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Search of human proteins with 13899219
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13899219 GABA(A) receptor-associated protein like 1 [Homo
sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13899219 GABA(A) receptor-associated protein like 1 [Homo sap... 245 6e-66
gi|6005764 GABA(A) receptor-associated protein [Homo sapiens] 216 4e-57
gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo sapi... 148 1e-36
gi|51972260 microtubule-associated protein 1 light chain 3 gamma... 92 7e-20
gi|14210522 microtubule-associated protein 1 light chain 3 alpha... 81 2e-16
gi|12383056 microtubule-associated proteins 1A/1B light chain 3 ... 78 2e-15
gi|31563518 microtubule-associated protein 1 light chain 3 alpha... 77 2e-15
gi|148277548 microtubule-associated protein 1 light chain 3 beta... 74 2e-14
gi|169183885 PREDICTED: similar to microtubule-associated protei... 63 4e-11
gi|169179756 PREDICTED: similar to microtubule-associated protei... 63 4e-11
gi|169180155 PREDICTED: similar to microtubule-associated protei... 63 4e-11
gi|239755918 PREDICTED: similar to microtubule-associated protei... 51 2e-07
gi|239750436 PREDICTED: similar to microtubule-associated protei... 51 2e-07
gi|239744738 PREDICTED: similar to microtubule-associated protei... 51 2e-07
gi|46877068 AMP-activated protein kinase alpha 2 catalytic subun... 30 0.31
gi|110349719 titin isoform N2-A [Homo sapiens] 30 0.53
gi|33186887 glutathione peroxidase 6 [Homo sapiens] 29 0.70
gi|32483410 vitamin D-binding protein precursor [Homo sapiens] 28 1.6
gi|38261969 APG12 autophagy 12-like [Homo sapiens] 28 2.0
gi|115529449 upstream binding transcription factor, RNA polymera... 27 2.6
gi|115529451 upstream binding transcription factor, RNA polymera... 27 2.6
gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo sap... 27 2.6
gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo sap... 27 2.6
gi|59709758 centromere protein P [Homo sapiens] 27 2.6
gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens] 27 3.5
gi|7657671 upstream binding transcription factor, RNA polymerase... 27 4.5
gi|4505569 cyclin-dependent kinase-like 2 [Homo sapiens] 27 4.5
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo... 26 5.9
gi|14249254 EF-hand calcium binding domain 4B isoform c [Homo sa... 26 7.7
gi|222418793 EF-hand calcium binding domain 4B isoform b [Homo s... 26 7.7
>gi|13899219 GABA(A) receptor-associated protein like 1 [Homo
sapiens]
Length = 117
Score = 245 bits (625), Expect = 6e-66
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 60
MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
Sbjct: 1 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 60
Query: 61 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK 117
YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
Sbjct: 61 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK 117
>gi|6005764 GABA(A) receptor-associated protein [Homo sapiens]
Length = 117
Score = 216 bits (549), Expect = 4e-57
Identities = 101/116 (87%), Positives = 110/116 (94%)
Query: 1 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 60
MKF YKE+HPFE R+ EGEKIRKKYPDRVPVIVEKAPKAR+ DLDK+KYLVPSDLTVGQF
Sbjct: 1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 61 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
YFLIRKRIHLR EDALFFFVNN IPPTSATMGQLY+++HEED+FLY+AYSDESVYG
Sbjct: 61 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo
sapiens]
Length = 117
Score = 148 bits (373), Expect = 1e-36
Identities = 71/116 (61%), Positives = 88/116 (75%)
Query: 1 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 60
MK+ +KEDH E+R E KIR KYPDRVPVIVEK +++ D+DKRKYLVPSD+TV QF
Sbjct: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
Query: 61 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
++IRKRI L E A+F FV+ T+P +S TMGQLYE +ED FLYVAYS E+ +G
Sbjct: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>gi|51972260 microtubule-associated protein 1 light chain 3 gamma
[Homo sapiens]
Length = 147
Score = 92.4 bits (228), Expect = 7e-20
Identities = 45/114 (39%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Query: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKAR-VPDLDKRKYLVPSDLTVGQFYFL 63
+K+ R++E IR K+P+++PV+VE+ P+ +P LDK K+LVP +LT+ QF +
Sbjct: 13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSI 72
Query: 64 IRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
IR R+ LR +A + VNN ++ SATM ++Y D +ED F+Y+ Y+ + +G
Sbjct: 73 IRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
>gi|14210522 microtubule-associated protein 1 light chain 3 alpha
isoform a [Homo sapiens]
Length = 121
Score = 80.9 bits (198), Expect = 2e-16
Identities = 39/114 (34%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63
+K+ F R KE ++IR ++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 66
Query: 64 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
