIDQPEKQGL 420
Query: 421 EQPGFEENLLEESQYGEVAEETPASNNQNARMLEGRQTPASTLEQDATDYRLRSLRKLLA 480
EQPGFEENLLEESQYGEVAEETPASNNQNARMLEGRQTPASTLEQDATDYRLRSLRKLLA
Sbjct: 421 EQPGFEENLLEESQYGEVAEETPASNNQNARMLEGRQTPASTLEQDATDYRLRSLRKLLA 480
Query: 481 QPREGLLAPFSKRNSTASFPGRTSHIPVQQPEKRKQKPSPEPSQDSPHSDKWPPGHPVKN 540
QPREGLLAPFSKRNSTASFPGRTSHIPVQQPEKRKQKPSPEPSQDSPHSDKWPPGHPVKN
Sbjct: 481 QPREGLLAPFSKRNSTASFPGRTSHIPVQQPEKRKQKPSPEPSQDSPHSDKWPPGHPVKN 540
Query: 541 LPQMRGPRPRPAGDSPRKTQWLNQVESYIAEQRRGDRMRPQAPGRGWHGEEEVVAAAGQE 600
LPQMRGPRPRPAGDSPRKTQWLNQVESYIAEQRRGDRMRPQAPGRGWHGEEEVVAAAGQE
Sbjct: 541 LPQMRGPRPRPAGDSPRKTQWLNQVESYIAEQRRGDRMRPQAPGRGWHGEEEVVAAAGQE 600
Query: 601 GQVEGEEEGEEEEEEEDMSEVFEYVPVFDPVVNWDQTFSARNLDFQALRTDWIDLSCNTS 660
GQVEGEEEGEEEEEEEDMSEVFEYVPVFDPVVNWDQTFSARNLDFQALRTDWIDLSCNTS
Sbjct: 601 GQVEGEEEGEEEEEEEDMSEVFEYVPVFDPVVNWDQTFSARNLDFQALRTDWIDLSCNTS 660
Query: 661 GNLLLPEQEALEVTRVFLKKLNQRSRGRYQLQRIVNVEKRQDQLRGGRYLLELELLEQGQ 720
GNLLLPEQEALEVTRVFLKKLNQRSRGRYQLQRIVNVEKRQDQLRGGRYLLELELLEQGQ
Sbjct: 661 GNLLLPEQEALEVTRVFLKKLNQRSRGRYQLQRIVNVEKRQDQLRGGRYLLELELLEQGQ 720
Query: 721 RVVRLSEYVSARGWQGIDPAGGEEVEARNLQGLVWDPHNRRRQVLNTRAQEPKLCWPQGF 780
RVVRLSEYVSARGWQGIDPAGGEEVEARNLQGLVWDPHNRRRQVLNTRAQEPKLCWPQGF
Sbjct: 721 RVVRLSEYVSARGWQGIDPAGGEEVEARNLQGLVWDPHNRRRQVLNTRAQEPKLCWPQGF 780
Query: 781 SWSHRAVVHFVVPVKNQARWVQQFIKDMENLFQVTGDPHFNIVITDYSSEDMDVEMALKR 840
SWSHRAVVHFVVPVKNQARWVQQFIKDMENLFQVTGDPHFNIVITDYSSEDMDVEMALKR
Sbjct: 781 SWSHRAVVHFVVPVKNQARWVQQFIKDMENLFQVTGDPHFNIVITDYSSEDMDVEMALKR 840
Query: 841 SKLRSYQYVKLSGNFERSAGLQAGIDLVKDPHSIIFLCDLHIHFPAGVIDAIRKHCVEGK 900
SKLRSYQYVKLSGNFERSAGLQAGIDLVKDPHSIIFLCDLHIHFPAGVIDAIRKHCVEGK
Sbjct: 841 SKLRSYQYVKLSGNFERSAGLQAGIDLVKDPHSIIFLCDLHIHFPAGVIDAIRKHCVEGK 900
Query: 901 MAFAPMVMRLHCGATPQWPEGYWEVNGFGLLGIYKSDLDRIGGMNTKEFRDRWGGEDWEL 960
MAFAPMVMRLHCGATPQWPEGYWEVNGFGLLGIYKSDLDRIGGMNTKEFRDRWGGEDWEL
Sbjct: 901 MAFAPMVMRLHCGATPQWPEGYWEVNGFGLLGIYKSDLDRIGGMNTKEFRDRWGGEDWEL 960
Query: 961 LDRILQAGLDVERLSLRNFFHHFHSKRGMWSRRQMKTL 998
LDRILQAGLDVERLSLRNFFHHFHSKRGMWSRRQMKTL
Sbjct: 961 LDRILQAGLDVERLSLRNFFHHFHSKRGMWSRRQMKTL 998
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase 4
[Homo sapiens]
Length = 1039
Score = 873 bits (2256), Expect = 0.0
Identities = 497/1053 (47%), Positives = 638/1053 (60%), Gaps = 96/1053 (9%)
Query: 15 PVKLLRRRFRLLLALAVVSVGLWTLYLELVASAQVGGNPLNRRYGSWRE---LAKALASR 71
PVK +R++ +LLL L ++S W Y+ L Q G L +R G R+ L R
Sbjct: 5 PVKKIRKQMKLLLLLLLLSCAAWLTYVHLGLVRQ--GRALRQRLGYGRDGEKLTSETDGR 62
Query: 72 NIPAVDPHLQFYHPQRLSLEDH------DIDQGVSSNSSYLKWN---KPVPWLSEFRGRA 122
+ A P Q S E+ D+D + L N + PW E++G+
Sbjct: 63 GVHAA-PSTQRAEDSSESREEEQAPEGRDLDMLFPGGAGRLPLNFTHQTPPWREEYKGQV 121
Query: 123 NLHVFEDWCGSSIQQLRRNLHFPLYPHIRTTLRKLAVSPKWTNYGLRIFGYLHPFTDGKI 182
NLHVFEDWCG ++ LRRNLHFPL+PH RTT++KLAVSPKW NYGLRIFG++HP DG +
Sbjct: 122 NLHVFEDWCGGAVGHLRRNLHFPLFPHTRTTVKKLAVSPKWKNYGLRIFGFIHPARDGDV 181
Query: 183 QFAIAADDNAEFWLSLDDQVSGLQLLASVGKTGKEWTAPGEFGKFRSQISKPVSLSASHR 242
QF++A+DDN+EFWLSLD+ + QL+A VGKTG EWTAPGEF KF SQ+SKP L AS R
Sbjct: 182 QFSVASDDNSEFWLSLDESPAAAQLVAFVGKTGSEWTAPGEFTKFSSQVSKPRRLMASRR 241
Query: 243 YYFEVLHKQNEEGTDHVEVAWRRNDPGAKFTIIDSLSLSLFTNETFLQMDEVGHIPQTAA 302
YYFE+LHKQ++ G+DHVEV WR PG KF +I S +SL+T+E+ L+MD V H+PQ+ A
Sbjct: 242 YYFELLHKQDDRGSDHVEVGWRAFLPGLKFEVISSAHISLYTDESALKMDHVAHVPQSPA 301
Query: 303 SHVDSSNALPRDEQPPADMLRPDPRDTLYRVPLIPKSHLRHVLPDCPYKPSYLVDGLPLQ 362
SHV P E+ ADMLRPDPRDT + P + S L +VL C Y P+Y+V P+
Sbjct: 302 SHVGGR---PPQEETSADMLRPDPRDTFFLTPRMESSSLENVLEPCAYAPTYVVKDFPIA 358
Query: 363 RYQGLRFVHLSFVYPNDYTRLSHMETHNKCFYQENAYYQDRFSFQEYIKIDQPEKQGLEQ 422
RYQGL+FV+LSFVYPNDYTRL+HMET NKCFY+E+ Y +RF F +Y+K+D+ E E+
Sbjct: 359 RYQGLQFVYLSFVYPNDYTRLTHMETDNKCFYRESPLYLERFGFYKYMKMDKEEGDEDEE 418
Query: 423 PGFE---------ENLLEESQYGEVAEETPASNNQNARMLEGRQTPASTLEQDATDYRLR 473
+ ++ L++ GE+ + + R PA+ + AT
Sbjct: 419 DEVQRRAFLFLNPDDFLDDEDEGELLDSLEPTEAAPPRSGPQSPAPAAPAQPGAT----- 473
Query: 474 SLRKLLAQPREGLLAPFSKRNSTAS--------FPGRTS--HIPVQQPEKRKQKPSPEPS 523
+PR+G S+ S A+ F GR V+QP + P
Sbjct: 474 LAPPTPPRPRDGGTPRHSRALSWAARAARPLPLFLGRAPPPRPAVEQPPPKVYVTRVRPG 533
Query: 524 QD-SPHSDK----WPPG-----HPVKNLP--QMRGPR--PRPAG---DSPRKTQWLNQVE 566
Q SP + WPP HP + LP Q+R P PRP G P+ TQ
Sbjct: 534 QRASPRAPAPRAPWPPFPGVFLHP-RPLPRVQLRAPPRPPRPHGRRTGGPQATQPRPPAR 592
Query: 567 SYIAEQRRGDRMR---PQAP--GRGWHGEEEVVAAAGQEGQVEGEE---EGEEEEEEED- 617
+ + R + R P AP E V + QV G + EGEEEEE ED
Sbjct: 593 AQATQGGREGQARTLGPAAPTVDSNLSSEARPVTSFLSLSQVSGPQLPGEGEEEEEGEDD 652
Query: 618 -------MSEVFEYV--PVF----DPVVNWDQTFSARNLDFQALRTDWIDLSCNTSGNLL 664
SE E P + ++W +TFS +DF+ LR+DW DL CN SGNL
Sbjct: 653 GAPGDEAASEDSEEAAGPALGRWREDAIDWQRTFSVGAVDFELLRSDWNDLRCNVSGNLQ 712
Query: 665 LPEQEALEVTRVFLKKLNQRSRGRYQLQRIVNVEKRQDQLRGGRYLLELELLEQGQRVVR 724
