Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 68303563

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|68303563 proteasome alpha 8 subunit isoform 2 [Homo sapiens]
         (250 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|68303563 proteasome alpha 8 subunit isoform 2 [Homo sapiens]       485   e-137
gi|68303561 proteasome alpha 8 subunit isoform 1 [Homo sapiens]       479   e-135
gi|4506189 proteasome alpha 7 subunit [Homo sapiens]                  416   e-116
gi|68303565 proteasome alpha 8 subunit isoform 3 [Homo sapiens]       392   e-109
gi|156713442 proteasome alpha 4 subunit isoform 1 [Homo sapiens]      169   3e-42
gi|4506185 proteasome alpha 4 subunit isoform 1 [Homo sapiens]        169   3e-42
gi|4506181 proteasome subunit alpha type 2 [Homo sapiens]             159   3e-39
gi|23110942 proteasome alpha 5 subunit [Homo sapiens]                 157   6e-39
gi|4506179 proteasome alpha 1 subunit isoform 2 [Homo sapiens]        141   6e-34
gi|23110935 proteasome alpha 1 subunit isoform 1 [Homo sapiens]       141   6e-34
gi|23110944 proteasome alpha 6 subunit [Homo sapiens]                 124   6e-29
gi|4506183 proteasome alpha 3 subunit isoform 1 [Homo sapiens]        122   4e-28
gi|23110939 proteasome alpha 3 subunit isoform 2 [Homo sapiens]       117   7e-27
gi|156713444 proteasome alpha 4 subunit isoform 2 [Homo sapiens]      116   2e-26
gi|221316716 proteasome alpha 1 subunit isoform 3 [Homo sapiens]       83   3e-16
gi|169206322 PREDICTED: similar to hCG30646 [Homo sapiens]             49   5e-06
gi|239750562 PREDICTED: similar to hCG30646 [Homo sapiens]             49   5e-06
gi|239744861 PREDICTED: similar to hCG30646 [Homo sapiens]             49   5e-06
gi|4506191 proteasome beta 10 subunit proprotein [Homo sapiens]        43   2e-04
gi|23110932 proteasome beta 9 subunit isoform 2 proprotein [Homo...    41   0.001
gi|4506205 proteasome beta 9 subunit isoform 1 proprotein [Homo ...    41   0.001
gi|4506201 proteasome beta 5 subunit isoform 1 [Homo sapiens]          37   0.021
gi|70980531 GGA binding partner [Homo sapiens]                         34   0.10 
gi|4506193 proteasome beta 1 subunit [Homo sapiens]                    33   0.23 
gi|222144262 proteasome beta 5 subunit isoform 3 [Homo sapiens]        29   3.4  
gi|102467242 inner centromere protein antigens 135/155kDa isofor...    29   3.4  
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]    29   4.4  
gi|109255234 centrosomal protein 290kDa [Homo sapiens]                 28   5.8  
gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]              28   5.8  
gi|21361831 partitioning-defective protein 3 homolog [Homo sapiens]    28   7.5  

>gi|68303563 proteasome alpha 8 subunit isoform 2 [Homo sapiens]
          Length = 250

 Score =  485 bits (1249), Expect = e-137
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT 60
           MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT
Sbjct: 1   MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT 60

Query: 61  VRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKY 120
           VRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKY
Sbjct: 61  VRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKY 120

Query: 121 TQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTE 180
           TQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTE
Sbjct: 121 TQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTE 180

Query: 181 DAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKEE 240
           DAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKEE
Sbjct: 181 DAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKEE 240

Query: 241 AEKKKSKKSV 250
           AEKKKSKKSV
Sbjct: 241 AEKKKSKKSV 250


>gi|68303561 proteasome alpha 8 subunit isoform 1 [Homo sapiens]
          Length = 256

 Score =  479 bits (1232), Expect = e-135
 Identities = 250/256 (97%), Positives = 250/256 (97%), Gaps = 6/256 (2%)

Query: 1   MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT 60
           MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT
Sbjct: 1   MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT 60

Query: 61  VRKICALDDHVCMAFA------GLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIA 114
           VRKICALDDHVCMAFA      GLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIA
Sbjct: 61  VRKICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIA 120

Query: 115 TLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFL 174
           TLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFL
Sbjct: 121 TLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFL 180

