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Search of human proteins with 6857818
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6857818 nucleophosmin/nucleoplasmin 3 [Homo sapiens]
(178 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6857818 nucleophosmin/nucleoplasmin 3 [Homo sapiens] 357 3e-99
gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens] 106 9e-24
gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens] 106 9e-24
gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens] 106 9e-24
gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 100 7e-22
gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 100 7e-22
gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 100 7e-22
gi|33391150 nucleoplasmin 2 [Homo sapiens] 92 2e-19
gi|75677335 digestive-organ expansion factor homolog [Homo sapiens] 38 0.004
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 36 0.020
gi|87299628 biorientation of chromosomes in cell division 1-like... 35 0.044
gi|194688135 high-mobility group box 2 [Homo sapiens] 34 0.058
gi|194688133 high-mobility group box 2 [Homo sapiens] 34 0.058
gi|11321591 high-mobility group box 2 [Homo sapiens] 34 0.058
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 34 0.058
gi|21361499 SUMO1/sentrin/SMT3 specific protease 3 [Homo sapiens] 34 0.076
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 34 0.076
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 34 0.076
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 34 0.076
gi|197313748 SET domain containing 2 [Homo sapiens] 33 0.099
gi|156142199 euchromatic histone-lysine N-methyltransferase 2 is... 33 0.13
gi|156142197 euchromatic histone-lysine N-methyltransferase 2 is... 33 0.13
gi|4503523 eukaryotic translation initiation factor 3 subunit D ... 33 0.17
gi|31563526 solute carrier family 24 (sodium/potassium/calcium e... 33 0.17
gi|116268091 PHD finger protein 23 [Homo sapiens] 32 0.22
gi|118600967 shroom family member 4 [Homo sapiens] 32 0.29
gi|24431933 reticulon 4 isoform B [Homo sapiens] 32 0.29
gi|47519490 reticulon 4 isoform D [Homo sapiens] 32 0.29
gi|24431935 reticulon 4 isoform A [Homo sapiens] 32 0.29
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 32 0.29
>gi|6857818 nucleophosmin/nucleoplasmin 3 [Homo sapiens]
Length = 178
Score = 357 bits (916), Expect = 3e-99
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MAAGTAAALAFLSQESRTRAGGVGGLRVPAPVTMDSFFFGCELSGHTRSFTFKVEEEDDA 60
MAAGTAAALAFLSQESRTRAGGVGGLRVPAPVTMDSFFFGCELSGHTRSFTFKVEEEDDA
Sbjct: 1 MAAGTAAALAFLSQESRTRAGGVGGLRVPAPVTMDSFFFGCELSGHTRSFTFKVEEEDDA 60
Query: 61 EHVLALTMLCLTEGAKDECNVVEVVARNHDHQEIAVPVANLKLSCQPMLSLDDFQLQPPV 120
EHVLALTMLCLTEGAKDECNVVEVVARNHDHQEIAVPVANLKLSCQPMLSLDDFQLQPPV
Sbjct: 61 EHVLALTMLCLTEGAKDECNVVEVVARNHDHQEIAVPVANLKLSCQPMLSLDDFQLQPPV 120
Query: 121 TFRLKSGSGPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEEVELCPILPAKKQGGRP 178
TFRLKSGSGPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEEVELCPILPAKKQGGRP
Sbjct: 121 TFRLKSGSGPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEEVELCPILPAKKQGGRP 178
>gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens]
Length = 259
Score = 106 bits (265), Expect = 9e-24
Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 10/139 (7%)
Query: 30 APVTMDSFFFGCELSGHTRSFTFKVEEEDDAEHVLALTMLCLTEGAKDECNVVEVVARNH 89
+P+ ++ FGCEL + + FKV+ D+ EH L+L + L GAKDE ++VE A N+
Sbjct: 10 SPLRPQNYLFGCELKAD-KDYHFKVDN-DENEHQLSLRTVSLGAGAKDELHIVEAEAMNY 67
Query: 90 DHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEE 149
+ I V +A LK+S QP +SL F++ PPV RLK GSGPV I+G+H +
