Guide to the Human Genome
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Name: LOC402036 Sequence: fasta or formatted (190aa) NCBI GI: 239752124
Description:

PREDICTED: similar to hCG1646661

Referenced in:

Carbonic Anhydrases

Other entries for this name:
alt mRNA [190aa] PREDICTED: similar to hCG1646661
alt mRNA [190aa] PREDICTED: similar to hCG1646661
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         11           2
 C cysteine            5.3         10           2
 D aspartate           2.6          5           1
 E glutamate           5.3         10           2
 F phenylalanine       3.7          7           1
 G glycine             5.3         10           2
 H histidine           3.7          7           1
 I isoleucine          2.1          4           1
 K lysine              2.1          4           1
 L leucine             7.9         15           1
 M methionine          3.7          7           1
 N asparagine          2.6          5           1
 P proline            11.1         21           2
 Q glutamine           3.2          6           1
 R arginine            5.8         11           1
 S serine              9.5         18           2
 T threonine           8.4         16           1
 V valine              6.8         13           2
 W tryptophan          3.7          7           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1646661 
LOC402036             1.000   PREDICTED: similar to hCG1646661 
LOC402036             1.000   PREDICTED: similar to hCG1646661 
LOC645390             0.941   PREDICTED: similar to hCG1646661 
LOC440795             0.931   PREDICTED: similar to hCG1646661 
PTPRG                 0.064   protein tyrosine phosphatase, receptor type, G prec...
CA12                  0.064   carbonic anhydrase XII isoform 2 precursor 
CA12                  0.064   carbonic anhydrase XII isoform 1 precursor 
CA4                   0.056   carbonic anhydrase IV precursor 
CA14                  0.054   carbonic anhydrase XIV precursor 
PTPRZ1                0.054   protein tyrosine phosphatase, receptor-type, zeta1 p...
CA3                   0.049   carbonic anhydrase III 
CA6                   0.044   carbonic anhydrase VI precursor 
CA13                  0.044   carbonic anhydrase XIII 
CA9                   0.041   carbonic anhydrase IX precursor 
CA10                  0.038   carbonic anhydrase X 
CA10                  0.038   carbonic anhydrase X 
CA10                  0.038   carbonic anhydrase X 
CA2                   0.036   carbonic anhydrase II 
CA5A                  0.031   carbonic anhydrase VA, mitochondrial precursor 
CA7                   0.031   carbonic anhydrase VII isoform 2 
CA7                   0.031   carbonic anhydrase VII isoform 1 
CA1                   0.028   carbonic anhydrase I 
CA1                   0.028   carbonic anhydrase I 
CA1                   0.028   carbonic anhydrase I 
CA1                   0.028   carbonic anhydrase I 
CA5B                  0.026   carbonic anhydrase VB, mitochondrial precursor 
CA11                  0.026   carbonic anhydrase XI precursor 
CA8                   0.018   carbonic anhydrase VIII 
LOC100288750          0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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