Search of human proteins with 68163572

Search of human proteins with 68163572

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|68163572 hypothetical protein LOC84077 [Homo sapiens]
         (904 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|68163572 hypothetical protein LOC84077 [Homo sapiens]             1811   0.0  
gi|87298939 hypothetical protein LOC131831 [Homo sapiens]              67   6e-11
gi|7662486 ring finger protein 44 [Homo sapiens]                       42   0.002
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    39   0.022
gi|148276998 zinc finger protein 628 [Homo sapiens]                    38   0.037
gi|24797153 faciogenital dysplasia protein [Homo sapiens]              38   0.049
gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]           37   0.083
gi|54792098 erbB-2 isoform b [Homo sapiens]                            36   0.14 
gi|54792096 erbB-2 isoform a [Homo sapiens]                            36   0.14 
gi|210147567 hypothetical protein LOC220081 [Homo sapiens]             36   0.18 
gi|153792074 proline rich 12 [Homo sapiens]                            36   0.18 
gi|239755410 PREDICTED: hypothetical protein [Homo sapiens]            35   0.41 
gi|169201378 PREDICTED: hypothetical protein [Homo sapiens]            35   0.41 
gi|169188835 PREDICTED: hypothetical protein [Homo sapiens]            35   0.41 
gi|29788778 proline rich membrane anchor 1 precursor [Homo sapiens]    34   0.54 
gi|52485606 formin-like 2 [Homo sapiens]                               34   0.54 
gi|61743942 abl-interactor 1 isoform a [Homo sapiens]                  34   0.54 
gi|239743293 PREDICTED: mucin 12 [Homo sapiens]                        34   0.70 
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi...    34   0.70 
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap...    34   0.70 
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi...    34   0.70 
gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapi...    34   0.70 
gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapi...    34   0.70 
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi...    34   0.70 
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi...    34   0.70 
gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapi...    34   0.70 
gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens]            34   0.70 
gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens]            34   0.70 
gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens]            34   0.70 
gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens]            34   0.70 

>gi|68163572 hypothetical protein LOC84077 [Homo sapiens]
          Length = 904

 Score = 1811 bits (4691), Expect = 0.0
 Identities = 904/904 (100%), Positives = 904/904 (100%)

Query: 1   MSYIKSNLELYQQYTAMAPKLLARISKLLMICQNAGISVPKGIRNIFEFTWEELISDPSV 60
           MSYIKSNLELYQQYTAMAPKLLARISKLLMICQNAGISVPKGIRNIFEFTWEELISDPSV
Sbjct: 1   MSYIKSNLELYQQYTAMAPKLLARISKLLMICQNAGISVPKGIRNIFEFTWEELISDPSV 60

Query: 61  PTPSDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRPVLLATTGAAKRSTLS 120
           PTPSDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRPVLLATTGAAKRSTLS
Sbjct: 61  PTPSDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRPVLLATTGAAKRSTLS 120

Query: 121 PTMARQVRTHQETLNRFQQQSIHLLTELLRLKMKAMVESMSVGANPLDITRRFVEASQLL 180
           PTMARQVRTHQETLNRFQQQSIHLLTELLRLKMKAMVESMSVGANPLDITRRFVEASQLL
Sbjct: 121 PTMARQVRTHQETLNRFQQQSIHLLTELLRLKMKAMVESMSVGANPLDITRRFVEASQLL 180

Query: 181 HLNAKEMAFNCLISTAGRSGYSSGQLWKESLANMSAIGVNSPYQLIYHSSTACLSFSLSA 240
           HLNAKEMAFNCLISTAGRSGYSSGQLWKESLANMSAIGVNSPYQLIYHSSTACLSFSLSA
Sbjct: 181 HLNAKEMAFNCLISTAGRSGYSSGQLWKESLANMSAIGVNSPYQLIYHSSTACLSFSLSA 240

Query: 241 GKEAKKKIGKSRTTEDVSMPPLHRGVGTPANSLEFSDPCPEAREKLQELCRHIEAERTTW 300
           GKEAKKKIGKSRTTEDVSMPPLHRGVGTPANSLEFSDPCPEAREKLQELCRHIEAERTTW
Sbjct: 241 GKEAKKKIGKSRTTEDVSMPPLHRGVGTPANSLEFSDPCPEAREKLQELCRHIEAERTTW 300

