Guide to the Human Genome
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Name: CA8 Sequence: fasta or formatted (290aa) NCBI GI: 22027500
Description:

carbonic anhydrase VIII

Referenced in:

Carbonic Anhydrases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         12           2
 C cysteine            1.7          5           1
 D aspartate           5.2         15           1
 E glutamate          11.0         32           6
 F phenylalanine       4.8         14           1
 G glycine             7.9         23           2
 H histidine           3.1          9           1
 I isoleucine          6.6         19           2
 K lysine              3.8         11           1
 L leucine             9.7         28           2
 M methionine          0.7          2           1
 N asparagine          3.8         11           1
 P proline             6.2         18           2
 Q glutamine           3.8         11           1
 R arginine            5.2         15           2
 S serine              5.5         16           1
 T threonine           4.5         13           1
 V valine              7.2         21           2
 W tryptophan          2.1          6           1
 Y tyrosine            3.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carbonic anhydrase VIII 
CA7                   0.327   carbonic anhydrase VII isoform 1 
CA2                   0.303   carbonic anhydrase II 
CA1                   0.296   carbonic anhydrase I 
CA1                   0.296   carbonic anhydrase I 
CA1                   0.296   carbonic anhydrase I 
CA1                   0.296   carbonic anhydrase I 
CA13                  0.279   carbonic anhydrase XIII 
CA5B                  0.275   carbonic anhydrase VB, mitochondrial precursor 
CA7                   0.268   carbonic anhydrase VII isoform 2 
CA3                   0.266   carbonic anhydrase III 
CA5A                  0.265   carbonic anhydrase VA, mitochondrial precursor 
CA9                   0.225   carbonic anhydrase IX precursor 
CA12                  0.202   carbonic anhydrase XII isoform 2 precursor 
CA12                  0.202   carbonic anhydrase XII isoform 1 precursor 
CA14                  0.192   carbonic anhydrase XIV precursor 
CA10                  0.189   carbonic anhydrase X 
CA10                  0.189   carbonic anhydrase X 
CA10                  0.189   carbonic anhydrase X 
CA6                   0.187   carbonic anhydrase VI precursor 
PTPRG                 0.175   protein tyrosine phosphatase, receptor type, G prec...
CA11                  0.166   carbonic anhydrase XI precursor 
CA4                   0.145   carbonic anhydrase IV precursor 
PTPRZ1                0.144   protein tyrosine phosphatase, receptor-type, zeta1 p...
SH3BP5                0.016   SH3-domain binding protein 5 (BTK-associated) isofo...
RYR1                  0.014   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.014   skeletal muscle ryanodine receptor isoform 1 
LOC100294358          0.012   PREDICTED: hypothetical protein 
PPARGC1B              0.012   peroxisome proliferator-activated receptor gamma, co...
LOC402036             0.012   PREDICTED: similar to hCG1646661 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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