LPE EA++VT ++++LN R GR+ L RIVNVEKR+D RG R+LLELEL E+G +R
Sbjct: 713 LPEAEAVDVTAQYMERLNARHGGRFALLRIVNVEKRRDSARGSRFLLELELQERGGGRLR 772
Query: 725 LSEYVSAR-GWQGIDPAGGEEVEARNLQGLVWDPHNRRRQVLNTRAQEPKLCWPQGFSWS 783
LSEYV R + A GE E + P R P+LC P +W
Sbjct: 773 LSEYVFLRLPGARVGDADGESPEPAPAASV--RPDGR-----------PELCRPLRLAWR 819
Query: 784 HRAVVHFVVPVKNQARWVQQFIKDMENLFQVTGDPHFNIVITDYSSEDMDVEMALKRSKL 843
+VHF+VPVKNQARWV QF+ DM L TGD F++V+ D+ SEDMDVE AL+ ++L
Sbjct: 820 QDVMVHFIVPVKNQARWVAQFLADMAALHARTGDSRFSVVLVDFESEDMDVERALRAARL 879
Query: 844 RSYQYVKLSGNFERSAGLQAGIDLVKDPHSIIFLCDLHIHFPAGVIDAIRKHCVEGKMAF 903
YQY++ +GNFERSAGLQAG+D V+D SI+FLCDLHIHFP ++D IRKHCVEG++AF
Sbjct: 880 PRYQYLRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAF 939
Query: 904 APMVMRLHCGATPQWPEGYWEVNGFGLLGIYKSDLDRIGGMNTKEFRDRWGGEDWELLDR 963
AP+VMRL CG++P+ P GYWEVNGFGL GIYKSD DR+GGMNT+EFRD+WGGEDWELLDR
Sbjct: 940 APVVMRLSCGSSPRDPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDR 999
Query: 964 ILQAGLDVERLSLRNFFHHFHSKRGMWSRRQMK 996
+LQAGL+VERL LRNF+HH+HSKRGMWS R K
Sbjct: 1000 VLQAGLEVERLRLRNFYHHYHSKRGMWSVRSRK 1032
>gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransferase
1 [Homo sapiens]
Length = 532
Score = 91.3 bits (225), Expect = 4e-18
Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 24/224 (10%)
Query: 787 VVHFVVPVKNQARWVQQFIKDMENLFQVTGDPHFNIVITDYSSEDMD-----VEMALKRS 841
+++ +VP+ + +QF+++ + + D ++ + + E+++ +E K +
Sbjct: 262 LINVIVPLAKRVDKFRQFMQNFREMC-IEQDGRVHLTVVYFGKEEINEVKGILENTSKAA 320
Query: 842 KLRSYQYVKLSGNFERSAGLQAGIDLVKDPHSIIFLCDLHIHFPAGVIDAIRKHCVEGKM 901
R++ +++L+G F R GL G K + ++F CD+ I+F + ++ R + GK
Sbjct: 321 NFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVDIYFTSEFLNTCRLNTQPGKK 380
Query: 902 AFAPM--------VMRLHCGATPQWPE--------GYWEVNGFGLLGIYKSDLDRIGGMN 945
F P+ ++ H A P + G+W GFG+ Y+SD IGG +
Sbjct: 381 VFYPVLFSQYNPGIIYGHHDAVPPLEQQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFD 440
Query: 946 TKEFRDRWGGEDWELLDRILQAGLDVERLSLRNFFHHFHSKRGM 989
WGGED L + L + L V R +R FH +H KR M
Sbjct: 441 LD--IKGWGGEDVHLYRKYLHSNLIVVRTPVRGLFHLWHEKRCM 482
>gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransferase
1 [Homo sapiens]
Length = 532
Score = 91.3 bits (225), Expect = 4e-18
Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 24/224 (10%)
Query: 787 VVHFVVPVKNQARWVQQFIKDMENLFQVTGDPHFNIVITDYSSEDMD-----VEMALKRS 841
+++ +VP+ + +QF+++ + + D ++ + + E+++ +E K +
Sbjct: 262 LINVIVPLAKRVDKFRQFMQNFREMC-IEQDGRVHLTVVYFGKEEINEVKGILENTSKAA 320
Query: 842 KLRSYQYVKLSGNFERSAGLQAGIDLVKDPHSIIFLCDLHIHFPAGVIDAIRKHCVEGKM 901
R++ +++L+G F R GL G K + ++F CD+ I+F + ++ R + GK
Sbjct: 321 NFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVDIYFTSEFLNTCRLNTQPGKK 380
Query: 902 AFAPM--------VMRLHCGATPQWPE--------GYWEVNGFGLLGIYKSDLDRIGGMN 945
F P+ ++ H A P + G+W GFG+ Y+SD IGG +
Sbjct: 381 VFYPVLFSQYNPGIIYGHHDAVPPLEQQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFD 440
Query: 946 TKEFRDRWGGEDWELLDRILQAGLDVERLSLRNFFHHFHSKRGM 989
WGGED L + L + L V R +R FH +H KR M
Sbjct: 441 LD--IKGWGGEDVHLYRKYLHSNLIVVRTPVRGLFHLWHEKRCM 482
>gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferase 2
[Homo sapiens]
Length = 542
Score = 83.6 bits (205), Expect = 9e-16
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 24/224 (10%)
Query: 785 RAVVHFVVPVKNQARWVQQFIKDMENLFQVTGDPHFNIVITDYSSEDMD-----VEMALK 839
R++++ +VP+ + QF+++ ++ + D ++ + + E + +E
Sbjct: 269 RSIINIIVPLAERTEAFVQFMQNFRDVC-IHQDKKIHLTVVYFGKEGLSKVKSILESVTS 327
Query: 840 RSKLRSYQYVKLSGNFERSAGLQAGIDLVKDPHSIIFLCDLHIHFPAGVIDAIRKHCVEG 899
S +Y V L+ F R GL G ++F CD+ I+F A +++ R + G
Sbjct: 328 ESNFHNYTLVSLNEEFNRGRGLNVGARAWDKGEVLMFFCDVDIYFSAEFLNSCRLNAEPG 387
Query: 900 KMAFAPMVMRLHCGA----------------TPQWPEGYWEVNGFGLLGIYKSDLDRIGG 943
K F P+V L+ A + G+W GFG+ Y+SD IGG
Sbjct: 388 KKVFYPVVFSLYNPAIVYANQEVPPPVEQQLVHKKDSGFWRDFGFGMTCQYRSDFLTIGG 447
Query: 944 MNTKEFRDRWGGEDWELLDRILQAGLDVERLSLRNFFHHFHSKR 987
+ + WGGED L + L L V R + FH +H KR
Sbjct: 448 FDMEV--KGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKR 489
>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
Length = 802
Score = 73.2 bits (178), Expect = 1e-12
Identities = 80/340 (23%), Positives = 147/340 (43%), Gaps = 48/340 (14%)
Query: 682 NQRSRGRY-QLQRIVNVEKRQDQLRGGRYLLELELL---EQGQRV---VRLSEYVSARGW 734
N ++RGR + I +R + + G Y+L+L LL +G+++ VR Y+ + +
Sbjct: 419 NAKTRGRIIDFKEIQYGYRRVNPMYGAEYILDLLLLYKKHKGKKMTVPVRRHAYLQ-QTF 477
Query: 735 QGIDPAGGEEVEARNLQGLVWDPHNRRRQVLNTRAQEPKLCWP---QGFSWSHRAV---- 787
I EE++A+ L + N+ L+ + K P G H+
Sbjct: 478 SKIQFVEHEELDAQELAKRI----NQESGSLSFLSNSLKKLVPFQLPGSKSEHKEPKDKK 533
Query: 788 VHFVVPVKNQARWVQQFIKDMENLFQVTGDPHFNI-VITDYSSEDMDVEMALKRSKLRSY 846
++ ++P+ + F++ M N + P+ N+ ++ + D + + A + +R Y
Sbjct: 534 INILIPLSGR---FDMFVRFMGNFEKTCLIPNQNVKLVVLLFNSDSNPDKAKQVELMRDY 590
