Guide to the Human Genome
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Name: CA6 Sequence: fasta or formatted (308aa) NCBI GI: 70167127
Description:

carbonic anhydrase VI precursor

Referenced in:

Carbonic Anhydrases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         17           2
 C cysteine            0.6          2           1
 D aspartate           4.2         13           1
 E glutamate           5.2         16           2
 F phenylalanine       3.2         10           1
 G glycine             6.2         19           2
 H histidine           5.8         18           1
 I isoleucine          4.5         14           1
 K lysine              3.2         10           1
 L leucine            10.1         31           3
 M methionine          2.3          7           1
 N asparagine          6.2         19           2
 P proline             4.5         14           2
 Q glutamine           5.8         18           2
 R arginine            4.9         15           2
 S serine              6.5         20           2
 T threonine           6.8         21           2
 V valine              6.5         20           2
 W tryptophan          1.6          5           1
 Y tyrosine            6.2         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carbonic anhydrase VI precursor 
CA14                  0.272   carbonic anhydrase XIV precursor 
CA9                   0.271   carbonic anhydrase IX precursor 
CA12                  0.261   carbonic anhydrase XII isoform 2 precursor 
CA12                  0.261   carbonic anhydrase XII isoform 1 precursor 
CA7                   0.211   carbonic anhydrase VII isoform 1 
CA2                   0.204   carbonic anhydrase II 
CA3                   0.201   carbonic anhydrase III 
CA13                  0.196   carbonic anhydrase XIII 
CA4                   0.178   carbonic anhydrase IV precursor 
CA1                   0.178   carbonic anhydrase I 
CA1                   0.178   carbonic anhydrase I 
CA1                   0.178   carbonic anhydrase I 
CA1                   0.178   carbonic anhydrase I 
CA8                   0.175   carbonic anhydrase VIII 
PTPRZ1                0.170   protein tyrosine phosphatase, receptor-type, zeta1 p...
CA5A                  0.170   carbonic anhydrase VA, mitochondrial precursor 
CA7                   0.165   carbonic anhydrase VII isoform 2 
PTPRG                 0.141   protein tyrosine phosphatase, receptor type, G prec...
CA5B                  0.139   carbonic anhydrase VB, mitochondrial precursor 
CA10                  0.126   carbonic anhydrase X 
CA10                  0.126   carbonic anhydrase X 
CA10                  0.126   carbonic anhydrase X 
CA11                  0.104   carbonic anhydrase XI precursor 
LOC402036             0.028   PREDICTED: similar to hCG1646661 
LOC402036             0.028   PREDICTED: similar to hCG1646661 
LOC402036             0.028   PREDICTED: similar to hCG1646661 
LOC645390             0.028   PREDICTED: similar to hCG1646661 
LOC440795             0.028   PREDICTED: similar to hCG1646661 
KRT34                 0.010   keratin 34 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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