IR+R+ L P A F VN +++ S + +YE +ED FLY+ Y+ + +G
Sbjct: 67 IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
>gi|12383056 microtubule-associated proteins 1A/1B light chain 3
[Homo sapiens]
Length = 125
Score = 77.8 bits (190), Expect = 2e-15
Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
Query: 64 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
IR+R+ L A F VN +++ S + ++YE +ED FLY+ Y+ + +G
Sbjct: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
>gi|31563518 microtubule-associated protein 1 light chain 3 alpha
isoform b [Homo sapiens]
Length = 125
Score = 77.4 bits (189), Expect = 2e-15
Identities = 37/105 (35%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 14 RKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRP 72
R KE ++IR ++P ++PVI+E+ + ++P LDK K+LVP + + + +IR+R+ L P
Sbjct: 20 RCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNP 79
Query: 73 EDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
A F VN +++ S + +YE +ED FLY+ Y+ + +G
Sbjct: 80 TQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 124
>gi|148277548 microtubule-associated protein 1 light chain 3 beta 2
[Homo sapiens]
Length = 125
Score = 74.3 bits (181), Expect = 2e-14
Identities = 36/114 (31%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
Query: 64 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
IR+R+ L A F VN +++ S + ++YE +ED FLY+ + + +G
Sbjct: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
>gi|169183885 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 157
Score = 63.2 bits (152), Expect = 4e-11
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPS--DLTVGQFY 61
+K+ F+ R + I++++P + PVI E+ + ++P LDK K+LVP D+ + +
Sbjct: 38 FKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMSELI 96
Query: 62 FLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
+IR+R+ L A VN +++ S + ++YE +ED FLY+ Y+ + YG
Sbjct: 97 KIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYG 152
>gi|169179756 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 63.2 bits (152), Expect = 4e-11
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPS--DLTVGQFY 61
+K+ F+ R + I++++P + PVI E+ + ++P LDK K+LVP D+ + +
Sbjct: 258 FKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMSELI 316
Query: 62 FLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
+IR+R+ L A VN +++ S + ++YE +ED FLY+ Y+ + YG
Sbjct: 317 KIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYG 372
>gi|169180155 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 63.2 bits (152), Expect = 4e-11
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPS--DLTVGQFY 61
+K+ F+ R + I++++P + PVI E+ + ++P LDK K+LVP D+ + +
Sbjct: 258 FKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMSELI 316
Query: 62 FLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
+IR+R+ L A VN +++ S + ++YE +ED FLY+ Y+ + YG
Sbjct: 317 KIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYG 372
>gi|239755918 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 51.2 bits (121), Expect = 2e-07
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 41 VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNH 99
+P LDK K+LVP + + + +I++ + L A F VN + S ++YE
Sbjct: 22 LPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEK 81
Query: 100 EEDYFLYVAYSDESVYGK 117
+ED FLY Y+ + ++G+
Sbjct: 82 DEDGFLYTVYASQEMFGR 99
>gi|239750436 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 51.2 bits (121), Expect = 2e-07
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 41 VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNH 99
+P LDK K+LVP + + + +I++ + L A F VN + S ++YE
Sbjct: 22 LPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEK 81
Query: 100 EEDYFLYVAYSDESVYGK 117
+ED FLY Y+ + ++G+
Sbjct: 82 DEDGFLYTVYASQEMFGR 99
>gi|239744738 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 105
Score = 51.2 bits (121), Expect = 2e-07
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 41 VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNH 99
+P LDK K+LVP + + + +I++ + L A F VN + S ++YE
Sbjct: 22 LPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEK 81
Query: 100 EEDYFLYVAYSDESVYGK 117
+ED FLY Y+ + ++G+
Sbjct: 82 DEDGFLYTVYASQEMFGR 99
>gi|46877068 AMP-activated protein kinase alpha 2 catalytic subunit
[Homo sapiens]
Length = 552
Score = 30.4 bits (67), Expect = 0.31
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 23 KKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDAL 76
K +P+R+P ++ +PKAR P LD P L V + + + R +P D +
Sbjct: 364 KPHPERMPPLIADSPKARCP-LDALNTTKPKSLAVKKAKWHLGIRSQSKPYDIM 416
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 29.6 bits (65), Expect = 0.53
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 7/40 (17%)
Query: 20 KIRKKYPD-RVPVIVEK--APKARVPDLDK----RKYLVP 52
K+ KK P+ +VPV V+K AP A+VP++ K +K LVP
Sbjct: 10294 KVSKKIPEEKVPVPVQKKEAPPAKVPEVPKKVPEKKVLVP 10333
