Guide to the Human Genome
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Name: EIF3D Sequence: fasta or formatted (548aa) NCBI GI: 4503523
Description:

eukaryotic translation initiation factor 3 subunit D

Referenced in:

Translation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         28           1
 C cysteine            2.0         11           2
 D aspartate           7.5         41           2
 E glutamate           8.6         47          15
 F phenylalanine       4.6         25           2
 G glycine             4.7         26           3
 H histidine           1.3          7           1
 I isoleucine          4.4         24           1
 K lysine              7.1         39           2
 L leucine             6.6         36           2
 M methionine          2.6         14           1
 N asparagine          5.1         28           2
 P proline             3.8         21           2
 Q glutamine           5.8         32           2
 R arginine            7.7         42           2
 S serine              6.9         38           2
 T threonine           4.9         27           3
 V valine              5.7         31           2
 W tryptophan          1.8         10           1
 Y tyrosine            3.8         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eukaryotic translation initiation factor 3 subunit D ... 
PELP1                 0.015   proline, glutamic acid and leucine rich protein 1 [...
VPRBP                 0.014   HIV-1 Vpr binding protein 
CHIC1                 0.014   cysteine-rich hydrophobic domain 1 
GTF3C3                0.014   general transcription factor IIIC, polypeptide 3, 102...
SCAF1                 0.014   SR-related CTD-associated factor 1 
ANO8                  0.013   anoctamin 8 
TTBK1                 0.013   tau tubulin kinase 1 
BAZ1B                 0.013   bromodomain adjacent to zinc finger domain, 1B [Homo...
ATRX                  0.013   transcriptional regulator ATRX isoform 2 
ATRX                  0.013   transcriptional regulator ATRX isoform 1 
SLC24A1               0.013   solute carrier family 24 (sodium/potassium/calcium ex...
MYST4                 0.013   MYST histone acetyltransferase (monocytic leukemia)...
MYT1L                 0.013   myelin transcription factor 1-like 
ZBTB7C                0.013   zinc finger and BTB domain containing 7C 
EHMT2                 0.013   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.013   euchromatic histone-lysine N-methyltransferase 2 is...
MYT1                  0.013   myelin transcription factor 1 
DCAF8L2               0.012   DDB1 and CUL4 associated factor 8-like 2 
ZBTB4                 0.012   zinc finger and BTB domain containing 4 
ZBTB4                 0.012   zinc finger and BTB domain containing 4 
POLR3GL               0.012   polymerase (RNA) III (DNA directed) polypeptide G (3...
CNGB1                 0.012   cyclic nucleotide gated channel beta 1 isoform a [H...
PHF23                 0.011   PHD finger protein 23 
EIF3A                 0.011   eukaryotic translation initiation factor 3, subunit 1...
LOC100288837          0.011   PREDICTED: hypothetical protein XP_002343931, parti...
BCL11A                0.011   B-cell CLL/lymphoma 11A isoform 1 
BCL11A                0.011   B-cell CLL/lymphoma 11A isoform 2 
APLP2                 0.011   amyloid beta (A4) precursor-like protein 2 isoform ...
APLP2                 0.011   amyloid beta (A4) precursor-like protein 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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