Query: 301 KGRNISYPMILRNYKAKMPSHLMLARKGDSQTPGLHYPPTAGAQTLSPTSHPSSANHHFS 360
           KGRNISYPMILRNYKAKMPSHLMLARKGDSQTPGLHYPPTAGAQTLSPTSHPSSANHHFS
Sbjct: 301 KGRNISYPMILRNYKAKMPSHLMLARKGDSQTPGLHYPPTAGAQTLSPTSHPSSANHHFS 360

Query: 361 QHCQEGKAPKKAFKFHYTFYDGSSFVYYPSGNVAVCQIPTCCRGRTVTCLFNDIPGFSLL 420
           QHCQEGKAPKKAFKFHYTFYDGSSFVYYPSGNVAVCQIPTCCRGRTVTCLFNDIPGFSLL
Sbjct: 361 QHCQEGKAPKKAFKFHYTFYDGSSFVYYPSGNVAVCQIPTCCRGRTVTCLFNDIPGFSLL 420

Query: 421 AVFNTEGQGCVHYNLKTSCPYVLILDEEGGTTNDQQGYVVHKWSWTSRTETLLSLEYKVN 480
           AVFNTEGQGCVHYNLKTSCPYVLILDEEGGTTNDQQGYVVHKWSWTSRTETLLSLEYKVN
Sbjct: 421 AVFNTEGQGCVHYNLKTSCPYVLILDEEGGTTNDQQGYVVHKWSWTSRTETLLSLEYKVN 480

Query: 481 EEMKLKVLGQDSITVTFTSLNETVTLTVSANNCPHGMAYDKRLNRRISNMDDKVYKMSRA 540
           EEMKLKVLGQDSITVTFTSLNETVTLTVSANNCPHGMAYDKRLNRRISNMDDKVYKMSRA
Sbjct: 481 EEMKLKVLGQDSITVTFTSLNETVTLTVSANNCPHGMAYDKRLNRRISNMDDKVYKMSRA 540

Query: 541 LAEIKKRFQKTVTQFINSILLAAGLFTIEYPTKKEEEEFVRFKMRSRTHPERLPKLSLYS 600
           LAEIKKRFQKTVTQFINSILLAAGLFTIEYPTKKEEEEFVRFKMRSRTHPERLPKLSLYS
Sbjct: 541 LAEIKKRFQKTVTQFINSILLAAGLFTIEYPTKKEEEEFVRFKMRSRTHPERLPKLSLYS 600

Query: 601 GESLLRSQSGHLESSIAETLKDEPESAPVSPVRKTTKIHTKAKVTSRGKAREGRSPTRWA 660
           GESLLRSQSGHLESSIAETLKDEPESAPVSPVRKTTKIHTKAKVTSRGKAREGRSPTRWA
Sbjct: 601 GESLLRSQSGHLESSIAETLKDEPESAPVSPVRKTTKIHTKAKVTSRGKAREGRSPTRWA 660

Query: 661 ALPSDCPLVLRKLMLKEDTRAGCKCLVKAPLVSDVELERFLLAPRDPSQVLVFGIISSQN 720
           ALPSDCPLVLRKLMLKEDTRAGCKCLVKAPLVSDVELERFLLAPRDPSQVLVFGIISSQN
Sbjct: 661 ALPSDCPLVLRKLMLKEDTRAGCKCLVKAPLVSDVELERFLLAPRDPSQVLVFGIISSQN 720

Query: 721 YTSTGQLQWLLNTLYNHQQRGRGSPCIQCRYDSYRLLQYDLDSPLQEDPPLMVKKNSVVQ 780
           YTSTGQLQWLLNTLYNHQQRGRGSPCIQCRYDSYRLLQYDLDSPLQEDPPLMVKKNSVVQ
Sbjct: 721 YTSTGQLQWLLNTLYNHQQRGRGSPCIQCRYDSYRLLQYDLDSPLQEDPPLMVKKNSVVQ 780

Query: 781 GMILMFAGGKLIFGGRVLNGYGLSKQNLLKQIFRSQQDYKMGYFLPDDYKFSVPNSVLSL 840
           GMILMFAGGKLIFGGRVLNGYGLSKQNLLKQIFRSQQDYKMGYFLPDDYKFSVPNSVLSL
Sbjct: 781 GMILMFAGGKLIFGGRVLNGYGLSKQNLLKQIFRSQQDYKMGYFLPDDYKFSVPNSVLSL 840