Sbjct: 68 EGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAV-------- 119
Query: 150 ESEEEEEDSDEEEVELCPI 168
E + E ED +EE+V+L I
Sbjct: 120 EEDAESEDEEEEDVKLLSI 138
>gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens]
Length = 265
Score = 106 bits (265), Expect = 9e-24
Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 10/139 (7%)
Query: 30 APVTMDSFFFGCELSGHTRSFTFKVEEEDDAEHVLALTMLCLTEGAKDECNVVEVVARNH 89
+P+ ++ FGCEL + + FKV+ D+ EH L+L + L GAKDE ++VE A N+
Sbjct: 10 SPLRPQNYLFGCELKAD-KDYHFKVDN-DENEHQLSLRTVSLGAGAKDELHIVEAEAMNY 67
Query: 90 DHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEE 149
+ I V +A LK+S QP +SL F++ PPV RLK GSGPV I+G+H +
Sbjct: 68 EGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAV-------- 119
Query: 150 ESEEEEEDSDEEEVELCPI 168
E + E ED +EE+V+L I
Sbjct: 120 EEDAESEDEEEEDVKLLSI 138
>gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens]
Length = 294
Score = 106 bits (265), Expect = 9e-24
Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 10/139 (7%)
Query: 30 APVTMDSFFFGCELSGHTRSFTFKVEEEDDAEHVLALTMLCLTEGAKDECNVVEVVARNH 89
+P+ ++ FGCEL + + FKV+ D+ EH L+L + L GAKDE ++VE A N+
Sbjct: 10 SPLRPQNYLFGCELKAD-KDYHFKVDN-DENEHQLSLRTVSLGAGAKDELHIVEAEAMNY 67
Query: 90 DHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEE 149
+ I V +A LK+S QP +SL F++ PPV RLK GSGPV I+G+H +
Sbjct: 68 EGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAV-------- 119
Query: 150 ESEEEEEDSDEEEVELCPI 168
E + E ED +EE+V+L I
Sbjct: 120 EEDAESEDEEEEDVKLLSI 138
>gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 100 bits (249), Expect = 7e-22
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 30 APVTMDSFFFGCELSGHTRSFTFKVEEEDDAEHVLALTMLCLTEGAKDECNVVEVVARNH 89
+P+ ++ FGCEL + FKV+ D+ EH L+L + L G KDE ++VE A N+
Sbjct: 6 SPLRPQNYLFGCELKAD-KDDHFKVDN-DENEHQLSLRTVSLGAGTKDELHIVEAEAMNY 63
Query: 90 DHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEE 149
I V +A LK+S QP +SL F++ PPV R K GSGPV I+G+H +
Sbjct: 64 KGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAV-------- 115
Query: 150 ESEEEEEDSDEEEVELCPI 168
E + E ED +EE+V+L I
Sbjct: 116 EEDAESEDEEEEDVKLLSI 134
>gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 100 bits (249), Expect = 7e-22
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 30 APVTMDSFFFGCELSGHTRSFTFKVEEEDDAEHVLALTMLCLTEGAKDECNVVEVVARNH 89
+P+ ++ FGCEL + FKV+ D+ EH L+L + L G KDE ++VE A N+
Sbjct: 6 SPLRPQNYLFGCELKAD-KDDHFKVDN-DENEHQLSLRTVSLGAGTKDELHIVEAEAMNY 63
Query: 90 DHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEE 149
I V +A LK+S QP +SL F++ PPV R K GSGPV I+G+H +
Sbjct: 64 KGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAV-------- 115
Query: 150 ESEEEEEDSDEEEVELCPI 168
E + E ED +EE+V+L I
Sbjct: 116 EEDAESEDEEEEDVKLLSI 134
>gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 100 bits (249), Expect = 7e-22
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 30 APVTMDSFFFGCELSGHTRSFTFKVEEEDDAEHVLALTMLCLTEGAKDECNVVEVVARNH 89
+P+ ++ FGCEL + FKV+ D+ EH L+L + L G KDE ++VE A N+
Sbjct: 6 SPLRPQNYLFGCELKAD-KDDHFKVDN-DENEHQLSLRTVSLGAGTKDELHIVEAEAMNY 63
Query: 90 DHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEE 149
I V +A LK+S QP +SL F++ PPV R K GSGPV I+G+H +
Sbjct: 64 KGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAV-------- 115
Query: 150 ESEEEEEDSDEEEVELCPI 168
E + E ED +EE+V+L I
Sbjct: 116 EEDAESEDEEEEDVKLLSI 134
>gi|33391150 nucleoplasmin 2 [Homo sapiens]
Length = 214
Score = 92.4 bits (228), Expect = 2e-19
Identities = 53/128 (41%), Positives = 82/128 (64%), Gaps = 4/128 (3%)
Query: 39 FGCELSGHTRSFTFKVEEEDDAEHVLALTMLCLTEGAKDECNVVEVV--ARNHDHQEIAV 96
+GCELS R++TF+ + E L L +CL E AK+E + VE++ A D + V
