Guide to the Human Genome
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Name: CA5A Sequence: fasta or formatted (305aa) NCBI GI: 4502521
Description:

carbonic anhydrase VA, mitochondrial precursor

Referenced in:

Carbonic Anhydrases
Mitochondria

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         22           2
 C cysteine            1.3          4           1
 D aspartate           3.0          9           2
 E glutamate           5.9         18           3
 F phenylalanine       3.6         11           1
 G glycine             6.2         19           2
 H histidine           3.6         11           2
 I isoleucine          3.0          9           2
 K lysine              3.6         11           1
 L leucine             9.5         29           2
 M methionine          2.3          7           2
 N asparagine          4.6         14           2
 P proline             6.6         20           2
 Q glutamine           4.9         15           1
 R arginine            5.2         16           1
 S serine              7.9         24           1
 T threonine           6.6         20           2
 V valine              6.9         21           2
 W tryptophan          4.6         14           1
 Y tyrosine            3.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carbonic anhydrase VA, mitochondrial precursor 
CA5B                  0.585   carbonic anhydrase VB, mitochondrial precursor 
CA2                   0.384   carbonic anhydrase II 
CA7                   0.383   carbonic anhydrase VII isoform 1 
CA13                  0.368   carbonic anhydrase XIII 
CA1                   0.355   carbonic anhydrase I 
CA1                   0.355   carbonic anhydrase I 
CA1                   0.355   carbonic anhydrase I 
CA1                   0.355   carbonic anhydrase I 
CA3                   0.336   carbonic anhydrase III 
CA7                   0.328   carbonic anhydrase VII isoform 2 
CA8                   0.246   carbonic anhydrase VIII 
CA14                  0.193   carbonic anhydrase XIV precursor 
CA10                  0.183   carbonic anhydrase X 
CA10                  0.183   carbonic anhydrase X 
CA10                  0.183   carbonic anhydrase X 
CA12                  0.175   carbonic anhydrase XII isoform 2 precursor 
CA12                  0.175   carbonic anhydrase XII isoform 1 precursor 
CA6                   0.169   carbonic anhydrase VI precursor 
CA11                  0.164   carbonic anhydrase XI precursor 
CA9                   0.161   carbonic anhydrase IX precursor 
PTPRZ1                0.143   protein tyrosine phosphatase, receptor-type, zeta1 p...
CA4                   0.133   carbonic anhydrase IV precursor 
PTPRG                 0.127   protein tyrosine phosphatase, receptor type, G prec...
LOC402036             0.019   PREDICTED: similar to hCG1646661 
LOC402036             0.019   PREDICTED: similar to hCG1646661 
LOC402036             0.019   PREDICTED: similar to hCG1646661 
LOC440795             0.016   PREDICTED: similar to hCG1646661 
LOC645390             0.016   PREDICTED: similar to hCG1646661 
TECPR1                0.010   tectonin beta-propeller repeat containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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