Query: 175 EKNYTEDAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEI 234
           EKNYTEDAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEI
Sbjct: 181 EKNYTEDAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEI 240

Query: 235 EKEKEEAEKKKSKKSV 250
           EKEKEEAEKKKSKKSV
Sbjct: 241 EKEKEEAEKKKSKKSV 256


>gi|4506189 proteasome alpha 7 subunit [Homo sapiens]
          Length = 248

 Score =  416 bits (1068), Expect = e-116
 Identities = 208/245 (84%), Positives = 228/245 (93%)

Query: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKI 64
           YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVG+RG +IVVLGVEKKSVAKLQDERTVRKI
Sbjct: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62

Query: 65  CALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 124
           CALDD+VCMAFAGLTADAR+VINRARVECQSH+LTVEDPVTVEYITR+IA+LKQ+YTQSN
Sbjct: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122

Query: 125 GRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 184
           GRRPFGISALIVGFD DG  RLYQTDPSGTYHAWKANAIGR AK+VREFLEKNYT++AI 
Sbjct: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 182

Query: 185 SDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKEEAEKK 244
           +D   IKL IKALLEVVQSGGKNIELA++RR+Q LK+ + +E+E YV EIEKEKEE EKK
Sbjct: 183 TDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKK 242

Query: 245 KSKKS 249
           K KK+
Sbjct: 243 KQKKA 247


>gi|68303565 proteasome alpha 8 subunit isoform 3 [Homo sapiens]
          Length = 212

 Score =  392 bits (1008), Expect = e-109
 Identities = 212/250 (84%), Positives = 212/250 (84%), Gaps = 38/250 (15%)

Query: 1   MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT 60
           MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRG                     
Sbjct: 1   MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRG--------------------- 39

Query: 61  VRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKY 120
                            LTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKY
Sbjct: 40  -----------------LTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKY 82

Query: 121 TQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTE 180
           TQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTE
Sbjct: 83  TQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTE 142

Query: 181 DAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKEE 240
           DAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKEE
Sbjct: 143 DAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKEE 202

Query: 241 AEKKKSKKSV 250
           AEKKKSKKSV
Sbjct: 203 AEKKKSKKSV 212


>gi|156713442 proteasome alpha 4 subunit isoform 1 [Homo sapiens]
          Length = 261

 Score =  169 bits (427), Expect = 3e-42
 Identities = 93/255 (36%), Positives = 151/255 (59%), Gaps = 8/255 (3%)

Query: 1   MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT 60
           M+ RYD   T+FSP+G L+QVEYA EA+    T +GI   + V+L  E++++ KL DE  
Sbjct: 1   MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 60

Query: 61  V-RKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQK 119
              KI  L++ +  + AG+T+DA V+ N  R+  Q + L  ++P+  E +   +  +KQ 
Sbjct: 61  FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120

Query: 120 YTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYT 179
           YTQ  G+RPFG+S L +G+D     +LYQ+DPSG Y  WKA  IG ++      L+++Y 
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 180

Query: 180 EDAIASDSEAIKLAIKAL---LEVVQSGGKNIELAIIRRNQ---PLKMFSAKEVELYVTE 233
           E  +   S A+ LAIK L   ++V +   + +E+A + R      +++   KEVE  + +
Sbjct: 181 EGEMTLKS-ALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK 239

Query: 234 IEKEKEEAEKKKSKK 248
            E+E+ +AE++K +K
Sbjct: 240 HEEEEAKAEREKKEK 254


>gi|4506185 proteasome alpha 4 subunit isoform 1 [Homo sapiens]
          Length = 261

 Score =  169 bits (427), Expect = 3e-42
 Identities = 93/255 (36%), Positives = 151/255 (59%), Gaps = 8/255 (3%)

Query: 1   MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT 60
           M+ RYD   T+FSP+G L+QVEYA EA+    T +GI   + V+L  E++++ KL DE  
Sbjct: 1   MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 60

Query: 61  V-RKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQK 119
              KI  L++ +  + AG+T+DA V+ N  R+  Q + L  ++P+  E +   +  +KQ 
Sbjct: 61  FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120

Query: 120 YTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYT 179
           YTQ  G+RPFG+S L +G+D     +LYQ+DPSG Y  WKA  IG ++      L+++Y 
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 180