Query: 841 EDSESVKKAESEDIQGSSSSLALEDYVEKELSLEAEKTREPEVELHPLSRDSKITSWKKQ 900
           EDSESVKKAESEDIQGSSSSLALEDYVEKELSLEAEKTREPEVELHPLSRDSKITSWKKQ
Sbjct: 841 EDSESVKKAESEDIQGSSSSLALEDYVEKELSLEAEKTREPEVELHPLSRDSKITSWKKQ 900

Query: 901 ASKK 904
           ASKK
Sbjct: 901 ASKK 904


>gi|87298939 hypothetical protein LOC131831 [Homo sapiens]
          Length = 663

 Score = 67.4 bits (163), Expect = 6e-11
 Identities = 41/146 (28%), Positives = 80/146 (54%), Gaps = 12/146 (8%)

Query: 370 KKAFKFHYTFYDGSSFVYYPSGNVAVCQIPTCCRGRTVTCLF-NDIP-GFSLLAVFNTEG 427
           K   KF  +F DG++ ++YPSGN+A+ ++P    G   TC+   D+P   ++LAV ++ G
Sbjct: 431 KHGSKFLTSFPDGTTQIFYPSGNLAIIRVPNKVNG--FTCIVQEDMPTNPAILAVLDSSG 488

Query: 428 QGCVHYNLKTSCPYVLILDEEGGTTNDQQGYVVHKWSWTSRTETLLSLEYK-----VNEE 482
           +   ++       Y+ IL   GG  +DQ G  +  W+W++   +   + +K     +N  
Sbjct: 489 RSSCYHPNGNVWVYINIL---GGQYSDQAGNRIRAWNWSNSITSSPFVSFKPVFLALNRY 545

Query: 483 MKLKVLGQDSITVTFTSLNETVTLTV 508
           + +++L QD I++TF ++ +   ++V
Sbjct: 546 IGVRILEQDKISITFLAMGQQARISV 571


>gi|7662486 ring finger protein 44 [Homo sapiens]
          Length = 432

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 58  PSVPT---PSDILGLEVSFGAPLVVLMEPTF-VQVPTLKKPLPPPPPAPPRP 105
           PSVP    P D L  E+SFG P   +M      Q   L++PLPPPPP PP P
Sbjct: 247 PSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPP 298


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
           sapiens]
          Length = 2715

 Score = 38.9 bits (89), Expect = 0.022
 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 13/75 (17%)

Query: 56  SDPSVPTPSDILGLEVSFGAPLV-----VLMEPTFVQVPTLKKPLPPPPPAPPRPVLLAT 110
           S P  PTP        S   PL      +L EPTF +  +L + LPPPPPAPP P   + 
Sbjct: 582 SPPRAPTPP-------STPVPLPEKRRSILREPTF-RWTSLTRELPPPPPAPPPPPAPSP 633

Query: 111 TGAAKRSTLSPTMAR 125
             A   S+  P + R
Sbjct: 634 PPAPATSSRRPLLLR 648


>gi|148276998 zinc finger protein 628 [Homo sapiens]
          Length = 1055

 Score = 38.1 bits (87), Expect = 0.037
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 9/56 (16%)

Query: 58  PSVPTPSDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRPVLLATTGA 113
           P+ P     L ++ + G  L+    P+ VQ PT     PPPPPAPP+ +LL ++ A
Sbjct: 700 PAAPNSQTFLLVQTAQGLQLI----PSSVQPPT-----PPPPPAPPKLILLPSSSA 746


>gi|24797153 faciogenital dysplasia protein [Homo sapiens]
          Length = 961

 Score = 37.7 bits (86), Expect = 0.049
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 52  EELISDPSVPT--PSDILG-LEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRPVLL 108
           + L SDP  PT  PS     L+ + G    V  +P+++Q+P +  PL P PP P RP+  
Sbjct: 131 QRLRSDPGPPTETPSQRPSPLKRAPGPKPQVPPKPSYLQMPRMPPPLEPIPPPPSRPLPA 190

Query: 109 ---ATTGAAKRSTLSPTMA 124
                 G A R+  SP+ A
Sbjct: 191 DPRVAKGLAPRAEASPSSA 209


>gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]
          Length = 666

 Score = 37.0 bits (84), Expect = 0.083
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 7/49 (14%)