Query: 847 ---------QYVKLSGNFERSAGLQAGIDLVKDPHSIIFLCDLHIHFPAGVIDAIRKHCV 897
Q + +SG F R+ L+ G + S++F CD+ + F + R + V
Sbjct: 591 RIKYPKADMQILPVSGEFSRALALEVGSSQFNN-ESLLFFCDVDLVFTTEFLQRCRANTV 649
Query: 898 EGKMAFAPMVMR------LHCGATPQ-------WPEGYWEVNGFGLLGIYKSDLDRIGGM 944
G+ + P++ ++ G P G+W GFG+ IYK DL R+GG
Sbjct: 650 LGQQIYFPIIFSQYDPKIVYSGKVPSDNHFAFTQKTGFWRNYGFGITCIYKGDLVRVGGF 709
Query: 945 NTKEFRDRWGGEDWELLDRILQAGLDVERLSLRNFFHHFH 984
+ WG ED +L ++++QAGL R H H
Sbjct: 710 DVS--IQGWGLEDVDLFNKVVQAGLKTFRSQEVGVVHVHH 747
>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
Length = 882
Score = 66.6 bits (161), Expect = 1e-10
Identities = 76/333 (22%), Positives = 140/333 (42%), Gaps = 37/333 (11%)
Query: 682 NQRSRGRY-QLQRIVNVEKRQDQLRGGRYLLELELLEQGQRVVRLSEYVSARGW--QGID 738
N +SRGR + I +R + + G Y+L+L LL + + +L+ V + Q
Sbjct: 509 NAKSRGRLIDFKEIQYGYRRVNPMHGVEYILDLLLLYKRHKGRKLTVPVRRHAYLQQLFS 568
Query: 739 PAGGEEVEARNLQGLVWDPHNRRRQVLNTRAQEPKLCWP-QG---FSWSHRAVVHFVVPV 794
E E ++ LV + N Q + + K+ QG + VH +VP+
Sbjct: 569 KPFFRETEELDVNSLV-ESINSETQSFSFISNSLKILSSFQGAKEMGGHNEKKVHILVPL 627
Query: 795 KNQARWVQQFIKDMENLFQVTGDPHFNI-VITDYSSEDMDVEMALKRSKLRSYQ------ 847
+ +F+++ EN+ + P N+ ++ S D + + ++ YQ
Sbjct: 628 IGRYDIFLRFMENFENMCLI---PKQNVKLVIILFSRDSGQDSSKHIELIKGYQNKYPKA 684
Query: 848 ---YVKLSGNFERSAGLQAGIDLVKDPHSIIFLCDLHIHFPAGVIDAIRKHCVEGKMAFA 904
+ + G F R GL+ D +++ CD+ + F + R + ++G+ +
Sbjct: 685 EMTLIPMKGEFSRGLGLEMA-SAQFDNDTLLLFCDVDLIFREDFLQRCRDNTIQGQQVYY 743
Query: 905 PMVM-----RLHCGATPQWPE--------GYWEVNGFGLLGIYKSDLDRIGGMNTKEFRD 951
P++ ++ G P + G+W G+G+ IYKSDL GG +T
Sbjct: 744 PIIFSQYDPKVTNGGNPPTDDYFIFSKKTGFWRDYGYGITCIYKSDLLGAGGFDTS--IQ 801
Query: 952 RWGGEDWELLDRILQAGLDVERLSLRNFFHHFH 984
WG ED +L ++++ +GL R H FH
Sbjct: 802 GWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFH 834
>gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo
sapiens]
Length = 336
Score = 44.7 bits (104), Expect = 4e-04
Identities = 43/149 (28%), Positives = 60/149 (40%), Gaps = 25/149 (16%)
Query: 416 EKQGLEQPGFEENLL------------EESQYGEVAEETPASNNQNARMLEGRQTPASTL 463
EK+G++ P NLL S +A+ P NAR R
Sbjct: 21 EKKGVDDPQLALNLLLFLPLAAGGRCRVPSGLRRLADPIPG----NARAGVARTEQRDHS 76
Query: 464 EQDATDYRLRSLRKLLAQPREGLLAPFSKRNSTASFPGRTSHIPVQQPEKRKQKPSPEPS 523
+ RL S + P L P S + A P + H P + P + Q P PS
Sbjct: 77 QSSPPCRRLASYSFWSSAPWRELTLPVSPADPAA--PPSSPHAPTRPPPQAVQ---PRPS 131
Query: 524 QDSPHSDKWPPGHPVKNLPQMRGPRPRPA 552
+ +P S+ PPG +LP++RGP PR A
Sbjct: 132 EPTPGSEALPPG----SLPEVRGPHPRRA 156
>gi|116268091 PHD finger protein 23 [Homo sapiens]
Length = 403
Score = 43.5 bits (101), Expect = 0.001
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 544 MRGPRPRPAGDSPRKTQWLNQVESYIAEQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQV 603
+R PRP P GD ++++ + + + RGDR+ P P + A +
Sbjct: 199 LRRPRPTP-GDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQ----------APPSDTDS 247
Query: 604 EGEEEGEEEEEEEDMSEV 621
E EEE EEEEEEE+M+ V
Sbjct: 248 EEEEEEEEEEEEEEMATV 265
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 43.5 bits (101), Expect = 0.001
Identities = 52/221 (23%), Positives = 75/221 (33%), Gaps = 17/221 (7%)
Query: 414 QPEKQGLEQPGFEENLLEESQYGEV----AEETPASNNQNARMLEGRQTPASTLEQDATD 469
QPE +G E P E+ E++ E E+ P S A+ E A Q ++
Sbjct: 1900 QPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEAAQEAEGQTQPESE 1959
Query: 470 YRLRSLRKLLAQPREGLLAPFSKRNSTASFPGRTSHIPVQQPEKRK-QKPSPEPSQDSPH 528
+ AQP + T G QPE + P E
Sbjct: 1960 VIESQEAEEEAQPESEDVEALEVEVETQEAEGEA------QPESEDVEAPEAEGEMQEAE 2013
Query: 529 SDKWPPGHPVKNLPQMRGPRPRPAGDSPRKTQWLNQVESYIAEQRRGDRMRPQAPGRGW- 587
+ P V+ P+ G + +KT+ Q ES E + +A G
Sbjct: 2014 EEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEVQE 2073
Query: 588 -----HGEEEVVAAAGQEGQVEGEEEGEEEEEEEDMSEVFE 623
H E E V A EG+ + E EG E E E ++ E
Sbjct: 2074 AEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAE 2114
Score = 39.3 bits (90), Expect = 0.019
Identities = 49/215 (22%), Positives = 79/215 (36%), Gaps = 15/215 (6%)
Query: 414 QPEKQGLEQPGFEENLLEESQYGEVAEET----PASNNQNARMLEGRQTPAST-LEQDAT 468
QPE G+E P EE E GEV E P S + +A+ EG P S +E
Sbjct: 2049 QPESDGVEAPEAEEEAQEAE--GEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEA 2106
Query: 469 DYRLRSLRKLLAQPREGLLAPFSKRNSTASFPGRTSHIPVQQPEKRKQKPSPEPSQDSPH 528
+ + + A EG P S+ G QPE + + P
Sbjct: 2107 EGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEA------QPESEGVEAQDAEGEAQPE 2160
Query: 529 SDKWPPGHPVKNL-PQMRGPR-PRPAGDSPRKTQWLNQVESYIAEQRRGDRMRPQAPGRG 586
S+ + P++ G P G++ +++ + E+ Q + +
Sbjct: 2161 SEGIEAQEAEEEAQPELEGVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEE 2220
Query: 587 WHGEEEVVAAAGQEGQVEGEEEGEEEEEEEDMSEV 621
E E V EG+ + E EGE + E++ +V
Sbjct: 2221 AQPEPEGVETPEAEGEAQPESEGETQGEKKGSPQV 2255