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 20 KIRKKYPDRVPVIV---EKAPKARVPDLDKR 47
++ KK ++VPV++ EK P A+VP++ K+
Sbjct: 9980 EVPKKPEEKVPVLIPKKEKPPPAKVPEVPKK 10010
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 7 EDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKR 47
E P E +++ +KI K ++P +E+ P A+VP+ K+
Sbjct: 9548 EAEPAEVTERQEKKIVLK--PKIPAKIEEPPPAKVPEAPKK 9586
>gi|33186887 glutathione peroxidase 6 [Homo sapiens]
Length = 221
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 48 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMG 92
KY+ P V F + ++ E +F F+ N+ PPTS +G
Sbjct: 120 KYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLG 164
>gi|32483410 vitamin D-binding protein precursor [Homo sapiens]
Length = 474
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEK 35
Y E+ EY+KK E+++ K PD P + K
Sbjct: 410 YSENTFTEYKKKLAERLKAKLPDATPTELAK 440
>gi|38261969 APG12 autophagy 12-like [Homo sapiens]
Length = 187
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 42 PDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPT-SATMGQLYE 96
P + +K+ V T+ I+K + L + LF +VN + P+ +G LYE
Sbjct: 113 PIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYE 168
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFY 61
K +Y +D F+ K+E E+ ++ + P +++ A K+ +P+ K T Q +
Sbjct: 158 KMKYIQD--FQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPK---------TPQQLW 206
Query: 62 FLIRKRIHL--RPEDAL 76
+ K+++L RP++ +
Sbjct: 207 YTHEKKVYLKVRPDEIM 223
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFY 61
K +Y +D F+ K+E E+ ++ + P +++ A K+ +P+ K T Q +
Sbjct: 158 KMKYIQD--FQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPK---------TPQQLW 206
Query: 62 FLIRKRIHL--RPEDAL 76
+ K+++L RP++ +
Sbjct: 207 YTHEKKVYLKVRPDEIM 223
>gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo
sapiens]
Length = 1094
Score = 27.3 bits (59), Expect = 2.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 23 KKYPDRVPVIVEKAPKARVPDLDKRKYLV 51
+KY R+P +V++ K + DLD +Y++
Sbjct: 892 EKYNIRIPELVQRIEKCHIEDLDFAEYIL 920
>gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo
sapiens]
Length = 1043
Score = 27.3 bits (59), Expect = 2.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 23 KKYPDRVPVIVEKAPKARVPDLDKRKYLV 51
+KY R+P +V++ K + DLD +Y++
Sbjct: 841 EKYNIRIPELVQRIEKCHIEDLDFAEYIL 869
>gi|59709758 centromere protein P [Homo sapiens]
Length = 288
Score = 27.3 bits (59), Expect = 2.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 11 FEYRKKEGEKIRKKYPDRV 29
FEYRK+ + +++KYPD V
Sbjct: 177 FEYRKRTFKHLKEKYPDAV 195
>gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens]
Length = 226
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 48 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMG 92
KY+ P V F + ++ E + F+ N+ PPTS +G
Sbjct: 120 KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLG 164
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFY 61
K +Y +D F+ K+E E+ ++ + P +++ A K+ +P+ K T Q +
Sbjct: 158 KMKYIQD--FQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPK---------TPQQLW 206
Query: 62 FLIRKRIHLR 71
+ K+++L+
Sbjct: 207 YTHEKKVYLK 216
>gi|4505569 cyclin-dependent kinase-like 2 [Homo sapiens]
Length = 493
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 16 KEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKY 49
KE E + ++YP V+++ A K D DKR +
Sbjct: 244 KEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPF 277
>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
sapiens]
Length = 1483
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 7 EDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLT 56
E+ EY KK+ E+++KK ++ E+ K + L+K+K +LT
Sbjct: 540 EEQRKEYLKKKREELKKKLKEKAK---ERREKEMLERLEKQKRYEDQELT 586
>gi|14249254 EF-hand calcium binding domain 4B isoform c [Homo
sapiens]
Length = 395
Score = 25.8 bits (55), Expect = 7.7
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 19/72 (26%)
Query: 43 DLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEED 102
D D YL P + T G +F FF NN P+ G+ HEE
Sbjct: 97 DADGNGYLTPQEFTTGFSHF--------------FFSQNN---PSQEDAGEQVAQRHEEK 139
Query: 103 YFLYVAYSDESV 114
+Y++ DE +
Sbjct: 140 --VYLSRGDEDL 149
>gi|222418793 EF-hand calcium binding domain 4B isoform b [Homo
sapiens]
Length = 462
Score = 25.8 bits (55), Expect = 7.7
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 19/72 (26%)
Query: 43 DLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEED 102
D D YL P + T G +F FF NN P+ G+ HEE
Sbjct: 97 DADGNGYLTPQEFTTGFSHF--------------FFSQNN---PSQEDAGEQVAQRHEEK 139
Query: 103 YFLYVAYSDESV 114
+Y++ DE +
Sbjct: 140 --VYLSRGDEDL 149
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.141 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,830,828
Number of Sequences: 37866
Number of extensions: 203296
Number of successful extensions: 558
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 41
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.