Query: 180 EDAIASDSEAIKLAIKAL---LEVVQSGGKNIELAIIRRNQ---PLKMFSAKEVELYVTE 233
           E  +   S A+ LAIK L   ++V +   + +E+A + R      +++   KEVE  + +
Sbjct: 181 EGEMTLKS-ALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK 239

Query: 234 IEKEKEEAEKKKSKK 248
            E+E+ +AE++K +K
Sbjct: 240 HEEEEAKAEREKKEK 254


>gi|4506181 proteasome subunit alpha type 2 [Homo sapiens]
          Length = 234

 Score =  159 bits (401), Expect = 3e-39
 Identities = 96/237 (40%), Positives = 139/237 (58%), Gaps = 7/237 (2%)

Query: 1   MASR-YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDER 59
           MA R Y  ++T FSP G L Q+EYA  AV  G+ +VGI+  N VVL  EKK  + L DER
Sbjct: 1   MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER 60

Query: 60  TVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQK 119
           +V K+  +  H+ + ++G+  D RV+++RAR   Q + L  ++P+    + + +A++ Q+
Sbjct: 61  SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE 120

Query: 120 YTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYT 179
           YTQS G RPFG+S LI G+ ++G   L+Q+DPSG Y AWKA A+G++    + FLEK Y 
Sbjct: 121 YTQSGGVRPFGVSLLICGW-NEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN 179

Query: 180 EDAIASDSEAIKLAIKALLEVV--QSGGKNIELAIIRRNQPLKMFSAKEVELYVTEI 234
           ED    D  AI  AI  L E    Q    NIE+ I       +  +  EV+ Y+  I
Sbjct: 180 EDLELED--AIHTAILTLKESFEGQMTEDNIEVGIC-NEAGFRRLTPTEVKDYLAAI 233


>gi|23110942 proteasome alpha 5 subunit [Homo sapiens]
          Length = 241

 Score =  157 bits (398), Expect = 6e-39
 Identities = 90/239 (37%), Positives = 144/239 (60%), Gaps = 10/239 (4%)

Query: 3   SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVR 62
           S YDR +  FSP+G LFQVEYA EA+K GSTA+GI+ +  V L VEK+  + L +  ++ 
Sbjct: 6   SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIE 65

Query: 63  KICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQ 122
           KI  +D H+  A +GL ADA+ +I++ARVE Q+H  T  + +TVE +T+ ++ L  ++ +
Sbjct: 66  KIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGE 125

Query: 123 SNG-----RRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKN 177
            +       RPFG++ L  G D+ G  +L+  DPSGT+    A AIG +++  +  L++ 
Sbjct: 126 EDADPGAMSRPFGVALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEV 184

Query: 178 YTEDAIASDSEAIKLAIKALLEVVQS--GGKNIELAIIRRNQPLKMFSAKEVELYVTEI 234
           Y +       EAIK ++  L +V++      NIELA ++  Q   MF+ +E+E  + +I
Sbjct: 185 YHKSMTL--KEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 241


>gi|4506179 proteasome alpha 1 subunit isoform 2 [Homo sapiens]
          Length = 263

 Score =  141 bits (355), Expect = 6e-34
 Identities = 78/241 (32%), Positives = 139/241 (57%), Gaps = 7/241 (2%)

Query: 3   SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVR 62
           ++YD  +TV+SP G + Q+EYA EAVK+GS  VG++     VL   K++ ++L   +  +
Sbjct: 4   NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--K 61

Query: 63  KICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQ 122
           KI  +D+H+ ++ AGLTADAR++ N  R EC   +   + P+ V  +   I +  Q  TQ
Sbjct: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query: 123 SNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDA 182
             GRRP+G+  LI G+DD G   ++QT PS  Y   +A +IG  +++ R +LE++ +E  
Sbjct: 122 RYGRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 180

Query: 183 IASDSEAIKLAIKALLEVVQS----GGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEK 238
             + +E +K  ++AL E + +      KN+ + I+ ++    ++   +V  ++  +E+  
Sbjct: 181 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 240

Query: 239 E 239
           +
Sbjct: 241 Q 241


>gi|23110935 proteasome alpha 1 subunit isoform 1 [Homo sapiens]
          Length = 269