Score = 37.4 bits (85), Expect = 0.071
Identities = 50/212 (23%), Positives = 80/212 (37%), Gaps = 36/212 (16%)
Query: 414 QPEKQGLEQPGFEENLLEESQYGEV----AEETPASNNQNARMLEGRQTPASTLEQDATD 469
QPE + +E P E + E + + E P S + A+ +EG E DA
Sbjct: 1994 QPESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGE---TQKTEGDA-- 2048
Query: 470 YRLRSLRKLLAQPR-EGLLAPFSKRNSTASFPGRTSHIPVQQPEKRKQKPSPEPSQDSPH 528
QP +G+ AP ++ + + + VQ+ E S +
Sbjct: 2049 -----------QPESDGVEAPEAEEEA------QEAEGEVQEAEGEAHPESEDVDAQEAE 2091
Query: 529 SDKWPPGHPVKNLPQMRGPRPRPAGDSPRKTQWLNQVESYIAEQRRGDRMRPQAPGRGWH 588
+ P V+ P+ G + G +T+ Q ES E P+A G
Sbjct: 2092 GEAQPESEGVE-APEAEGEAQKAEGIEAPETEGEAQPESEGIEA-------PEAEGEA-Q 2142
Query: 589 GEEEVVAAAGQEGQVEGEEEGEEEEEEEDMSE 620
E E V A EG+ + E EG E +E E+ ++
Sbjct: 2143 PESEGVEAQDAEGEAQPESEGIEAQEAEEEAQ 2174
Score = 37.4 bits (85), Expect = 0.071
Identities = 56/236 (23%), Positives = 85/236 (36%), Gaps = 42/236 (17%)
Query: 407 QEYIKIDQPEKQGLEQPGFEENLLEESQYGEVAEETPASNNQNARMLEGRQTPASTLEQD 466
QE + QPE +G+E P E ES+ E P + + LEG + P + E
Sbjct: 2167 QEAEEEAQPELEGVEAPEAEGEAQPESE----GIEAPEAEGEAQPELEGVEAPEAEEE-- 2220
Query: 467 ATDYRLRSLRKLLAQPR-EGLLAPFSKRNSTASFPGRTSHIPVQQPE----KRKQKPSPE 521
AQP EG+ P ++ + G T P+ + + + E
Sbjct: 2221 -------------AQPEPEGVETPEAEGEAQPESEGETQGEKKGSPQVSLGDGQSEEASE 2267
Query: 522 PSQDSPHSDKWPPGHPVKNLPQMRGPRPRPAGDSPRKTQWLN--QVESYIAEQRRGDRMR 579
S P PP P + P R P + S R + W N Q +S + GD
Sbjct: 2268 SSSPVPEDRPTPPPSPGGDTPHQR-PGSQTGPSSSRASSWGNCWQKDSE-NDHVLGDTRS 2325
Query: 580 PQAPGRGW-HGE-------------EEVVAAAGQEGQVEGEEEGEEEEEEEDMSEV 621
P A G H E E+ A G +G EG + +E++ + +
Sbjct: 2326 PDAKSTGTPHAERKATRMYPESSTSEQEEAPLGSRTPEQGASEGYDLQEDQALGSL 2381
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 42.4 bits (98), Expect = 0.002
Identities = 61/237 (25%), Positives = 90/237 (37%), Gaps = 21/237 (8%)
Query: 401 QDRFSFQEYIKIDQPEKQGLEQPGFEENLLEESQYGEVAEETPASNNQNARMLEGRQTPA 460
++ F +E++ ID+ + PG E + + E E P R G +
Sbjct: 535 EEDFDSKEWVIIDKETELKDFPPGAEPSTSGTTDE-EPEELRPLPEEGEERRRLGAEPTV 593
Query: 461 STLEQDATDYRLRSLRKLLAQPREGLLAPFSKRNSTAS--FPGRTSHIPVQQ-PEKRKQK 517
+ L+ L QP L+ R+ T+ PG SH P+ P R+++
Sbjct: 594 RPRGRSMQALAEEDLQHLPPQPLPPQLSQGDGRSETSQPPTPGSPSHSPLHSGPRPRRRE 653
Query: 518 PSPEPSQDSPHSDKWPPGHPVKNLPQMRGPRPRPAGDSPR-------KTQWLNQVESY-- 568
P Q S P V LP+ P P D R + + LN+V
Sbjct: 654 SDPTGPQRQVFSVA--PPFEVNGLPRAV-PLSLPYQDFKRDLSDYRERARLLNRVRRVGF 710
Query: 569 -----IAEQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEEEEEDMSE 620
Q ++PQA G+ EEE +E + E EEE EEEEEEE+ E
Sbjct: 711 SHMLLTTPQVPLAPVQPQANGKEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 767
>gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo
sapiens]
Length = 359
Score = 41.2 bits (95), Expect = 0.005
Identities = 50/193 (25%), Positives = 68/193 (35%), Gaps = 42/193 (21%)
Query: 416 EKQGLEQPGFEENLL------------EESQYGEVAEETPASNNQNARMLEGRQTPASTL 463
EK+G++ P NLL S +A+ P NAR R
Sbjct: 21 EKKGVDDPQLALNLLLFLPLAAGGRCRVPSGLRRLADPIPG----NARAGVARTEQRDHS 76
Query: 464 EQDATDYRLRSLRKLLAQPREGLLAPFSKRNSTASFPGRTSHIPVQQPEKRKQKPSPEPS 523
+ RL S + P L P S + A P + H P + P + Q P PS
Sbjct: 77 QSSPPCRRLASYSFWSSAPWRELTLPVSPADPAA--PPSSPHAPTRPPPQAVQ---PRPS 131
Query: 524 QDSPHSDKWPPGHPVKNLPQMRGPRPRPAGDSPRKTQWLNQVESYIAEQRRGDRMRPQAP 583
+ +P S+ PPG +LP+ P RPA P + + R P
Sbjct: 132 EPTPGSEALPPG----SLPEAAQPPSRPAAQPPSRPAF-----------------RSPRP 170
Query: 584 GRGWHGEEEVVAA 596
RG H VV A
Sbjct: 171 VRGPHPRRAVVVA 183
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 41.2 bits (95), Expect = 0.005
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 30/167 (17%)
Query: 455 GRQTPASTLEQDATDYRLRSLRKLLAQPREGLLAPFSKRNSTASFPGRTSHIPVQQPEKR 514
GR TPA ++T + R + +E L+ + S++ GR +PV +P
Sbjct: 299 GRPTPAPRKASESTTPAPPTPRPRSSLQQENLV---EQAGSSSLVNGRLHELPVPKP--- 352
Query: 515 KQKPSPEPSQDSPHSDKWPPGHPVKNLPQMRGPRPRPAGDSP-RKTQWLNQVESYIAEQR 573
+ +P+PS+ +P K PP + + P P P SP +Q QVE
Sbjct: 353 --RGTPKPSEGTPAPRKDPPWITLVQAEPKKKPAPLPPSSSPGPPSQDSRQVE------- 403
Query: 574 RGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEEEEEDMSE 620
+G E VA +E + EEEEED E
Sbjct: 404 --------------NGGTEEVAQPSPTASLESKPYNPFEEEEEDKEE 436
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 40.8 bits (94), Expect = 0.006
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 564 QVESYIAEQRRGDRMRPQAPGRG----WHGEEEVVAAAGQEGQVEGEEEGEEEEEEEDMS 619
+VE E+ +G+R + G G GEEE +EG+ +GEEEGEE E EE+
Sbjct: 813 EVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGE 872
Query: 620 E 620
E
Sbjct: 873 E 873
Score = 38.9 bits (89), Expect = 0.024
Identities = 56/248 (22%), Positives = 92/248 (37%), Gaps = 29/248 (11%)
Query: 378 NDYTRLSHMETHNKCFYQENAYYQDRFSFQEYIKIDQPEKQGLEQPGFEENLLEESQYGE 437
++Y +S M+ C + Q F Q I+ + +E P +E E+S+
