Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC440795 Sequence: fasta or formatted (190aa) NCBI GI: 239746647
Description:

PREDICTED: similar to hCG1646661

Referenced in:

Carbonic Anhydrases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         11           2
 C cysteine            5.3         10           2
 D aspartate           2.6          5           1
 E glutamate           5.3         10           2
 F phenylalanine       3.7          7           1
 G glycine             5.3         10           2
 H histidine           3.7          7           1
 I isoleucine          2.1          4           1
 K lysine              2.1          4           1
 L leucine             8.4         16           2
 M methionine          4.2          8           1
 N asparagine          2.6          5           1
 P proline            10.5         20           2
 Q glutamine           3.2          6           1
 R arginine            6.8         13           1
 S serine              8.9         17           2
 T threonine           8.4         16           1
 V valine              6.3         12           2
 W tryptophan          3.7          7           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1646661 
LOC645390             0.977   PREDICTED: similar to hCG1646661 
LOC402036             0.933   PREDICTED: similar to hCG1646661 
LOC402036             0.933   PREDICTED: similar to hCG1646661 
LOC402036             0.933   PREDICTED: similar to hCG1646661 
CA12                  0.067   carbonic anhydrase XII isoform 2 precursor 
CA12                  0.067   carbonic anhydrase XII isoform 1 precursor 
PTPRG                 0.064   protein tyrosine phosphatase, receptor type, G prec...
PTPRZ1                0.057   protein tyrosine phosphatase, receptor-type, zeta1 p...
CA4                   0.057   carbonic anhydrase IV precursor 
CA14                  0.044   carbonic anhydrase XIV precursor 
CA6                   0.044   carbonic anhydrase VI precursor 
CA3                   0.044   carbonic anhydrase III 
CA9                   0.041   carbonic anhydrase IX precursor 
CA13                  0.039   carbonic anhydrase XIII 
CA10                  0.036   carbonic anhydrase X 
CA10                  0.036   carbonic anhydrase X 
CA10                  0.036   carbonic anhydrase X 
CA2                   0.031   carbonic anhydrase II 
CA7                   0.026   carbonic anhydrase VII isoform 2 
CA7                   0.026   carbonic anhydrase VII isoform 1 
CA5A                  0.026   carbonic anhydrase VA, mitochondrial precursor 
CA1                   0.021   carbonic anhydrase I 
CA1                   0.021   carbonic anhydrase I 
CA1                   0.021   carbonic anhydrase I 
CA1                   0.021   carbonic anhydrase I 
KRTAP2-2              0.021   keratin associated protein 2-2 
CA11                  0.021   carbonic anhydrase XI precursor 
KRTAP9-8              0.021   keratin associated protein 9.8 
LOC100288750          0.018   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press