 Score =  141 bits (355), Expect = 6e-34
 Identities = 78/241 (32%), Positives = 139/241 (57%), Gaps = 7/241 (2%)

Query: 3   SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVR 62
           ++YD  +TV+SP G + Q+EYA EAVK+GS  VG++     VL   K++ ++L   +  +
Sbjct: 10  NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--K 67

Query: 63  KICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQ 122
           KI  +D+H+ ++ AGLTADAR++ N  R EC   +   + P+ V  +   I +  Q  TQ
Sbjct: 68  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 127

Query: 123 SNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDA 182
             GRRP+G+  LI G+DD G   ++QT PS  Y   +A +IG  +++ R +LE++ +E  
Sbjct: 128 RYGRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 186

Query: 183 IASDSEAIKLAIKALLEVVQS----GGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEK 238
             + +E +K  ++AL E + +      KN+ + I+ ++    ++   +V  ++  +E+  
Sbjct: 187 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 246

Query: 239 E 239
           +
Sbjct: 247 Q 247


>gi|23110944 proteasome alpha 6 subunit [Homo sapiens]
          Length = 246

 Score =  124 bits (312), Expect = 6e-29
 Identities = 72/234 (30%), Positives = 126/234 (53%), Gaps = 4/234 (1%)

Query: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKLQDERTVRK 63
           +DR IT+FSP+G L+QVEYA +A+ +G  T+V +RG +  V+  +KK   KL D  TV  
Sbjct: 9   FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68

Query: 64  ICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQS 123
           +  + +++     G+TAD+R  + RAR E  + K      + V+ + + IA + Q YTQ+
Sbjct: 69  LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128

Query: 124 NGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAI 183
              RP G   +++G D++   ++Y+ DP+G Y  +KA A G        FLEK   +   
Sbjct: 129 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188

Query: 184 ASDSEAIKLAIKALLEVVQSGGK--NIELAIIR-RNQPLKMFSAKEVELYVTEI 234
            +  + ++ AI  L  V+    K   IE+ ++   N   ++ +  E++ ++  +
Sbjct: 189 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 242


>gi|4506183 proteasome alpha 3 subunit isoform 1 [Homo sapiens]
          Length = 255

 Score =  122 bits (305), Expect = 4e-28
 Identities = 79/245 (32%), Positives = 135/245 (55%), Gaps = 8/245 (3%)

Query: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKI 64
           YD + + FSPDG +FQVEYA +AV+  STA+GIR  + VV GVEK  ++KL +E + +++
Sbjct: 8   YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 67

Query: 65  CALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 124
             +D HV MA AGL ADAR + + AR E  + +      + ++++   +A     YT  +
Sbjct: 68  FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 127

Query: 125 GRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 184
             RPFG S ++  +  +  ++LY  DPSG  + +   AIG++ +  +  +EK   ++   
Sbjct: 128 AVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTC 187

Query: 185 SD--SEAIKLAIKALLEVVQSGGKNIELAII-----RRNQPLKMFSAKEVELYVTEIEKE 237
            D   E  K+ I  + + V+     +EL+ +      R++ +     +E E Y  E  KE
Sbjct: 188 RDIVKEVAKI-IYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKE 246

Query: 238 KEEAE 242
           ++E++
Sbjct: 247 EDESD 251


>gi|23110939 proteasome alpha 3 subunit isoform 2 [Homo sapiens]
          Length = 248

 Score =  117 bits (294), Expect = 7e-27
 Identities = 81/245 (33%), Positives = 134/245 (54%), Gaps = 15/245 (6%)

Query: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKI 64
           YD + + FSPDG +FQVEYA +AV+  STA+GIR  + VV GVEK  ++KL +E + +++
Sbjct: 8   YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 67

Query: 65  CALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 124
             +D HV MA AGL ADAR + + AR E  + +      + ++++   +A     YT  +
Sbjct: 68  FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 127

Query: 125 GRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 184
             RPFG S       +DG ++LY  DPSG  + +   AIG++ +  +  +EK   ++   
Sbjct: 128 AVRPFGCSV------NDG-AQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTC 180

Query: 185 SD--SEAIKLAIKALLEVVQSGGKNIELAII-----RRNQPLKMFSAKEVELYVTEIEKE 237
            D   E  K+ I  + + V+     +EL+ +      R++ +     +E E Y  E  KE
Sbjct: 181 RDIVKEVAKI-IYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKE 239