Sbjct: 19 WGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMHRVEILPPANQEDKKMQPV 78
Query: 97 PVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEEESEEEEE 156
+A+L+ S PM+S+ QL PPVTF+L++GSGPV ++G+ + ++D++ EE EEEE
Sbjct: 79 TIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQERYE--ASDLTWEEEEEEEG 136
Query: 157 DSDEEEVE 164
+ +EEE E
Sbjct: 137 EEEEEEEE 144
>gi|75677335 digestive-organ expansion factor homolog [Homo sapiens]
Length = 756
Score = 38.1 bits (87), Expect = 0.004
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 126 SGSGPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEEV 163
S S P +++G H+++ +VSEEE E+EEE+ +E+ +
Sbjct: 62 SESEPQQVSGYHRLLATLKNVSEEEEEDEEEEEEEDSI 99
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 35.8 bits (81), Expect = 0.020
Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 133 ITG-RHQIVTMSNDVSEEESEEEEEDSDEEEVE 164
+TG R Q++ +S + SEEE EEE+E+ +EEE E
Sbjct: 1054 VTGERGQLLELSKESSEEEEEEEDEEEEEEEEE 1086
Score = 30.4 bits (67), Expect = 0.84
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 144 NDVSEEESEEEEEDSDEEEVE 164
++ EEE EEEEED +EEE E
Sbjct: 1077 DEEEEEEEEEEEEDEEEEEEE 1097
Score = 29.3 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 148 EEESEEEEEDSDEEEVELCPILPAKKQ 174
EEE EEEEE+ +EE ++ P K Q
Sbjct: 1091 EEEEEEEEEEEEEENIQSSPPRLTKPQ 1117
Score = 28.5 bits (62), Expect = 3.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ +EEE E
Sbjct: 1087 EEEDEEEEEEEEEEEEE 1103
Score = 28.5 bits (62), Expect = 3.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ +EEE E
Sbjct: 1351 EEEEEEEEEEEEEEEEE 1367
Score = 28.5 bits (62), Expect = 3.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ +EEE E
Sbjct: 1352 EEEEEEEEEEEEEEEEE 1368
Score = 28.1 bits (61), Expect = 4.1
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ +EEE E
Sbjct: 1354 EEEEEEEEEEEEEEEGE 1370
Score = 27.3 bits (59), Expect = 7.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEE++ +EEE E
Sbjct: 1082 EEEEEEEEDEEEEEEEE 1098
Score = 27.3 bits (59), Expect = 7.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEE+E+ +EEE E
Sbjct: 1083 EEEEEEEDEEEEEEEEE 1099
Score = 27.3 bits (59), Expect = 7.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EE+EE+ +EEE E
Sbjct: 1084 EEEEEEDEEEEEEEEEE 1100
Score = 27.3 bits (59), Expect = 7.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE E+EEE+ +EEE E
Sbjct: 1085 EEEEEDEEEEEEEEEEE 1101
Score = 27.3 bits (59), Expect = 7.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE +EEEE+ +EEE E
Sbjct: 1086 EEEEDEEEEEEEEEEEE 1102
Score = 27.3 bits (59), Expect = 7.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EE+ EEEEE+ +EEE E
Sbjct: 1088 EEDEEEEEEEEEEEEEE 1104
Score = 27.3 bits (59), Expect = 7.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 146 VSEEESEEEEEDSDEEEVE 164
+ EE EEEEE+ +EEE E
Sbjct: 1348 IKPEEEEEEEEEEEEEEEE 1366
Score = 27.3 bits (59), Expect = 7.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 148 EEESEEEEEDSDEEE 162
EEE EEEEE+ +EEE
Sbjct: 1359 EEEEEEEEEEGEEEE 1373
Score = 26.9 bits (58), Expect = 9.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 144 NDVSEEESEEEEEDSDEEEVE 164
+D+ + E EEEEE+ +EEE E
Sbjct: 1345 DDLIKPEEEEEEEEEEEEEEE 1365
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 34.7 bits (78), Expect = 0.044
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
Query: 66 LTMLCLTEGAKDECNVVEVVARNHDHQEIAVPVANLKLSCQPMLSL---DDFQLQPPVTF 122
L ++ E K+ N+ E N D +E V + +P SL DD + P
Sbjct: 2911 LKVMQTDESNKETANLQERSISNDDGEEKIVTSVRRR-GRKPKRSLTVSDDAESSEPERK 2969
Query: 123 RLKSGSGPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEE 162
