MAP1LC3A 25629

Name: MAP1LC3A	Sequence: fasta or formatted (125aa)		NCBI GI: 31563518
Description: microtubule-associated protein 1 light chain 3 alpha isoform b		Referenced in: Additional Membrane Functions Tubulins and Microtubules
Other entries for this name: alt prot [121aa] microtubule-associated protein 1 light chain 3 alpha isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.8 6 2 C cysteine 1.6 2 1 D aspartate 6.4 8 1 E glutamate 6.4 8 1 F phenylalanine 6.4 8 2 G glycine 3.2 4 1 H histidine 2.4 3 1 I isoleucine 6.4 8 2 K lysine 8.0 10 1 L leucine 7.2 9 2 M methionine 4.0 5 1 N asparagine 2.4 3 1 P proline 6.4 8 1 Q glutamine 7.2 9 2 R arginine 5.6 7 3 S serine 6.4 8 2 T threonine 3.2 4 1 V valine 8.8 11 1 W tryptophan 0.0 0 0 Y tyrosine 3.2 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 microtubule-associated protein 1 light chain 3 alpha... MAP1LC3A 0.846 microtubule-associated protein 1 light chain 3 alpha... MAP1LC3B 0.702 microtubule-associated proteins 1A/1B light chain 3 ... MAP1LC3B2 0.689 microtubule-associated protein 1 light chain 3 beta... LOC392288 0.601 PREDICTED: similar to microtubule-associated protei... LOC392288 0.601 PREDICTED: similar to microtubule-associated protei... LOC392288 0.601 PREDICTED: similar to microtubule-associated protei... LOC652191 0.478 PREDICTED: similar to microtubule-associated protei... LOC652191 0.478 PREDICTED: similar to microtubule-associated protei... LOC652191 0.478 PREDICTED: similar to microtubule-associated protei... MAP1LC3C 0.434 microtubule-associated protein 1 light chain 3 gamma... GABARAPL2 0.303 GABA(A) receptor-associated protein-like 2 GABARAPL1 0.228 GABA(A) receptor-associated protein like 1 GABARAP 0.189 GABA(A) receptor-associated protein ATG12 0.031 APG12 autophagy 12-like YAP1 0.018 Yes-associated protein 1, 65kDa isoform 1 COPE 0.009 epsilon subunit of coatomer protein complex isoform ... COPE 0.009 epsilon subunit of coatomer protein complex isoform ... COPE 0.009 epsilon subunit of coatomer protein complex isoform ... AMIGO1 0.009 AMIGO protein CENPF 0.009 centromere protein F ALG5 0.004 dolichyl-phosphate beta-glucosyltransferase isoform 1... MCTP1 0.004 multiple C2 domains, transmembrane 1 isoform S [Homo... MCTP1 0.004 multiple C2 domains, transmembrane 1 isoform L [Hom... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.