Query: 238 KEEAE 242
           ++E++
Sbjct: 240 EDESD 244


>gi|156713444 proteasome alpha 4 subunit isoform 2 [Homo sapiens]
          Length = 190

 Score =  116 bits (290), Expect = 2e-26
 Identities = 63/179 (35%), Positives = 105/179 (58%), Gaps = 7/179 (3%)

Query: 76  AGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALI 135
           AG+T+DA V+ N  R+  Q + L  ++P+  E +   +  +KQ YTQ  G+RPFG+S L 
Sbjct: 6   AGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLY 65

Query: 136 VGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIK 195
           +G+D     +LYQ+DPSG Y  WKA  IG ++      L+++Y E  +   S A+ LAIK
Sbjct: 66  IGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKS-ALALAIK 124

Query: 196 AL---LEVVQSGGKNIELAIIRRNQ---PLKMFSAKEVELYVTEIEKEKEEAEKKKSKK 248
            L   ++V +   + +E+A + R      +++   KEVE  + + E+E+ +AE++K +K
Sbjct: 125 VLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEK 183


>gi|221316716 proteasome alpha 1 subunit isoform 3 [Homo sapiens]
          Length = 130

 Score = 82.8 bits (203), Expect = 3e-16
 Identities = 42/113 (37%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 3   SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVR 62
           ++YD  +TV+SP G + Q+EYA EAVK+GS  VG++     VL   K++ ++L   +  +
Sbjct: 4   NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--K 61

Query: 63  KICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIAT 115
           KI  +D+H+ ++ AGLTADAR++ N  R EC   +   + P+ V  +   I +
Sbjct: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS 114


>gi|169206322 PREDICTED: similar to hCG30646 [Homo sapiens]
          Length = 272

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 41/172 (23%)

Query: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKLQDERTVRK 63
           +DR + +FSP   L+QV+YA +A+ +G  T+V +R  +  V+   K    KL D RT   
Sbjct: 93  FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRT--H 150

Query: 64  ICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQS 123
           +  +  +      G+TAD+R    RA+ +  + K  +                       
Sbjct: 151 LFKMTKNTGRVITGVTADSRSREQRAQYKAANCKYNI----------------------- 187

Query: 124 NGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLE 175
                         F++ G  R+Y+ D +G Y  +KA A G        FLE
Sbjct: 188 --------------FEELG-PRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224


>gi|239750562 PREDICTED: similar to hCG30646 [Homo sapiens]
          Length = 272

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 41/172 (23%)

Query: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKLQDERTVRK 63
           +DR + +FSP   L+QV+YA +A+ +G  T+V +R  +  V+   K    KL D RT   
Sbjct: 93  FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRT--H 150

Query: 64  ICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQS 123
           +  +  +      G+TAD+R    RA+ +  + K  +                       
Sbjct: 151 LFKMTKNTGRVITGVTADSRSREQRAQYKAANCKYNI----------------------- 187

Query: 124 NGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLE 175
                         F++ G  R+Y+ D +G Y  +KA A G        FLE
Sbjct: 188 --------------FEELG-PRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224


>gi|239744861 PREDICTED: similar to hCG30646 [Homo sapiens]
          Length = 272

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 41/172 (23%)

Query: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKLQDERTVRK 63
           +DR + +FSP   L+QV+YA +A+ +G  T+V +R  +  V+   K    KL D RT   
Sbjct: 93  FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRT--H 150

Query: 64  ICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQS 123
           +  +  +      G+TAD+R    RA+ +  + K  +                       
Sbjct: 151 LFKMTKNTGRVITGVTADSRSREQRAQYKAANCKYNI----------------------- 187

Query: 124 NGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLE 175
                         F++ G  R+Y+ D +G Y  +KA A G        FLE
Sbjct: 188 --------------FEELG-PRVYKCDAAGYYCGFKATAAGVKQAESTSFLE 224


>gi|4506191 proteasome beta 10 subunit proprotein [Homo sapiens]
          Length = 273

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 10/192 (5%)

Query: 27  AVKKGSTAVGIRGTNIVVLGVEKKSVA-KLQDERTVRKICALDDHVCMAFAGLTADARVV 85
           A K G+T  G+   + V+LG + ++    +  +++  KI  +   +    AG+ ADA + 
Sbjct: 35  ARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMT 94