Query: 89  PTLKKPLPPPPPAPPRP-------VLLATTGAAKRSTLSPTMARQVRTH 130
           P L  PLPPPPP PP P       +LL   GAA+ + +S +++     H
Sbjct: 16  PALAGPLPPPPPPPPPPLLPLLPLLLLLLLGAAEGARVSSSLSTTHHVH 64


>gi|54792098 erbB-2 isoform b [Homo sapiens]
          Length = 1225

 Score = 36.2 bits (82), Expect = 0.14
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 57   DPSVPTPSDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRPVLLATTGAAKR 116
            DP+VP PS+  G    + APL    +P +V  P + +P PP P   P P         +R
Sbjct: 1085 DPTVPLPSETDG----YVAPLTCSPQPEYVNQPDV-RPQPPSPREGPLPAARPAGATLER 1139

Query: 117  -STLSP 121
              TLSP
Sbjct: 1140 PKTLSP 1145


>gi|54792096 erbB-2 isoform a [Homo sapiens]
          Length = 1255

 Score = 36.2 bits (82), Expect = 0.14
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 57   DPSVPTPSDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRPVLLATTGAAKR 116
            DP+VP PS+  G    + APL    +P +V  P + +P PP P   P P         +R
Sbjct: 1115 DPTVPLPSETDG----YVAPLTCSPQPEYVNQPDV-RPQPPSPREGPLPAARPAGATLER 1169

Query: 117  -STLSP 121
              TLSP
Sbjct: 1170 PKTLSP 1175


>gi|210147567 hypothetical protein LOC220081 [Homo sapiens]
          Length = 696

 Score = 35.8 bits (81), Expect = 0.18
 Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 50/237 (21%)

Query: 309 MILRNYKAKMPSHLMLARKGDSQ--------TPGLHYPPTAGAQTLSPTSHPSSANHHFS 360
           M+ +NY+    + L + R+ ++Q        T  L   PT           P    HH  
Sbjct: 396 MLKKNYEKFKETILRIKRRREAQKLTEMTSFTFHLMSKPTPEKPETEEIQKPQRVVHHRK 455

Query: 361 Q--------------HCQEGKA---PKKAFKFHYTFYDGSSFVYYPSGNVAVCQIPTCCR 403
           +              H  +GK    P K   +   F DG+  ++YPSGN+A+  +    +
Sbjct: 456 KLERDKEWIQKKTVVHQGDGKLILYPNKNV-YQILFPDGTGQIHYPSGNLAMLILYAKMK 514

Query: 404 GRTVTCLFNDIPGFSLLAVFNTEGQGC-------VHYNLKTSCPYVLILDEEGGTTNDQQ 456
             T   L + + G  + A+ N  G          +  NL ++  Y    D+         
Sbjct: 515 KFTYIILEDSLEG-RIRALINNSGNATFYDENSDIWLNLSSNLGYYFPKDKR-------- 565

Query: 457 GYVVHKWSWTS-----RTETLLSLEYKVNEEMKLKVLGQDSITVTFTSLNETVTLTV 508
                 W+W +         +  +  K+NE +++++  QD I   FT   + + L +
Sbjct: 566 ---QKAWNWWNLNIHVHAPPVQPISLKINEYIQVQIRSQDKIIFCFTYEQKQICLNL 619


>gi|153792074 proline rich 12 [Homo sapiens]
          Length = 2036

 Score = 35.8 bits (81), Expect = 0.18
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 7/55 (12%)

Query: 59   SVPTPSDILGLEV--SFGAPLVVLME----PTFVQVPTLKKPLPPPPPAPPRPVL 107
            +VP P  + GL    S G P   L+E    PT    PT  +P PPPPP PP+P L
Sbjct: 1429 AVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPT-PQPQPPPPPPPPQPAL 1482


>gi|239755410 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score = 34.7 bits (78), Expect = 0.41
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 89  PTLKKPLP-PPPPAPPRPVLLATTGAAKRSTLSPTMARQVRTHQETLNR 136
           P L++PLP PPPPAPPRP        +  +   P  A +      TL R
Sbjct: 123 PHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRR 171


>gi|169201378 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score = 34.7 bits (78), Expect = 0.41
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 89  PTLKKPLP-PPPPAPPRPVLLATTGAAKRSTLSPTMARQVRTHQETLNR 136
           P L++PLP PPPPAPPRP        +  +   P  A +      TL R
Sbjct: 123 PHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRR 171


