Guide to the Human Genome
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Name: CA13 Sequence: fasta or formatted (262aa) NCBI GI: 38348436
Description:

carbonic anhydrase XIII

Referenced in:

Carbonic Anhydrases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         14           3
 C cysteine            0.4          1           1
 D aspartate           6.1         16           2
 E glutamate           5.3         14           1
 F phenylalanine       4.2         11           2
 G glycine             6.5         17           2
 H histidine           4.6         12           1
 I isoleucine          5.3         14           2
 K lysine              6.1         16           1
 L leucine             9.9         26           2
 M methionine          0.4          1           1
 N asparagine          3.4          9           1
 P proline             6.9         18           2
 Q glutamine           4.2         11           2
 R arginine            4.2         11           1
 S serine             11.1         29           2
 T threonine           4.2         11           1
 V valine              6.1         16           2
 W tryptophan          2.7          7           1
 Y tyrosine            3.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carbonic anhydrase XIII 
CA1                   0.608   carbonic anhydrase I 
CA1                   0.608   carbonic anhydrase I 
CA1                   0.608   carbonic anhydrase I 
CA1                   0.608   carbonic anhydrase I 
CA2                   0.593   carbonic anhydrase II 
CA3                   0.566   carbonic anhydrase III 
CA7                   0.529   carbonic anhydrase VII isoform 1 
CA5B                  0.467   carbonic anhydrase VB, mitochondrial precursor 
CA5A                  0.442   carbonic anhydrase VA, mitochondrial precursor 
CA7                   0.427   carbonic anhydrase VII isoform 2 
CA8                   0.311   carbonic anhydrase VIII 
CA12                  0.264   carbonic anhydrase XII isoform 2 precursor 
CA12                  0.264   carbonic anhydrase XII isoform 1 precursor 
CA14                  0.264   carbonic anhydrase XIV precursor 
CA6                   0.234   carbonic anhydrase VI precursor 
CA9                   0.228   carbonic anhydrase IX precursor 
CA10                  0.224   carbonic anhydrase X 
CA10                  0.224   carbonic anhydrase X 
CA10                  0.224   carbonic anhydrase X 
CA11                  0.201   carbonic anhydrase XI precursor 
CA4                   0.185   carbonic anhydrase IV precursor 
PTPRZ1                0.180   protein tyrosine phosphatase, receptor-type, zeta1 p...
PTPRG                 0.180   protein tyrosine phosphatase, receptor type, G prec...
LOC402036             0.033   PREDICTED: similar to hCG1646661 
LOC402036             0.033   PREDICTED: similar to hCG1646661 
LOC402036             0.033   PREDICTED: similar to hCG1646661 
LOC645390             0.029   PREDICTED: similar to hCG1646661 
LOC440795             0.029   PREDICTED: similar to hCG1646661 
MYEF2                 0.014   myelin expression factor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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