Query: 86  INRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISR 145
                 + + H L+      V  +TR +     +Y    G      ++LIVG  D    +
Sbjct: 95  TRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVG------ASLIVGGVDLTGPQ 148

Query: 146 LYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAI--ASDSEAIKLAIKALLEVVQS 203
           LY   P G+Y      A+G         LE  +  +    A+    ++     +L  + S
Sbjct: 149 LYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGS 208

Query: 204 GGKNIELAIIRR 215
           GG N++  +I +
Sbjct: 209 GG-NVDACVITK 219


>gi|23110932 proteasome beta 9 subunit isoform 2 proprotein [Homo
           sapiens]
          Length = 209

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 28  VKKGSTAVGIRGTNIVVLGVEKK-SVAKLQDERTVRKICALDDHVCMAFAGLTADARVVI 86
           V  G+T + +     VV+G + + S  +    R   K+  L + +  A +G  ADA+ V 
Sbjct: 7   VHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVA 66

Query: 87  NRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRL 146
           + A  + + H + +E+P  V      +  +  KY     R       ++ G+D     ++
Sbjct: 67  DMAAYQLELHGIELEEPPLVLAAANVVRNISYKY-----REDLSAHLMVAGWDQREGGQV 121

Query: 147 YQT 149
           Y T
Sbjct: 122 YGT 124


>gi|4506205 proteasome beta 9 subunit isoform 1 proprotein [Homo
           sapiens]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 28  VKKGSTAVGIRGTNIVVLGVEKK-SVAKLQDERTVRKICALDDHVCMAFAGLTADARVVI 86
           V  G+T + +     VV+G + + S  +    R   K+  L + +  A +G  ADA+ V 
Sbjct: 17  VHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVA 76

Query: 87  NRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRL 146
           + A  + + H + +E+P  V      +  +  KY     R       ++ G+D     ++
Sbjct: 77  DMAAYQLELHGIELEEPPLVLAAANVVRNISYKY-----REDLSAHLMVAGWDQREGGQV 131

Query: 147 YQT 149
           Y T
Sbjct: 132 YGT 134


>gi|4506201 proteasome beta 5 subunit isoform 1 [Homo sapiens]
          Length = 263

 Score = 36.6 bits (83), Expect = 0.021
 Identities = 38/205 (18%), Positives = 90/205 (43%), Gaps = 13/205 (6%)

Query: 31  GSTAVGIRGTNIVVLGVEKKSVAKLQ-DERTVRKICALDDHVCMAFAGLTADARVVINRA 89
           G+T +  +  + V++  + ++ A      +TV+K+  ++ ++    AG  AD        
Sbjct: 59  GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 118

Query: 90  RVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQT 149
             +C+ ++L  ++ ++V   ++ +A +  +Y          +  +I G+D  G   LY  
Sbjct: 119 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMG----LSMGTMICGWDKRG-PGLYYV 173

Query: 150 DPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEV----VQSGG 205
           D  G   +    ++G  +      +++ Y+ D      +A  LA +A+ +       SGG
Sbjct: 174 DSEGNRISGATFSVGSGSVYAYGVMDRGYSYD--LEVEQAYDLARRAIYQATYRDAYSGG 231

Query: 206 KNIELAIIRRNQPLKMFSAKEVELY 230
             + L  +R +  +++ S    +L+
Sbjct: 232 A-VNLYHVREDGWIRVSSDNVADLH 255


>gi|70980531 GGA binding partner [Homo sapiens]
          Length = 441

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 175 EKNYTEDAIASDSEAIKLAIK-ALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTE 233
           E+   ++A+ S ++  K A+K A+L+VV+   KN+E A     +  K   AK+ E    E
Sbjct: 295 ERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQE 354

Query: 234 IEKEKEEAEKKKSKKSV 250
           I+K  +E ++K S+++V
Sbjct: 355 IQKAIQE-QRKISQETV 370


>gi|4506193 proteasome beta 1 subunit [Homo sapiens]
          Length = 241

 Score = 33.1 bits (74), Expect = 0.23
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 5/149 (3%)