Sbjct: 545 DEYEEMSEMKEGKAC---KQHVSQGIFMTQPATTIEAFSDEEVEIPEEKEGA-EDSKGNG 600
Query: 438 VAEETPASNNQNARMLEGRQTPASTLEQDATDYRLRS--LRKLLAQPREGLLAPFSKRNS 495
+ E+ +N +N ++ GR+ L D TD S K + + +G P + +
Sbjct: 601 IEEQEVEANEENVKVHGGRKEKTEILSDDLTDKAEVSEGKAKSVGEAEDG---PEGRGDG 657
Query: 496 TASFPGRTSHIPVQQPEKRKQKPSPEPSQDSPHSDKWPPGHPVKNLPQMRGPRPRPAGDS 555
T G + Q E+ K + +D + PG K L + + R +
Sbjct: 658 TCE-EGSSGAEHWQDEEREKGE------KDKGRGEMERPGEGEKELAEKEEWKKRDGEEQ 710
Query: 556 PRKTQWLNQVESYIAEQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEEEE 615
+K + + E G GEEE +EG E EEE E E +E
Sbjct: 711 EQKEREQGHQKERNQEMEEG-------------GEEEHGEGEEEEGDREEEEEKEGEGKE 757
Query: 616 EDMSEVFE 623
E E E
Sbjct: 758 EGEGEEVE 765
Score = 36.2 bits (82), Expect = 0.16
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 571 EQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEEEEEDMSEV 621
E+ G+ + G G E E EG+ EGE EGEEEEE E EV
Sbjct: 975 EEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEV 1025
Score = 35.0 bits (79), Expect = 0.35
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 543 QMRGPRPRPAGDSPRKTQWLNQVESYIAEQRRGDRMRPQAPGRGWHGEE--EVVAAAGQE 600
++ G R + G+ +K + + E E +G+ + GRG EE EV +E
Sbjct: 763 EVEGEREKEEGER-KKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEE 821
Query: 601 GQVEGEEEGEEEEEEEDMSE 620
G+ E EEE EE E EE+ E
Sbjct: 822 GKGEREEEEEEGEGEEEEGE 841
Score = 35.0 bits (79), Expect = 0.35
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 571 EQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEEEEEDMSEVFE 623
E+ G+R + + G+ GEEE G+E + EG E +EE E + EV E
Sbjct: 769 EKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEE 821
Score = 34.3 bits (77), Expect = 0.60
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 571 EQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEE-----GEEEEEEEDMSE 620
E+ G+ + G G GEEE G+EG+ EGEEE GEEEE EE+ E
Sbjct: 949 EEEEGEWEGEEEEGEG-EGEEEG-EGEGEEGEGEGEEEEGEGEGEEEEGEEEGEE 1001
Score = 33.9 bits (76), Expect = 0.78
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 571 EQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEEEEEDMSE 620
E+ G+ + G+G EEE G+E EGE EGEEEE E + E
Sbjct: 843 EEEEGEGEEEEGEGKG---EEEGEEGEGEEEGEEGEGEGEEEEGEGEGEE 889
Score = 33.5 bits (75), Expect = 1.0
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 571 EQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEEEEED 617
E G+ + G G EE +EG+ EGEEEGE E EEE+
Sbjct: 870 EGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEE 916
Score = 32.7 bits (73), Expect = 1.7
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 571 EQRRGDRMRPQAPGRG--------WHGEEEVVAAAGQEGQVEG-EEEGEEEEEEED 617
E+ G+ + G+G GEEE G++G+ EG EEEGE E EEE+
Sbjct: 906 EEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEE 961
Score = 32.7 bits (73), Expect = 1.7
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 581 QAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEEEEEDMSE 620
+ G GE E G+ + EGEEEGEEE E E+ E
Sbjct: 971 EGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGE 1010
Score = 32.3 bits (72), Expect = 2.3
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 571 EQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEEEEE 616
E G+ + G G EEE +EG+ E E EGE EEEEE
Sbjct: 973 EGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEE 1018
Score = 32.0 bits (71), Expect = 3.0
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 589 GEEEVVAAAGQEGQVEGEE---EGEEEEEEEDMSE 620
GE E EG+VEGEE EGEEEE EE+ E
Sbjct: 1011 GEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEE 1045
Score = 31.2 bits (69), Expect = 5.1
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 571 EQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEG-EEEGEEEEEEEDMSE 620
E G+ G G EEE +EG+ EG EEEGE E EEE E
Sbjct: 861 EGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGE 911
Score = 30.4 bits (67), Expect = 8.7
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 571 EQRRGDRMRPQAPGRGWH-GEEEVVAAAGQ-EGQVEGEEEGEEEEEE 615
E+ G+ + G G GE E G+ EG+ EGE EGEEEE E
Sbjct: 872 EEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGE 918
Score = 30.4 bits (67), Expect = 8.7
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 571 EQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEE---GEEEEEEEDMSE 620
E+ G+ + G G GE E +EG+ EGEEE GE EEE E E
Sbjct: 926 EEGEGEGEEEEGEGEGEDGEGE---GEEEEGEWEGEEEEGEGEGEEEGEGEGE 975
Score = 30.4 bits (67), Expect = 8.7
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 581 QAPGRGWHGEEEVVAAA--GQEGQVEGEEEGEEEEEEEDMSE 620
+ G G EE V G+EG+ EGEEE EEE EE E
Sbjct: 1008 EGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKE 1049
>gi|38788219 zinc finger protein 428 [Homo sapiens]
Length = 188
Score = 40.0 bits (92), Expect = 0.011