>gi|169188835 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score = 34.7 bits (78), Expect = 0.41
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 89  PTLKKPLP-PPPPAPPRPVLLATTGAAKRSTLSPTMARQVRTHQETLNR 136
           P L++PLP PPPPAPPRP        +  +   P  A +      TL R
Sbjct: 123 PHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRR 171


>gi|29788778 proline rich membrane anchor 1 precursor [Homo sapiens]
          Length = 153

 Score = 34.3 bits (77), Expect = 0.54
 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 94  PLPPPPPAPPRPVLLATTGAAKRSTLSPT 122
           PLPPPPP PP P LL  +  A  ST  PT
Sbjct: 59  PLPPPPPPPPPPRLL--SAPAPNSTSCPT 85


>gi|52485606 formin-like 2 [Homo sapiens]
          Length = 1092

 Score = 34.3 bits (77), Expect = 0.54
 Identities = 22/66 (33%), Positives = 26/66 (39%)

Query: 59  SVPTPSDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRPVLLATTGAAKRST 118
           S P P     L  S   P  V   P    +P    P PPPPP PP P      G A  + 
Sbjct: 523 SGPLPPPPPPLPPSSDTPETVQNGPVTPPMPPPPPPPPPPPPPPPPPPPPPLPGPAAETV 582

Query: 119 LSPTMA 124
            +P +A
Sbjct: 583 PAPPLA 588


>gi|61743942 abl-interactor 1 isoform a [Homo sapiens]
          Length = 508

 Score = 34.3 bits (77), Expect = 0.54
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 64  SDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRPV--LLATTGAAKRSTLSP 121
           S  +G+ ++   P    + P  + VP      P PP AP  PV  ++A  G+A  S    
Sbjct: 254 SSSIGIPIAVPTPSPPTIGPENISVPPPSGAPPAPPLAPLLPVSTVIAAPGSAPGSQYG- 312

Query: 122 TMARQVRTHQET 133
           TM RQ+  H  T
Sbjct: 313 TMTRQISRHNST 324


>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
          Length = 5478

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 44/179 (24%), Positives = 68/179 (37%), Gaps = 33/179 (18%)

Query: 227  YHSS---TACLSF---SLSAGKEAKKKIGKSRTTEDVSMPP------------LHRGVGT 268
            YHSS   T  + F   S ++G+  + +   S TT  +S PP             H   G+
Sbjct: 1915 YHSSPGSTQTMHFPESSTASGRSEESRTSHSSTTHTISSPPSTTSALVEEPTSYHSSPGS 1974

Query: 269  PANSLEFSDPCPEAREKLQELCRHIEAERT---TWKGRNISYPMILRNYKAKMPSHLM-- 323
             A +  F D    +    +    H   + T       R+ +  ++  +  + + S  M  
Sbjct: 1975 TATT-HFPDSSTTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSPISSGSMET 2033

Query: 324  LARKGDSQTPGL-------HYPPTAGAQTLSPTSHPSS--ANHHFSQHCQEGKAPKKAF 373
             A  G + TPGL       H  P + A TLSP S  SS  +    + H + G     AF
Sbjct: 2034 TALPGSTTTPGLSEKSTTFHSSPRSPATTLSPASTTSSGVSEESTTSHSRPGSTHTTAF 2092


>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapiens]
          Length = 1955

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 56   SDPSVPTP---SDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRP 105
            S PS+P P        L VS   P      PT   +P    PLPPPPP+ P P
Sbjct: 1782 SPPSIPLPLPPPTFFPLSVSTSGP------PTPPLLPPFPTPLPPPPPSIPCP 1828


>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
          Length = 1932

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 56   SDPSVPTP---SDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRP 105
            S PS+P P        L VS   P      PT   +P    PLPPPPP+ P P
Sbjct: 1759 SPPSIPLPLPPPTFFPLSVSTSGP------PTPPLLPPFPTPLPPPPPSIPCP 1805


>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
          Length = 1935

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 56   SDPSVPTP---SDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRP 105
            S PS+P P        L VS   P      PT   +P    PLPPPPP+ P P
Sbjct: 1762 SPPSIPLPLPPPTFFPLSVSTSGP------PTPPLLPPFPTPLPPPPPSIPCP 1808


>gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapiens]
          Length = 1915

