Guide to the Human Genome
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Name: LOC100128304 Sequence: fasta or formatted (183aa) NCBI GI: 169188835
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {183aa} PREDICTED: hypothetical protein
alt prot {183aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         17           3
 C cysteine            0.5          1           1
 D aspartate           2.2          4           1
 E glutamate           2.2          4           1
 F phenylalanine       3.3          6           1
 G glycine             4.9          9           1
 H histidine           4.4          8           1
 I isoleucine          2.2          4           1
 K lysine              1.6          3           1
 L leucine            12.0         22           2
 M methionine          1.1          2           1
 N asparagine          2.7          5           1
 P proline            15.3         28           4
 Q glutamine           3.8          7           1
 R arginine           15.8         29           3
 S serine              7.1         13           3
 T threonine           3.8          7           1
 V valine              5.5         10           1
 W tryptophan          1.6          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128304          1.000   PREDICTED: hypothetical protein 
LOC100128304          0.994   PREDICTED: hypothetical protein 
CHD3                  0.039   chromodomain helicase DNA binding protein 3 isoform...
C9orf75               0.037   hypothetical protein LOC286262 isoform 2 
C9orf75               0.037   hypothetical protein LOC286262 isoform 1 
UBN2                  0.034   ubinuclein 2 
LOC100292387          0.034   PREDICTED: similar to hemicentin 2 
PABPC1                0.034   poly(A) binding protein, cytoplasmic 1 
SOCS7                 0.031   suppressor of cytokine signaling 7 
LOC100134209          0.031   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC728056             0.031   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC731035             0.031   PREDICTED: hypothetical protein 
LOC728056             0.031   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC100288881          0.031   PREDICTED: hypothetical protein XP_002343185 
LOC100293268          0.028   PREDICTED: hypothetical protein 
WHAMM                 0.028   WAS protein homolog associated with actin, golgi me...
FLJ20021              0.028   PREDICTED: hypothetical protein 
FLJ20021              0.028   PREDICTED: hypothetical protein 
FLJ20021              0.028   PREDICTED: hypothetical protein 
PRAM1                 0.028   PML-RARA regulated adaptor molecule 1 
MLL4                  0.028   myeloid/lymphoid or mixed-lineage leukemia 4 
C3orf20               0.028   hypothetical protein LOC84077 
FUSSEL18              0.025   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.025   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.025   PREDICTED: functional smad suppressing element 18 [...
WASF2                 0.025   WAS protein family, member 2 
RFNG                  0.025   radical fringe 
MAMLD1                0.025   mastermind-like domain containing 1 
RNF44                 0.025   ring finger protein 44 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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