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 504 SHIPVQQPEKRKQKPSPEPSQDSPHSDKWPPGHPVKNLPQMRGPRPRPAGDSPRKTQWLN 563
S + +P+ +++ E +++ ++ PG+ VK ++ G R P+ +PR Q
Sbjct: 33 SEYTLSEPDSEEEEDEEEEEEETTDDPEYDPGYKVKQ--RLGGGRGGPSRRAPRAAQPPA 90
Query: 564 QVESYIAEQRRGD-----------------RMRPQAPGRGWHGEEEVVAAAGQEGQVEGE 606
Q G+ + P GR EEE AG EG+ G
Sbjct: 91 QPCQLCGRSPLGEAPPGTPPCRLCCPATAPQEAPAPEGRALGEEEEEPPRAG-EGRPAGR 149
Query: 607 EEGEEEEEE 615
EE EEEEEE
Sbjct: 150 EEEEEEEEE 158
>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
Length = 382
Score = 39.7 bits (91), Expect = 0.014
Identities = 39/125 (31%), Positives = 46/125 (36%), Gaps = 38/125 (30%)
Query: 498 SFPGRTSHIPVQQPEKRKQKPSPEPSQDSPHSDKW--PPGHPVKNLPQMRGPRPRPAGDS 555
S PG S +P K + D P SDK PP P P P P
Sbjct: 7 SEPGLLSDVP-------KFASWGDGEDDEPRSDKGDAPPPPP---------PAPGPGAPG 50
Query: 556 PRKTQWLNQVESYIAEQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEEEE 615
P R P RG G E +A +EG++ GEEE EEEEEE
Sbjct: 51 PA-------------------RAAKPVPLRGEEGTEATLAEVKEEGELGGEEE-EEEEEE 90
Query: 616 EDMSE 620
E + E
Sbjct: 91 EGLDE 95
>gi|4502805 chromogranin A precursor [Homo sapiens]
Length = 457
Score = 39.3 bits (90), Expect = 0.019
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 491 SKRNSTASFPGRTSHIPVQQPEKRKQKPSPEPSQDSPHSDKWPPGHPVKNLPQMRGPRPR 550
++++ A+ R +P E + + + P ++ ++ HP +LP + P P+
Sbjct: 139 AEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEEATNTHPPASLPSQKYPGPQ 198
Query: 551 PAGDSPRKTQWLNQVESYIAEQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGE 610
GDS +Q L ++ +G P GW + E +E + E E GE
Sbjct: 199 AEGDSEGLSQGL-------VDREKGLSAEP-----GWQAKRE-----EEEEEEEEAEAGE 241
Query: 611 EEEEEED 617
E EE+
Sbjct: 242 EAVPEEE 248
>gi|239745093 PREDICTED: hypothetical protein XP_002343359 [Homo
sapiens]
Length = 142
Score = 39.3 bits (90), Expect = 0.019
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 552 AGDSPRKTQWLNQVESYIAEQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEE 611
AG S RK+Q + E E+RR ++ R + G E+E +E + E EEE EE
Sbjct: 58 AGTSARKSQ--RREEKRREEKRREEKRREEKRREGKRREKEEEKEEEEEEEEEEEEEEEE 115
Query: 612 EEEEE 616
EEEEE
Sbjct: 116 EEEEE 120
>gi|7657138 golgi integral membrane protein 4 [Homo sapiens]
Length = 696
Score = 39.3 bits (90), Expect = 0.019
Identities = 100/479 (20%), Positives = 177/479 (36%), Gaps = 86/479 (17%)
Query: 363 RYQGLRFVHLSFVYPNDYTRLSHM---ETHNKCFYQENAYYQDRFSFQEYIKIDQPEKQG 419
RY L H ++ + H E H K + + D Q+Y+++ Q ++Q
Sbjct: 110 RYSALNVQHQMLKSQHEELKKQHSDLEEEHRKQGEDFSRTFNDHK--QKYLQLQQEKEQE 167
Query: 420 LEQPGFEE---NLLEESQYGEVAEETPASNNQNARM---------------LEGRQTPAS 461
L + +E NL EE++ A + + Q+ + LE ++ +
Sbjct: 168 LSK--LKETVYNLREENRQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALA 225
Query: 462 TLEQDATDY--------RLRSLRKLLAQPREGLLAPFSKRNSTASFPGRTSHIPVQQPEK 513
+ +Y R+ SLRK P ++N T + +H P Q
Sbjct: 226 AAQTQVAEYKQLKDTLNRIPSLRKP---------DPAEQQNVT-----QVAHSP-QGYNT 270
Query: 514 RKQKPSPEPSQDSPHSDKWPPGHPVKNLPQ---MRGPRPRPAGDSPRKTQWLNQVESYIA 570
++KP+ E + S ++D W V + + P + A +VE
Sbjct: 271 AREKPTREVQEVSRNNDVWQNHEAVPGRAEDTKLYAPTHKEAEFQAPPEPIQQEVERREP 330
Query: 571 EQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEEEEEDMSEVF-------- 622
E+ + + +A EEE + GQ +E E + EE++ + E
Sbjct: 331 EEHQVEEEHRKAL------EEEEMEQVGQAEHLEEEHDPSPEEQDREWKEQHEQREAANL 384
Query: 623 -------EYVPVFDPVVNWDQTFSARNLDFQALRTDWIDLSCNTSGNLLLPEQEALEVTR 675
E P P++ + + L+ Q L ++ L QEAL R
Sbjct: 385 LEGHARAEVYPSAKPMIKFQSPYE-EQLEQQRLAVQQVE-----EAQQLREHQEALHQQR 438
Query: 676 VFLKKLNQRSRGRYQLQRIVNVEKRQDQLRGGRYLLELELLEQGQRVVRLSEYVSARGWQ 735
+ L Q+ + + Q+ R + ++ RQ +L GR + +L +Q ++ V Q
Sbjct: 439 LQGHLLRQQEQQQQQVAREMALQ-RQAELEEGRPQHQEQLRQQAHYDAMDNDIVQGAEDQ 497
Query: 736 GID-PAGGEEVEARNLQGLVWDPHNRRRQVLNTRAQEPKLCWPQGFSWSHRAVVHFVVP 793
GI G E + ++ DP NR R Q P+ P+ S + RA V + P
Sbjct: 498 GIQGEEGAYERDNQHQDEAEGDPGNRH----EPREQGPREADPE--SEADRAAVEDINP 550
>gi|116235474 LKB1 interacting protein [Homo sapiens]
Length = 1099
Score = 39.3 bits (90), Expect = 0.019
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 517 KPSPEPSQDSPHSDKWPPGHPVKNLPQMRGPRPRPAGDSPRKTQWLNQVESYIAEQRRGD 576
+PS P +P + P P + PRP P + R Q + ++E+ R +
Sbjct: 449 EPSGNPLPATPTTSA-PSAPPASSQGPDTAPRPSPPQEEARGPQ---ESPQKMSEEVRAE 504
Query: 577 RMRPQAPGRGWHGEEEVVAAAGQEGQV--EGEEE-GEEEEEEEDMSEV 621
PQ G+EE +EG++ +GEEE GEEEEEE+D EV
Sbjct: 505 ---PQEEEEEKEGKEEK-----EEGEMVEQGEEEAGEEEEEEQDQKEV 544
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 38.5 bits (88), Expect = 0.032
Identities = 47/152 (30%), Positives = 54/152 (35%), Gaps = 17/152 (11%)
Query: 471 RLRSLRK-LLAQPREGLLAPFSKRNSTASFPGRTSHIPVQQPEKRKQKPSPEPSQDSPHS 529
RLR+ R P+ P R+ T G P P PSP PS SP S
Sbjct: 150 RLRAWRTGKTVSPQSNSSRPTCARHLTLG-TGDGGPAPPPAPSSASSSPSPSPSSSSP-S 207
Query: 530 DKWPPGHPVKNLPQMRGPRPR-PAGDSPRKTQWLNQVESYIAEQRRGDRMRPQAPGRGWH 588
