Guide to the Human Genome
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Name: CA12 Sequence: fasta or formatted (354aa) NCBI GI: 4502515
Description:

carbonic anhydrase XII isoform 1 precursor

Referenced in:

Carbonic Anhydrases

Other entries for this name:
alt prot [343aa] carbonic anhydrase XII isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         24           3
 C cysteine            1.4          5           1
 D aspartate           3.7         13           2
 E glutamate           5.1         18           2
 F phenylalanine       3.7         13           1
 G glycine             6.2         22           2
 H histidine           4.2         15           1
 I isoleucine          5.1         18           2
 K lysine              4.8         17           2
 L leucine            11.6         41           3
 M methionine          1.7          6           1
 N asparagine          5.1         18           2
 P proline             6.2         22           2
 Q glutamine           5.1         18           1
 R arginine            3.4         12           2
 S serine              9.3         33           2
 T threonine           4.8         17           2
 V valine              6.2         22           4
 W tryptophan          1.4          5           1
 Y tyrosine            4.2         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carbonic anhydrase XII isoform 1 precursor 
CA12                  0.958   carbonic anhydrase XII isoform 2 precursor 
CA14                  0.347   carbonic anhydrase XIV precursor 
CA9                   0.252   carbonic anhydrase IX precursor 
CA6                   0.231   carbonic anhydrase VI precursor 
CA7                   0.205   carbonic anhydrase VII isoform 1 
CA1                   0.199   carbonic anhydrase I 
CA1                   0.199   carbonic anhydrase I 
CA1                   0.199   carbonic anhydrase I 
CA1                   0.199   carbonic anhydrase I 
CA13                  0.196   carbonic anhydrase XIII 
PTPRZ1                0.191   protein tyrosine phosphatase, receptor-type, zeta1 p...
PTPRG                 0.189   protein tyrosine phosphatase, receptor type, G prec...
CA2                   0.185   carbonic anhydrase II 
CA3                   0.179   carbonic anhydrase III 
CA8                   0.168   carbonic anhydrase VIII 
CA4                   0.166   carbonic anhydrase IV precursor 
CA7                   0.163   carbonic anhydrase VII isoform 2 
CA5A                  0.156   carbonic anhydrase VA, mitochondrial precursor 
CA10                  0.142   carbonic anhydrase X 
CA10                  0.142   carbonic anhydrase X 
CA10                  0.142   carbonic anhydrase X 
CA5B                  0.139   carbonic anhydrase VB, mitochondrial precursor 
CA11                  0.103   carbonic anhydrase XI precursor 
LOC440795             0.037   PREDICTED: similar to hCG1646661 
LOC645390             0.036   PREDICTED: similar to hCG1646661 
LOC402036             0.036   PREDICTED: similar to hCG1646661 
LOC402036             0.036   PREDICTED: similar to hCG1646661 
LOC402036             0.036   PREDICTED: similar to hCG1646661 
LAMP2                 0.007   lysosomal-associated membrane protein 2 isoform B pre...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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