Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CA3 Sequence: fasta or formatted (260aa) NCBI GI: 4885099
Description:

carbonic anhydrase III

Referenced in:

Carbonic Anhydrases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         14           2
 C cysteine            1.9          5           1
 D aspartate           6.2         16           2
 E glutamate           5.8         15           2
 F phenylalanine       4.6         12           1
 G glycine             6.9         18           2
 H histidine           4.6         12           1
 I isoleucine          3.8         10           1
 K lysine              6.9         18           1
 L leucine             8.5         22           3
 M methionine          1.5          4           1
 N asparagine          4.6         12           2
 P proline             8.1         21           2
 Q glutamine           3.1          8           1
 R arginine            4.6         12           1
 S serine              7.3         19           2
 T threonine           4.6         12           2
 V valine              5.4         14           2
 W tryptophan          3.1          8           1
 Y tyrosine            3.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carbonic anhydrase III 
CA2                   0.569   carbonic anhydrase II 
CA13                  0.549   carbonic anhydrase XIII 
CA1                   0.519   carbonic anhydrase I 
CA1                   0.519   carbonic anhydrase I 
CA1                   0.519   carbonic anhydrase I 
CA1                   0.519   carbonic anhydrase I 
CA7                   0.493   carbonic anhydrase VII isoform 1 
CA5B                  0.410   carbonic anhydrase VB, mitochondrial precursor 
CA7                   0.391   carbonic anhydrase VII isoform 2 
CA5A                  0.391   carbonic anhydrase VA, mitochondrial precursor 
CA8                   0.288   carbonic anhydrase VIII 
CA14                  0.243   carbonic anhydrase XIV precursor 
CA12                  0.234   carbonic anhydrase XII isoform 2 precursor 
CA12                  0.234   carbonic anhydrase XII isoform 1 precursor 
CA6                   0.232   carbonic anhydrase VI precursor 
CA10                  0.204   carbonic anhydrase X 
CA10                  0.204   carbonic anhydrase X 
CA10                  0.204   carbonic anhydrase X 
CA9                   0.197   carbonic anhydrase IX precursor 
CA4                   0.178   carbonic anhydrase IV precursor 
CA11                  0.178   carbonic anhydrase XI precursor 
PTPRG                 0.176   protein tyrosine phosphatase, receptor type, G prec...
PTPRZ1                0.139   protein tyrosine phosphatase, receptor-type, zeta1 p...
LOC402036             0.036   PREDICTED: similar to hCG1646661 
LOC402036             0.036   PREDICTED: similar to hCG1646661 
LOC402036             0.036   PREDICTED: similar to hCG1646661 
LOC645390             0.032   PREDICTED: similar to hCG1646661 
LOC440795             0.032   PREDICTED: similar to hCG1646661 
TOM1L2                0.019   target of myb1-like 2 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press