Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CA7 Sequence: fasta or formatted (264aa) NCBI GI: 4885101
Description:

carbonic anhydrase VII isoform 1

Referenced in:

Carbonic Anhydrases

Other entries for this name:
alt prot [208aa] carbonic anhydrase VII isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         13           2
 C cysteine            1.5          4           1
 D aspartate           5.3         14           2
 E glutamate           4.9         13           1
 F phenylalanine       4.9         13           1
 G glycine             8.0         21           2
 H histidine           5.3         14           2
 I isoleucine          3.4          9           2
 K lysine              4.9         13           2
 L leucine             8.0         21           2
 M methionine          2.3          6           1
 N asparagine          3.4          9           2
 P proline             7.2         19           2
 Q glutamine           3.8         10           1
 R arginine            4.9         13           1
 S serine              9.8         26           2
 T threonine           5.3         14           2
 V valine              6.4         17           2
 W tryptophan          2.3          6           1
 Y tyrosine            3.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carbonic anhydrase VII isoform 1 
CA7                   0.772   carbonic anhydrase VII isoform 2 
CA2                   0.541   carbonic anhydrase II 
CA13                  0.513   carbonic anhydrase XIII 
CA1                   0.496   carbonic anhydrase I 
CA1                   0.496   carbonic anhydrase I 
CA1                   0.496   carbonic anhydrase I 
CA1                   0.496   carbonic anhydrase I 
CA3                   0.493   carbonic anhydrase III 
CA5B                  0.474   carbonic anhydrase VB, mitochondrial precursor 
CA5A                  0.446   carbonic anhydrase VA, mitochondrial precursor 
CA8                   0.354   carbonic anhydrase VIII 
CA12                  0.268   carbonic anhydrase XII isoform 2 precursor 
CA12                  0.268   carbonic anhydrase XII isoform 1 precursor 
CA14                  0.247   carbonic anhydrase XIV precursor 
CA6                   0.243   carbonic anhydrase VI precursor 
CA9                   0.243   carbonic anhydrase IX precursor 
CA10                  0.228   carbonic anhydrase X 
CA10                  0.228   carbonic anhydrase X 
CA10                  0.228   carbonic anhydrase X 
CA4                   0.197   carbonic anhydrase IV precursor 
PTPRG                 0.193   protein tyrosine phosphatase, receptor type, G prec...
CA11                  0.176   carbonic anhydrase XI precursor 
PTPRZ1                0.176   protein tyrosine phosphatase, receptor-type, zeta1 p...
LOC402036             0.022   PREDICTED: similar to hCG1646661 
LOC402036             0.022   PREDICTED: similar to hCG1646661 
LOC402036             0.022   PREDICTED: similar to hCG1646661 
LOC440795             0.019   PREDICTED: similar to hCG1646661 
LOC645390             0.019   PREDICTED: similar to hCG1646661 
MUC12                 0.013   PREDICTED: mucin 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press