Guide to the Human Genome
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Name: CENPP Sequence: fasta or formatted (288aa) NCBI GI: 59709758
Description:

centromere protein P

Referenced in:

Centromere Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         19           2
 C cysteine            1.7          5           1
 D aspartate           3.8         11           1
 E glutamate          11.5         33           2
 F phenylalanine       5.6         16           2
 G glycine             3.5         10           1
 H histidine           2.4          7           1
 I isoleucine          5.6         16           2
 K lysine              6.6         19           1
 L leucine            12.2         35           2
 M methionine          2.1          6           1
 N asparagine          3.5         10           2
 P proline             3.5         10           2
 Q glutamine           4.2         12           1
 R arginine            6.9         20           2
 S serine              9.0         26           2
 T threonine           4.5         13           1
 V valine              4.5         13           1
 W tryptophan          1.4          4           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   centromere protein P 
TRIP11                0.022   thyroid hormone receptor interactor 11 
KTN1                  0.015   kinectin 1 isoform b 
KTN1                  0.015   kinectin 1 isoform a 
KTN1                  0.015   kinectin 1 isoform c 
KTN1                  0.015   kinectin 1 isoform a 
MYH3                  0.013   myosin, heavy chain 3, skeletal muscle, embryonic [H...
VPS52                 0.013   vacuolar protein sorting 52 
LOC653720             0.011   PREDICTED: similar to Golgin subfamily A member 8-l...
SPARCL1               0.011   SPARC-like 1 
SPARCL1               0.011   SPARC-like 1 
KIAA1524              0.011   p90 autoantigen 
MYH14                 0.011   myosin, heavy chain 14 isoform 1 
MYH14                 0.011   myosin, heavy chain 14 isoform 2 
MYH14                 0.011   myosin, heavy chain 14 isoform 3 
CGN                   0.009   cingulin 
MAPK8IP3              0.009   mitogen-activated protein kinase 8 interacting prote...
MAPK8IP3              0.009   mitogen-activated protein kinase 8 interacting prote...
MYST4                 0.009   MYST histone acetyltransferase (monocytic leukemia)...
JAKMIP1               0.009   janus kinase and microtubule interacting protein 1 ...
GOLGA5                0.009   Golgi autoantigen, golgin subfamily a, 5 
LOC728080             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
BICD1                 0.007   bicaudal D homolog 1 isoform 2 
BICD1                 0.007   bicaudal D homolog 1 isoform 1 
MCF2                  0.007   MCF.2 cell line derived transforming sequence isofo...
MCF2                  0.007   MCF.2 cell line derived transforming sequence isofo...
KANK1                 0.007   KN motif and ankyrin repeat domains 1 isoform b [Hom...
KANK1                 0.007   KN motif and ankyrin repeat domains 1 isoform a [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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