PP P P P PR D T E+Y + P P
Sbjct: 208 PPPPPPPPAPPAP----PAPRFDIYDPFHPTD-----EAYSPPPAPEQKYDPFEPT---- 254
Query: 589 GEEEVVAAAGQEGQVEGEEEGEEEEEEEDMSE 620
G +A + E EEE EEEEEEED E
Sbjct: 255 GSNPSSSAGTPSPEEEEEEEEEEEEEEEDEEE 286
Score = 33.9 bits (76), Expect = 0.78
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 591 EEVVAAAGQEGQVEGEEEGEEEEEEEDMSE 620
EE AG G E EEE EEEEEEE+ E
Sbjct: 1009 EEATEEAGVRGGAEEEEEEEEEEEEEEEEE 1038
Score = 30.4 bits (67), Expect = 8.7
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 591 EEVVAAAGQEGQVEGEEEGEEEEEEED 617
EE G E + E EEE EEEEEEE+
Sbjct: 1013 EEAGVRGGAEEEEEEEEEEEEEEEEEE 1039
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 38.5 bits (88), Expect = 0.032
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 40/196 (20%)
Query: 445 SNNQNARMLEGRQTPASTLEQDATDYRLRSLRKLLAQPREGLLAPFSKRNSTASFPGRTS 504
SNN+ +G+ S E +Y+ K L R+ L+ + R + P +T
Sbjct: 79 SNNKRIVSTKGK----SATEYKNEEYQRSERNKRLDADRKIRLSSSASREPYKNQPEKTC 134
Query: 505 HIPVQQPEKRKQKPSPEPSQDSPHSDKWPPGHPVKNLPQMRGPRPRPAGDSPRKTQWLNQ 564
+ + PE+R + P+P+ S+ ++ R A S + ++
Sbjct: 135 -VRKRDPERRAKSPTPDGSE------------------RIGLEVDRRASRSSQSSKEEVN 175
Query: 565 VESYIAEQRRGDRMRPQAPGRGWHGEEEVVAA-----------------AGQEGQVEGEE 607
E Y ++ G G EEE V ++G+ E EE
Sbjct: 176 SEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEE 235
Query: 608 EGEEEEEEEDMSEVFE 623
E EEEEEEE+ E +E
Sbjct: 236 EEEEEEEEEEEEEEYE 251
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 38.5 bits (88), Expect = 0.032
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 40/196 (20%)
Query: 445 SNNQNARMLEGRQTPASTLEQDATDYRLRSLRKLLAQPREGLLAPFSKRNSTASFPGRTS 504
SNN+ +G+ S E +Y+ K L R+ L+ + R + P +T
Sbjct: 79 SNNKRIVSTKGK----SATEYKNEEYQRSERNKRLDADRKIRLSSSASREPYKNQPEKTC 134
Query: 505 HIPVQQPEKRKQKPSPEPSQDSPHSDKWPPGHPVKNLPQMRGPRPRPAGDSPRKTQWLNQ 564
+ + PE+R + P+P+ S+ ++ R A S + ++
Sbjct: 135 -VRKRDPERRAKSPTPDGSE------------------RIGLEVDRRASRSSQSSKEEVN 175
Query: 565 VESYIAEQRRGDRMRPQAPGRGWHGEEEVVAA-----------------AGQEGQVEGEE 607
E Y ++ G G EEE V ++G+ E EE
Sbjct: 176 SEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEE 235
Query: 608 EGEEEEEEEDMSEVFE 623
E EEEEEEE+ E +E
Sbjct: 236 EEEEEEEEEEEEEEYE 251
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 37.7 bits (86), Expect = 0.054
Identities = 55/202 (27%), Positives = 70/202 (34%), Gaps = 30/202 (14%)
Query: 416 EKQGLEQPGFEENLL------------EESQYGEVAEETPASNNQNARMLEGRQTPASTL 463
EK+G++ P NLL S +A+ P NAR R
Sbjct: 21 EKKGVDDPQLALNLLLFLPLAAGGRCRVPSGLRRLADPIPG----NARAGVARTEQRDHS 76
Query: 464 EQDATDYRLRSLRKLLAQPREGLLAPFSKRNSTASFPGRTSHIPVQQPEKRKQKPSPEPS 523
+ RL S + P L P S + A P + H P + P + Q P PS
Sbjct: 77 QSSPPCRRLASYSFWSSAPWRELTLPVSPADPAA--PPSSPHAPTRPPPQAVQ---PRPS 131
Query: 524 QDSPHSDKWPPGHPVKN------LPQMRGPRPRPA--GDSPRKTQWLNQVESYIAEQRRG 575
+ +P S+ PPG + LP P PRP GD Q S A Q
Sbjct: 132 EPTPGSEALPPGSLPEGEPRPYALPPRESPAPRPFRWGDPFSPAPPRPQPPSRPAAQPPS 191
Query: 576 -DRMRPQAPGRGWHGEEEVVAA 596
R P RG H VV A
Sbjct: 192 RPAFRSPRPVRGPHPRRAVVVA 213
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 37.7 bits (86), Expect = 0.054
Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 25/222 (11%)
Query: 424 GFEENLLEESQYGEVAEETPASNNQNARML-EGRQTPASTLEQDATD----------YRL 472
G E N ES + E+ ++ +++ +L E ++ PAS E+ A Y +
Sbjct: 50 GSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVYGV 109
Query: 473 RSLRKLLAQPREGLLAPFSKRNSTASFPGRTSHIPVQQPEKRKQKPSPEPSQDSPHSDKW 532
R + +P + + S + P R +++ EK KQ EPS+D
Sbjct: 110 RRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKQ----EPSEDEQEQGTS 165
Query: 533 PPGHPVKNLPQMRGPRPRPAGDSPR-----KTQWLNQVESYIAEQRRGDRMRPQAPGRGW 587
P + + R P PR PR KTQ + + +++ D P+ R
Sbjct: 166 AESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRR- 224
Query: 588 HGEEEVVAAAGQEGQVEGEE----EGEEEEEEEDMSEVFEYV 625
+ V + + + ++ GE +E++D SE E V
Sbjct: 225 RAAKNVSYKEDDDFETDSDDLIEMTGEGVDEQQDNSETIEKV 266
>gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2
[Homo sapiens]
Length = 501
Score = 37.7 bits (86), Expect = 0.054
Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 25/222 (11%)
Query: 424 GFEENLLEESQYGEVAEETPASNNQNARML-EGRQTPASTLEQDATD----------YRL 472
G E N ES + E+ ++ +++ +L E ++ PAS E+ A Y +
Sbjct: 50 GSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVYGV 109
Query: 473 RSLRKLLAQPREGLLAPFSKRNSTASFPGRTSHIPVQQPEKRKQKPSPEPSQDSPHSDKW 532
R + +P + + S + P R +++ EK KQ EPS+D
Sbjct: 110 RRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKQ----EPSEDEQEQGTS 165
Query: 533 PPGHPVKNLPQMRGPRPRPAGDSPR-----KTQWLNQVESYIAEQRRGDRMRPQAPGRGW 587
P + + R P PR PR KTQ + + +++ D P+ R
Sbjct: 166 AESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRR- 224
Query: 588 HGEEEVVAAAGQEGQVEGEE----EGEEEEEEEDMSEVFEYV 625
