Guide to the Human Genome
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Name: EWSR1 Sequence: fasta or formatted (354aa) NCBI GI: 253970506
Description:

Ewing sarcoma breakpoint region 1 isoform 5

Referenced in:

Nuclear Receptors

Other entries for this name:
alt prot [661aa] Ewing sarcoma breakpoint region 1 isoform 1
alt prot [655aa] Ewing sarcoma breakpoint region 1 isoform 3
alt prot [600aa] Ewing sarcoma breakpoint region 1 isoform 4
alt prot [656aa] Ewing sarcoma breakpoint region 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         27           3
 C cysteine            0.0          0           0
 D aspartate           2.5          9           1
 E glutamate           1.4          5           1
 F phenylalanine       0.8          3           1
 G glycine            13.0         46           3
 H histidine           0.6          2           1
 I isoleucine          0.3          1           1
 K lysine              1.1          4           2
 L leucine             1.4          5           1
 M methionine          1.7          6           1
 N asparagine          2.0          7           1
 P proline             9.6         34           2
 Q glutamine          14.4         51           2
 R arginine            3.1         11           1
 S serine             15.0         53           3
 T threonine          11.3         40           3
 V valine              2.3          8           1
 W tryptophan          0.3          1           1
 Y tyrosine           11.6         41           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ewing sarcoma breakpoint region 1 isoform 5 
EWSR1                 0.919   Ewing sarcoma breakpoint region 1 isoform 2 
EWSR1                 0.919   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.909   Ewing sarcoma breakpoint region 1 isoform 1 
EWSR1                 0.556   Ewing sarcoma breakpoint region 1 isoform 4 
FUS                   0.170   fusion (involved in t(12;16) in malignant liposarcoma...
TAF15                 0.090   TBP-associated factor 15 isoform 1 
TAF15                 0.086   TBP-associated factor 15 isoform 2 
POLR2A                0.076   DNA-directed RNA polymerase II A 
RBM14                 0.069   RNA binding motif protein 14 
FLG2                  0.066   filaggrin family member 2 
ARID1A                0.062   AT rich interactive domain 1A isoform a 
ARID1A                0.062   AT rich interactive domain 1A isoform b 
HRNR                  0.062   hornerin 
ILF3                  0.049   interleukin enhancer binding factor 3 isoform d [Ho...
ILF3                  0.049   interleukin enhancer binding factor 3 isoform a [Hom...
NUP214                0.046   nucleoporin 214kDa 
RFX1                  0.045   regulatory factor X1 
EYA1                  0.044   eyes absent 1 isoform c 
SS18                  0.042   synovial sarcoma translocation, chromosome 18 isofor...
EYA1                  0.042   eyes absent 1 isoform b 
EYA1                  0.042   eyes absent 1 isoform b 
EYA1                  0.042   eyes absent 1 isoform a 
BAG4                  0.042   BCL2-associated athanogene 4 
RBMX                  0.042   RNA binding motif protein, X-linked 
ZFR                   0.042   zinc finger RNA binding protein 
MUC6                  0.041   mucin 6, gastric 
SS18                  0.039   synovial sarcoma translocation, chromosome 18 isofor...
ZFR2                  0.039   zinc finger RNA binding protein 2 isoform 1 
HNRNPUL1              0.039   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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