R KS S PV D E+ES+EEEE+ +E+E
Sbjct: 2970 RQKSVSDPVE------------DKKEQESDEEEEEEEEDE 2997
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 34.3 bits (77), Expect = 0.058
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 129 GPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEE 162
GP R TG + N+ +EE EEEEED DEEE
Sbjct: 174 GPGRPTGSKK----KNEPEDEEEEEEEEDEDEEE 203
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 34.3 bits (77), Expect = 0.058
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 129 GPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEE 162
GP R TG + N+ +EE EEEEED DEEE
Sbjct: 174 GPGRPTGSKK----KNEPEDEEEEEEEEDEDEEE 203
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 34.3 bits (77), Expect = 0.058
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 129 GPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEE 162
GP R TG + N+ +EE EEEEED DEEE
Sbjct: 174 GPGRPTGSKK----KNEPEDEEEEEEEEDEDEEE 203
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 34.3 bits (77), Expect = 0.058
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 127 GSGPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEEVE 164
G GP + ++ +++ EEE EEEEE+ +EEE E
Sbjct: 868 GGGPPALEEDLTVININSSDEEEEEEEEEEEEEEEEEE 905
Score = 28.1 bits (61), Expect = 4.1
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 148 EEESEEEEEDSDEEE 162
EEE EEEEED +EEE
Sbjct: 900 EEEEEEEEEDFEEEE 914
Score = 26.9 bits (58), Expect = 9.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ D EE E
Sbjct: 898 EEEEEEEEEEEDFEEEE 914
Score = 26.9 bits (58), Expect = 9.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 149 EESEEEEEDSDEEEVELCPILPAKKQGG 176
EE EEEE++ +EEE+E L GG
Sbjct: 943 EEEEEEEDEEEEEELEEVEDLEFGTAGG 970
>gi|21361499 SUMO1/sentrin/SMT3 specific protease 3 [Homo sapiens]
Length = 574
Score = 33.9 bits (76), Expect = 0.076
Identities = 27/59 (45%), Positives = 28/59 (47%), Gaps = 17/59 (28%)
Query: 118 PPVTFRLKSGSG-----------PVRITGRHQIVTMSNDVS---EEESEEEEEDSDEEE 162
PP RLKSG G P R R + S D S EEE EEEEED DEEE
Sbjct: 36 PPPKPRLKSGGGFGPDPGSGTTVPAR---RLPVPRPSFDASASEEEEEEEEEEDEDEEE 91
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 33.9 bits (76), Expect = 0.076
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 144 NDVSEEESEEEEEDSDEEE 162
ND+ EEE EEEEED +EEE
Sbjct: 63 NDLGEEEEEEEEEDEEEEE 81
Score = 32.0 bits (71), Expect = 0.29
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 117 QPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEEVE 164
QP RL++ + V G + + EEE EEEEED D++E+E
Sbjct: 48 QPEPDERLEAAACEVNDLGEEE------EEEEEEDEEEEEDDDDDELE 89
Score = 27.7 bits (60), Expect = 5.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 138 QIVTMSNDVSEEESEEEEEDSDEEEVEL 165
++ + + EEE E+EEE+ D+++ EL
Sbjct: 61 EVNDLGEEEEEEEEEDEEEEEDDDDDEL 88
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 33.9 bits (76), Expect = 0.076
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 144 NDVSEEESEEEEEDSDEEE 162
ND+ EEE EEEEED +EEE
Sbjct: 264 NDLGEEEEEEEEEDEEEEE 282
Score = 32.0 bits (71), Expect = 0.29
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 117 QPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEEVE 164
QP RL++ + V G + + EEE EEEEED D++E+E
Sbjct: 249 QPEPDERLEAAACEVNDLGEEE------EEEEEEDEEEEEDDDDDELE 290
Score = 27.7 bits (60), Expect = 5.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 138 QIVTMSNDVSEEESEEEEEDSDEEEVEL 165
++ + + EEE E+EEE+ D+++ EL
Sbjct: 262 EVNDLGEEEEEEEEEDEEEEEDDDDDEL 289
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 33.9 bits (76), Expect = 0.076
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 144 NDVSEEESEEEEEDSDEEE 162
