Guide to the Human Genome
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Name: DDX17 Sequence: fasta or formatted (183aa) NCBI GI: 13787204
Description:

DEAD box polypeptide 17 isoform 2

Referenced in:

DEAD / H Helicase Family
Capping and Splicing

Other entries for this name:
alt prot [731aa] DEAD box polypeptide 17 isoform 3
alt prot [181aa] DEAD box polypeptide 17 isoform 4
alt prot [729aa] DEAD box polypeptide 17 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         16           3
 C cysteine            0.5          1           1
 D aspartate           3.8          7           1
 E glutamate           1.6          3           1
 F phenylalanine       1.6          3           1
 G glycine            17.5         32           7
 H histidine           0.5          1           1
 I isoleucine          1.1          2           1
 K lysine              1.6          3           1
 L leucine             2.2          4           1
 M methionine          2.7          5           1
 N asparagine          3.3          6           2
 P proline             8.2         15           9
 Q glutamine           9.3         17           2
 R arginine            8.2         15           2
 S serine             12.6         23           3
 T threonine           7.1         13           2
 V valine              1.1          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            8.2         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD box polypeptide 17 isoform 2 
DDX17                 1.000   DEAD box polypeptide 17 isoform 3 
DDX17                 0.975   DEAD box polypeptide 17 isoform 4 
DDX17                 0.975   DEAD box polypeptide 17 isoform 1 
IRS4                  0.070   insulin receptor substrate 4 
FUS                   0.070   fusion (involved in t(12;16) in malignant liposarcoma...
ABI1                  0.070   abl-interactor 1 isoform c 
HNRNPUL1              0.059   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
HNRNPUL1              0.059   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
ABI1                  0.056   abl-interactor 1 isoform d 
ABI1                  0.056   abl-interactor 1 isoform b 
FLG2                  0.056   filaggrin family member 2 
DDX5                  0.053   DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 
ARID1B                0.053   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.053   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.053   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
HRNR                  0.050   hornerin 
HNRNPA2B1             0.050   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.050   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
KRT10                 0.047   keratin 10 
KRT1                  0.045   keratin 1 
SFRS2B                0.045   splicing factor, arginine/serine-rich 2B 
ZNF326                0.042   zinc finger protein 326 isoform 1 
TAF15                 0.042   TBP-associated factor 15 isoform 2 
TAF15                 0.042   TBP-associated factor 15 isoform 1 
EWSR1                 0.039   Ewing sarcoma breakpoint region 1 isoform 5 
EWSR1                 0.039   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.039   Ewing sarcoma breakpoint region 1 isoform 2 
ILF3                  0.039   interleukin enhancer binding factor 3 isoform d [Ho...
ILF3                  0.039   interleukin enhancer binding factor 3 isoform a [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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