+ V + + + ++ GE +E++D SE E V
Sbjct: 225 RAAKNVSYKEDDDFETDSDDLIEMTGEGVDEQQDNSETIEKV 266
>gi|21735492 protein phosphatase 1, regulatory (inhibitor) subunit
1B isoform 1 [Homo sapiens]
Length = 204
Score = 37.0 bits (84), Expect = 0.093
Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 18/149 (12%)
Query: 489 PFSKRNSTASFPGRTSHIPVQQPEK-RKQKPSP----------EPSQD-SPHSDKWPPGH 536
P ++ S P S + +Q E R+++P+P P ++ SPH GH
Sbjct: 3 PKDRKKIQFSVPAPPSQLDPRQVEMIRRRRPTPAMLFRLSEHSSPEEEASPHQRASGEGH 62
Query: 537 PVKNLPQMRGPRPRPAGDSPRKTQWLNQVESYIAEQRRGDRMRPQAPGRGWHGEEEVVAA 596
+K+ RP P +P + + ++ + + GE +
Sbjct: 63 HLKS------KRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQASEEEDELGELRELGY 116
Query: 597 AGQEGQVEGEEEGEEEEEEEDMSEVFEYV 625
+E + E E++ EEEEEE+ +EV + +
Sbjct: 117 PREEDEEEEEDDEEEEEEEDSQAEVLKVI 145
>gi|31563526 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 3 [Homo sapiens]
Length = 644
Score = 37.0 bits (84), Expect = 0.093
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 582 APGRGWHG--EEEVVAAAGQEGQVEGEE-EGEEEEEEEDMSEVFEYVPVFDP 630
AP RG +G ++VVA AG E + E E+ E +EEEEE++ + Y P P
Sbjct: 390 APDRGVNGTRRDDVVAEAGNETENENEDNENDEEEEEDEDDDEGPYTPFDTP 441
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 36.6 bits (83), Expect = 0.12
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 500 PGRTSHIPVQQ-PEKRKQKPSPEPSQDSPHSDKWPPGHPVKNLPQMRGPRPRPAGDSPRK 558
P IP ++ PE+RK P P ++ P K P P K +P+ + P P
Sbjct: 9396 PPAVPEIPKKKVPEERK--PVPRKEEEVPPPPK-VPALPKKPVPEEKVAVPVPVAKKAPP 9452
Query: 559 TQWLNQVESYIAEQR--RGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEG------- 609
+ ++ + E+R +++ P R EV +A +E EEEG
Sbjct: 9453 PRAEVSKKTVVEEKRFVAEEKLSFAVPQRVEVTRHEV--SAEEEWSYSEEEEGVSISVYR 9510
Query: 610 EEEEEEEDMSEVFEYVPVFDP 630
EEE EEE+ +EV EY + +P
Sbjct: 9511 EEEREEEEEAEVTEYEVMEEP 9531
Score = 31.6 bits (70), Expect = 3.9
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 507 PVQQPEKRKQKPSPEPSQDSPHSDKWPPGHPVKNLPQMRGPRPRPAGDSPRKTQWLNQVE 566
P + PE K K PE P + PP K +P+ + P P ++P + +V
Sbjct: 10266 PPRVPEVIK-KAVPEAPTPVPKKVEAPPAKVSKKIPEEKVPVPVQKKEAPPAK--VPEVP 10322
Query: 567 SYIAEQR---RGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEG-------EEEGEEEEEEE 616
+ E++ P A GR EE+V A QE V+ E E EE EEE
Sbjct: 10323 KKVPEKKVLVPKKEAVPPAKGRTVL-EEKVSVAFRQEVVVKERLELEVVEAEVEEIPEEE 10381
Query: 617 DMSEVFEY 624
+ EV EY
Sbjct: 10382 EFHEVEEY 10389
Score = 31.2 bits (69), Expect = 5.1
Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 15/155 (9%)
Query: 482 PREGLLAPFSKRNSTASFPGRTSHIPVQQ-PEKRKQKPSPEPSQDSPHSDKWPPGHPVKN 540
P E + P K+ P + +P + PEK+ P+P+ + P P P K
Sbjct: 10013 PEEKVPVPVPKKVEAP--PAKVPEVPKKPVPEKKVPVPAPKKVEAPPAK---VPEVPKKL 10067
Query: 541 LPQMRGPRPRPA---GDSPRKTQWLNQVESYIAEQRRGDRMRPQ--APGRGWHGEEEVVA 595
+P+ + P P P P+ + V +A + + + + P EEE V
Sbjct: 10068 IPEEKKPTPVPKKVEAPPPKVPKKREPVPVPVALPQEEEVLFEEEIVPEEEVLPEEEEVL 10127
Query: 596 AAGQEGQVEGEE----EGEEEEEEEDMSEVFEYVP 626
+E E EE E E EEE++ EYVP
Sbjct: 10128 PEEEEVLPEEEEVLPEEEEIPPEEEEVPPEEEYVP 10162
>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
Length = 417
Score = 36.6 bits (83), Expect = 0.12
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 15/102 (14%)
Query: 510 QPEKRKQKPSPEPSQDSPHSDKWPPGHPVKNLPQMRGPRPRPAGDSPRKTQWLNQVESYI 569
+P +++Q ++S D+W K L + P+ +PAG +
Sbjct: 2 KPRQKEQDTRLRKLRESSEGDQWLENEKTKPLRPQQQPQCQPAGGTG------------- 48
Query: 570 AEQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEE 611
QRRG P A +G EE AAA Q ++ EE
Sbjct: 49 --QRRGSGSSPSADQQGAQDREEEAAAAPAADQQRAQDREEE 88
Score = 30.8 bits (68), Expect = 6.6
Identities = 43/163 (26%), Positives = 61/163 (37%), Gaps = 35/163 (21%)
Query: 437 EVAEETPASNNQNA--RMLEGRQTPASTLEQDATDYRLRSLRKLLAQPREGLLAPFSKRN 494
E A PA++ Q A R E P T T+ R R +L QP G +R
Sbjct: 69 EEAAAAPAADQQRAQDREEEAAAAPVPTSSGHRTEKRKRL--QLQCQPAGGT----GQRR 122
Query: 495 STASFPGRTSHIPVQQPEKRKQKPSPEPSQDSPHSDKWPPGHPVKNLPQMRGPRPRPAGD 554
+ S P Q+ + R+++ + P S GH + + + P+ RPAG
Sbjct: 123 GSRSSPSADQ----QRAQDREEEAAAAPVPTSR-------GHRTEKRKRQQ-PQRRPAGG 170
Query: 555 SPRKTQWLNQVESYIAEQRRGDRMRPQAPGRGWHGEEEVVAAA 597
+ QRRG P A +G EE AAA
Sbjct: 171 TG---------------QRRGSGSSPSADQQGAQDREEEAAAA 198
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,180,085
Number of Sequences: 37866
Number of extensions: 2185563
Number of successful extensions: 15903
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 214
Number of HSP's that attempted gapping in prelim test: 13072
Number of HSP's gapped (non-prelim): 1955
length of query: 998
length of database: 18,247,518
effective HSP length: 112
effective length of query: 886
effective length of database: 14,006,526
effective search space: 12409782036
effective search space used: 12409782036
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.