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 56   SDPSVPTP---SDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRP 105
            S PS+P P        L VS   P      PT   +P    PLPPPPP+ P P
Sbjct: 1742 SPPSIPLPLPPPTFFPLSVSTSGP------PTPPLLPPFPTPLPPPPPSIPCP 1788


>gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapiens]
          Length = 1952

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 56   SDPSVPTP---SDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRP 105
            S PS+P P        L VS   P      PT   +P    PLPPPPP+ P P
Sbjct: 1779 SPPSIPLPLPPPTFFPLSVSTSGP------PTPPLLPPFPTPLPPPPPSIPCP 1825


>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapiens]
          Length = 1886

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 56   SDPSVPTP---SDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRP 105
            S PS+P P        L VS   P      PT   +P    PLPPPPP+ P P
Sbjct: 1713 SPPSIPLPLPPPTFFPLSVSTSGP------PTPPLLPPFPTPLPPPPPSIPCP 1759


>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapiens]
          Length = 1957

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 56   SDPSVPTP---SDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRP 105
            S PS+P P        L VS   P      PT   +P    PLPPPPP+ P P
Sbjct: 1784 SPPSIPLPLPPPTFFPLSVSTSGP------PTPPLLPPFPTPLPPPPPSIPCP 1830


>gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapiens]
          Length = 1962

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 56   SDPSVPTP---SDILGLEVSFGAPLVVLMEPTFVQVPTLKKPLPPPPPAPPRP 105
            S PS+P P        L VS   P      PT   +P    PLPPPPP+ P P
Sbjct: 1789 SPPSIPLPLPPPTFFPLSVSTSGP------PTPPLLPPFPTPLPPPPPSIPCP 1835


>gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens]
          Length = 432

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 321 HLMLARKGDSQTPGLHYPPTAGAQTLSPTSHPSSANHHFSQHCQEGKAPKKAFKFHYTFY 380
           HL  A++   + P   +PP    + L P +HP   N                   H   +
Sbjct: 63  HLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPPQQN-------------AVMVDIHDQLH 109

Query: 381 DGSSFVYYPSGNVAVCQIPTCCRGRTVTCLFNDIPGFSLL 420
            G+  V Y    VA   IP C       C    +PG S++
Sbjct: 110 QGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVV 149


>gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens]
          Length = 432

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 321 HLMLARKGDSQTPGLHYPPTAGAQTLSPTSHPSSANHHFSQHCQEGKAPKKAFKFHYTFY 380
           HL  A++   + P   +PP    + L P +HP   N                   H   +
Sbjct: 63  HLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPPQQN-------------AVMVDIHDQLH 109

Query: 381 DGSSFVYYPSGNVAVCQIPTCCRGRTVTCLFNDIPGFSLL 420
            G+  V Y    VA   IP C       C    +PG S++
Sbjct: 110 QGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVV 149


>gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens]
          Length = 465

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 321 HLMLARKGDSQTPGLHYPPTAGAQTLSPTSHPSSANHHFSQHCQEGKAPKKAFKFHYTFY 380
           HL  A++   + P   +PP    + L P +HP   N                   H   +
Sbjct: 96  HLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPPQQN-------------AVMVDIHDQLH 142

Query: 381 DGSSFVYYPSGNVAVCQIPTCCRGRTVTCLFNDIPGFSLL 420
            G+  V Y    VA   IP C       C    +PG S++
Sbjct: 143 QGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVV 182


>gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens]
          Length = 432

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 321 HLMLARKGDSQTPGLHYPPTAGAQTLSPTSHPSSANHHFSQHCQEGKAPKKAFKFHYTFY 380
           HL  A++   + P   +PP    + L P +HP   N                   H   +
Sbjct: 63  HLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPPQQN-------------AVMVDIHDQLH 109

Query: 381 DGSSFVYYPSGNVAVCQIPTCCRGRTVTCLFNDIPGFSLL 420
            G+  V Y    VA   IP C       C    +PG S++
Sbjct: 110 QGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVV 149


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,757,902
Number of Sequences: 37866
Number of extensions: 1753542
Number of successful extensions: 14707
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 13239
Number of HSP's gapped (non-prelim): 1159
length of query: 904
length of database: 18,247,518
effective HSP length: 111
effective length of query: 793
effective length of database: 14,044,392
effective search space: 11137202856
effective search space used: 11137202856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.