Guide to the Human Genome
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Name: RNF38 Sequence: fasta or formatted (465aa) NCBI GI: 37577179
Description:

ring finger protein 38 isoform 3

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [515aa] ring finger protein 38 isoform 1
alt prot [432aa] ring finger protein 38 isoform 2
alt prot [432aa] ring finger protein 38 isoform 2
alt prot [432aa] ring finger protein 38 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         26           2
 C cysteine            3.0         14           1
 D aspartate           3.2         15           1
 E glutamate           5.2         24           2
 F phenylalanine       3.7         17           1
 G glycine             3.7         17           2
 H histidine           6.2         29           2
 I isoleucine          2.4         11           1
 K lysine              1.5          7           1
 L leucine             8.4         39           2
 M methionine          1.7          8           1
 N asparagine          3.2         15           2
 P proline            15.9         74           4
 Q glutamine           6.7         31           3
 R arginine            7.1         33           2
 S serine              8.8         41           2
 T threonine           3.9         18           2
 V valine              6.9         32           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 38 isoform 3 
RNF38                 0.991   ring finger protein 38 isoform 1 
RNF38                 0.930   ring finger protein 38 isoform 2 
RNF38                 0.930   ring finger protein 38 isoform 2 
RNF38                 0.930   ring finger protein 38 isoform 2 
RNF44                 0.525   ring finger protein 44 
RNF6                  0.052   ring finger protein 6 
RNF6                  0.052   ring finger protein 6 
RNF6                  0.052   ring finger protein 6 
RNF111                0.052   ring finger protein 111 
RLIM                  0.051   ring finger protein, LIM domain interacting 
RLIM                  0.051   ring finger protein, LIM domain interacting 
RNF13                 0.046   ring finger protein 13 
RNF13                 0.046   ring finger protein 13 
RNF167                0.043   ring finger protein 167 
RNF11                 0.040   ring finger protein 11 
RNF150                0.040   ring finger protein 150 
RNF165                0.038   ring finger protein 165 
RNF215                0.038   ring finger protein 215 
RNF149                0.038   ring finger protein 149 
RNF43                 0.038   ring finger protein 43 
RNF126                0.038   ring finger protein 126 
LOC100290625          0.037   PREDICTED: hypothetical protein XP_002347002 
LOC100289630          0.037   PREDICTED: hypothetical protein XP_002342853 
RNF148                0.036   ring finger protein 148 
RNF128                0.035   ring finger protein 128 isoform 1 
RNF128                0.035   ring finger protein 128 isoform 2 
RNF24                 0.035   ring finger protein 24 isoform 2 
RNF24                 0.035   ring finger protein 24 isoform 1 
RNF24                 0.035   ring finger protein 24 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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