Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MAP1LC3A Sequence: fasta or formatted (121aa) NCBI GI: 14210522
Description:

microtubule-associated protein 1 light chain 3 alpha isoform a

Referenced in:

Additional Membrane Functions
Tubulins and Microtubules

Other entries for this name:
alt prot [125aa] microtubule-associated protein 1 light chain 3 alpha isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3          4           1
 C cysteine            0.8          1           1
 D aspartate           6.6          8           1
 E glutamate           6.6          8           1
 F phenylalanine       6.6          8           2
 G glycine             2.5          3           1
 H histidine           2.5          3           1
 I isoleucine          6.6          8           2
 K lysine              7.4          9           1
 L leucine             7.4          9           2
 M methionine          3.3          4           1
 N asparagine          2.5          3           1
 P proline             6.6          8           1
 Q glutamine           8.3         10           2
 R arginine            7.4          9           3
 S serine              6.6          8           1
 T threonine           3.3          4           1
 V valine              8.3         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   microtubule-associated protein 1 light chain 3 alpha... 
MAP1LC3A              0.877   microtubule-associated protein 1 light chain 3 alpha...
MAP1LC3B              0.818   microtubule-associated proteins 1A/1B light chain 3 ...
MAP1LC3B2             0.800   microtubule-associated protein 1 light chain 3 beta...
LOC392288             0.686   PREDICTED: similar to microtubule-associated protei...
LOC392288             0.686   PREDICTED: similar to microtubule-associated protei...
LOC392288             0.686   PREDICTED: similar to microtubule-associated protei...
MAP1LC3C              0.532   microtubule-associated protein 1 light chain 3 gamma...
LOC652191             0.495   PREDICTED: similar to microtubule-associated protei...
LOC652191             0.495   PREDICTED: similar to microtubule-associated protei...
LOC652191             0.495   PREDICTED: similar to microtubule-associated protei...
GABARAPL2             0.336   GABA(A) receptor-associated protein-like 2 
GABARAPL1             0.255   GABA(A) receptor-associated protein like 1 
GABARAP               0.218   GABA(A) receptor-associated protein 
ATG12                 0.027   APG12 autophagy 12-like 
YAP1                  0.018   Yes-associated protein 1, 65kDa isoform 1 
AFF2                  0.014   fragile X mental retardation 2 
COPE                  0.009   epsilon subunit of coatomer protein complex isoform ...
COPE                  0.009   epsilon subunit of coatomer protein complex isoform ...
COPE                  0.009   epsilon subunit of coatomer protein complex isoform ...
AMIGO1                0.009   AMIGO protein 
ALG5                  0.005   dolichyl-phosphate beta-glucosyltransferase isoform 1...
MCTP1                 0.005   multiple C2 domains, transmembrane 1 isoform S [Homo...
MCTP1                 0.005   multiple C2 domains, transmembrane 1 isoform L [Hom...
CXorf23               0.005   hypothetical protein LOC256643 
DDX56                 0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 
CENPF                 0.005   centromere protein F 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press