ND+ EEE EEEEED +EEE
Sbjct: 264 NDLGEEEEEEEEEDEEEEE 282
Score = 32.0 bits (71), Expect = 0.29
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 117 QPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEEVE 164
QP RL++ + V G + + EEE EEEEED D++E+E
Sbjct: 249 QPEPDERLEAAACEVNDLGEEE------EEEEEEDEEEEEDDDDDELE 290
Score = 27.7 bits (60), Expect = 5.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 138 QIVTMSNDVSEEESEEEEEDSDEEEVEL 165
++ + + EEE E+EEE+ D+++ EL
Sbjct: 262 EVNDLGEEEEEEEEEDEEEEEDDDDDEL 289
>gi|197313748 SET domain containing 2 [Homo sapiens]
Length = 2564
Score = 33.5 bits (75), Expect = 0.099
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 104 SCQPMLSLDDFQLQPPVTFRLK---SGSGPVRITGRHQIVTMSNDVSEEESEEEEEDSDE 160
SC L+++D VT+ LK SG P ++ H+ + S++ S +ES+ E+ DSD+
Sbjct: 1002 SCDLNLTMED---SDGVTYALKCDSSGHAPEIVSTVHEDYSGSSESSNDESDSEDTDSDD 1058
Query: 161 EEV 163
+
Sbjct: 1059 SSI 1061
>gi|156142199 euchromatic histone-lysine N-methyltransferase 2
isoform b [Homo sapiens]
Length = 1176
Score = 33.1 bits (74), Expect = 0.13
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 136 RHQIVTMSNDVSEEESEEEEEDSDEEEVE 164
+ ++ ++ +SEEE EEEEE+ +EEE E
Sbjct: 288 KSEVEALTEQLSEEEEEEEEEEEEEEEEE 316
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 142 MSNDVSEEESEEEEEDSDEEEVE 164
+S + EEE EEEEE+ +EEE E
Sbjct: 298 LSEEEEEEEEEEEEEEEEEEEEE 320
Score = 29.3 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 138 QIVTMSNDVSEEESEEEEEDSDEEEVE 164
Q+ + EEE EEEEE+ +EEE E
Sbjct: 297 QLSEEEEEEEEEEEEEEEEEEEEEEEE 323
Score = 28.1 bits (61), Expect = 4.1
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ +EEE E
Sbjct: 309 EEEEEEEEEEEEEEEDE 325
Score = 27.3 bits (59), Expect = 7.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ +EE+ E
Sbjct: 310 EEEEEEEEEEEEEEDEE 326
>gi|156142197 euchromatic histone-lysine N-methyltransferase 2
isoform a [Homo sapiens]
Length = 1210
Score = 33.1 bits (74), Expect = 0.13
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 136 RHQIVTMSNDVSEEESEEEEEDSDEEEVE 164
+ ++ ++ +SEEE EEEEE+ +EEE E
Sbjct: 288 KSEVEALTEQLSEEEEEEEEEEEEEEEEE 316
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 142 MSNDVSEEESEEEEEDSDEEEVE 164
+S + EEE EEEEE+ +EEE E
Sbjct: 298 LSEEEEEEEEEEEEEEEEEEEEE 320
Score = 29.3 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 138 QIVTMSNDVSEEESEEEEEDSDEEEVE 164
Q+ + EEE EEEEE+ +EEE E
Sbjct: 297 QLSEEEEEEEEEEEEEEEEEEEEEEEE 323
Score = 28.1 bits (61), Expect = 4.1
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ +EEE E
Sbjct: 309 EEEEEEEEEEEEEEEDE 325
Score = 27.3 bits (59), Expect = 7.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ +EE+ E
Sbjct: 310 EEEEEEEEEEEEEEDEE 326
>gi|4503523 eukaryotic translation initiation factor 3 subunit D
[Homo sapiens]
Length = 548
Score = 32.7 bits (73), Expect = 0.17
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 141 TMSNDVSEEESEEEEEDSDEEE 162
T S+D EEE EEEEE+ +EEE
Sbjct: 526 TFSSDEDEEEEEEEEEEEEEEE 547
Score = 27.7 bits (60), Expect = 5.4
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 147 SEEESEEEEEDSDEEEVE 164
S+E+ EEEEE+ +EEE E
Sbjct: 529 SDEDEEEEEEEEEEEEEE 546
>gi|31563526 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 3 [Homo sapiens]
Length = 644
Score = 32.7 bits (73), Expect = 0.17
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 119 PVTFRLKSGSGP-------VRITGRHQIVTMSNDVSEEESEEEEEDSDEEEVE 164
P+ +++G+GP V T R +V + + +E E+E+ E D +EEE E
Sbjct: 376 PIKHTVENGTGPSSAPDRGVNGTRRDDVVAEAGNETENENEDNENDEEEEEDE 428
>gi|116268091 PHD finger protein 23 [Homo sapiens]
Length = 403