Query: 28  VKKGSTAVGIRGTNIVVLGVEKK-SVAKLQDERTVRKICALDDHVCMAFAGLTADARVVI 86
           V  G T + I G +  ++  + + S       R   K   L D   +  +G   D   + 
Sbjct: 34  VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 93

Query: 87  NRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRL 146
                  + +K +    +T   I   ++T+      S    P+ +  +I G D++G   +
Sbjct: 94  KIIEARLKMYKHSNNKAMTTGAIAAMLSTI----LYSRRFFPYYVYNIIGGLDEEGKGAV 149

Query: 147 YQTDPSGTYHAWKANAIGRSAKTVREFLE 175
           Y  DP G+Y      A G ++  ++  L+
Sbjct: 150 YSFDPVGSYQRDSFKAGGSASAMLQPLLD 178


>gi|222144262 proteasome beta 5 subunit isoform 3 [Homo sapiens]
          Length = 203

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 20/113 (17%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 31  GSTAVGIRGTNIVVLGVEKKSVAKLQ-DERTVRKICALDDHVCMAFAGLTADARVVINRA 89
           G+T +  +  + V++  + ++ A      +TV+K+  ++ ++    AG  AD        
Sbjct: 59  GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 118

Query: 90  RVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDG 142
             +C+ ++L  ++ ++V   ++ +A +  +Y          +  +I G+D  G
Sbjct: 119 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMG----LSMGTMICGWDKRG 167


>gi|102467242 inner centromere protein antigens 135/155kDa isoform 2
           [Homo sapiens]
          Length = 914

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 197 LLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKEEAEKKKSKK 248
           +L    S  +++  + I+RN PL+M   KE E    E  + KEEAE+ + +K
Sbjct: 504 MLMTPTSAPRSVMKSFIKRNTPLRM-DPKEKERQRLENLRRKEEAEQLRRQK 554


>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
          Length = 1684

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 11/63 (17%)

Query: 194 IKALLEVVQSGGKNIELAIIR---------RNQPLKMFSAKEVELYVTEIEKEKEEAEKK 244
           +K LLE  +   +  EL +++         +N PL   S KE+E  +  +EKE +E E+K
Sbjct: 909 LKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLS--SVKELEEKIENLEKECKEKEEK 966

Query: 245 KSK 247
            +K
Sbjct: 967 INK 969


>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
          Length = 2479

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 185 SDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKEEAEK 243
           +D+  I L+   + E+     +N+ + + R  Q L    A+EVEL + E+EK  EE  K
Sbjct: 25  ADNLLISLSKVEVNELKSEKQENV-IHLFRITQSLMKMKAQEVELALEEVEKAGEEQAK 82


>gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]
          Length = 587

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 14/134 (10%)

Query: 111 RFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTV 170
           R I TL++ +   NG    GI+AL   F  + + R+   +   T+    A A+  + KT+
Sbjct: 205 RVIGTLEEVHMPQNGINHPGITALAQAFAVNPLLRVINLN-DNTFTEKGAVAMAETLKTL 263

Query: 171 REFLEKNYTEDAIAS-DSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVEL 229
           R+    N+ +  + S  + AI  AI+  L  ++    N+    I+R          +  L
Sbjct: 264 RQVEVINFGDCLVRSKGAVAIADAIRGGLPKLKE--LNLSFCEIKR----------DAAL 311

Query: 230 YVTEIEKEKEEAEK 243
            V E   +K E EK
Sbjct: 312 AVAEAMADKAELEK 325


>gi|21361831 partitioning-defective protein 3 homolog [Homo sapiens]
          Length = 1356

 Score = 28.1 bits (61), Expect = 7.5
 Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 168  KTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPL-KMFSAKE 226
            ++ R  ++K+Y + A+  D E ++   +   E  +SG +++  A  + +  L +  +  +
Sbjct: 923  ESFRAAIDKSYDKPAVDDDDEGMETLEEDTEESSRSGRESVSTASDQPSHSLERQMNGNQ 982

Query: 227  VELYVTEIEKEKEEAEKKKSK 247
             +   T+ +K+K   EKKK +
Sbjct: 983  EKGDKTDRKKDKTGKEKKKDR 1003


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,999,404
Number of Sequences: 37866
Number of extensions: 311462
Number of successful extensions: 1535
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1478
Number of HSP's gapped (non-prelim): 54
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press