Score = 32.3 bits (72), Expect = 0.22
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 144 NDVSEEESEEEEEDSDEEEVEL-------CPILPAKKQGGRP 178
+D EE EEEEE+ +EEE+ P+LP + RP
Sbjct: 243 SDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRP 284
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 32.0 bits (71), Expect = 0.29
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 148 EEESEEEEEDSDEEEVELCP 167
EEE EEEEE+++EEE EL P
Sbjct: 1142 EEEEEEEEEEAEEEEEELPP 1161
Score = 29.3 bits (64), Expect = 1.9
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ +EEE E
Sbjct: 1137 EEEEEEEEEEEEEEEAE 1153
Score = 28.5 bits (62), Expect = 3.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ +EEE E
Sbjct: 1132 EEEEEEEEEEEEEEEEE 1148
Score = 28.5 bits (62), Expect = 3.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ +EEE E
Sbjct: 1133 EEEEEEEEEEEEEEEEE 1149
Score = 28.5 bits (62), Expect = 3.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ +EEE E
Sbjct: 1134 EEEEEEEEEEEEEEEEE 1150
Score = 28.5 bits (62), Expect = 3.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEEEE+ +EEE E
Sbjct: 1135 EEEEEEEEEEEEEEEEE 1151
Score = 28.1 bits (61), Expect = 4.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 148 EEESEEEEEDSDEEEVELCP 167
EEE EEEEE+ EEE E P
Sbjct: 1141 EEEEEEEEEEEAEEEEEELP 1160
Score = 27.3 bits (59), Expect = 7.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 148 EEESEEEEEDSDEEEVE 164
+EE EEEEE+ +EEE E
Sbjct: 1131 QEEEEEEEEEEEEEEEE 1147
>gi|24431933 reticulon 4 isoform B [Homo sapiens]
Length = 373
Score = 32.0 bits (71), Expect = 0.29
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 103 LSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEE 162
L P++S D +P F+ + P ++ EEE EEE+ED D EE
Sbjct: 4 LDQSPLVSSSDSPPRPQPAFKYQFVREP------------EDEEEEEEEEEEDEDEDLEE 51
Query: 163 VELCPILPAKKQGGRP 178
+E+ PA P
Sbjct: 52 LEVLERKPAAGLSAAP 67
>gi|47519490 reticulon 4 isoform D [Homo sapiens]
Length = 392
Score = 32.0 bits (71), Expect = 0.29
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 103 LSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEE 162
L P++S D +P F+ + P ++ EEE EEE+ED D EE
Sbjct: 4 LDQSPLVSSSDSPPRPQPAFKYQFVREP------------EDEEEEEEEEEEDEDEDLEE 51
Query: 163 VELCPILPAKKQGGRP 178
+E+ PA P
Sbjct: 52 LEVLERKPAAGLSAAP 67
>gi|24431935 reticulon 4 isoform A [Homo sapiens]
Length = 1192
Score = 32.0 bits (71), Expect = 0.29
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 103 LSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEEESEEEEEDSDEEE 162
L P++S D +P F+ + P ++ EEE EEE+ED D EE
Sbjct: 4 LDQSPLVSSSDSPPRPQPAFKYQFVREP------------EDEEEEEEEEEEDEDEDLEE 51
Query: 163 VELCPILPAKKQGGRP 178
+E+ PA P
Sbjct: 52 LEVLERKPAAGLSAAP 67
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 32.0 bits (71), Expect = 0.29
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 79 CNVVEVVARN-HDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRH 137
C VEV+ + + +E PV + LDD++ + S ++ G
Sbjct: 470 CAAVEVMEQGVPEKEETPPPVEPEEEEDTEDAGLDDWEA-------MASDEETEKVEGNK 522
Query: 138 QIVTMSNDVSEEESEEEEEDSDEEEVE 164
+ + + EEE EEEEE+ DEE E
Sbjct: 523 VHIEVKENPEEEEEEEEEEEEDEESEE 549
Score = 28.9 bits (63), Expect = 2.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 148 EEESEEEEEDSDEEEVE 164
EEE EEE+E+S+EEE E
Sbjct: 537 EEEEEEEDEESEEEEEE 553
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,349,692
Number of Sequences: 37866
Number of extensions: 340028
Number of successful extensions: 8502
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 4133
Number of HSP's gapped (non-prelim): 2916
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.