Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RNF38 Sequence: fasta or formatted (432aa) NCBI GI: 37577185
Description:

ring finger protein 38 isoform 2

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [515aa] ring finger protein 38 isoform 1
alt mRNA [432aa] ring finger protein 38 isoform 2
alt prot [465aa] ring finger protein 38 isoform 3
alt mRNA [432aa] ring finger protein 38 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         23           2
 C cysteine            3.0         13           1
 D aspartate           3.0         13           1
 E glutamate           5.3         23           2
 F phenylalanine       3.7         16           1
 G glycine             3.9         17           2
 H histidine           6.5         28           2
 I isoleucine          2.5         11           1
 K lysine              1.2          5           1
 L leucine             8.8         38           2
 M methionine          1.6          7           1
 N asparagine          3.5         15           2
 P proline            15.7         68           4
 Q glutamine           6.9         30           3
 R arginine            7.2         31           2
 S serine              7.6         33           2
 T threonine           3.9         17           2
 V valine              7.2         31           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 38 isoform 2 
RNF38                 1.000   ring finger protein 38 isoform 2 
RNF38                 1.000   ring finger protein 38 isoform 3 
RNF38                 1.000   ring finger protein 38 isoform 2 
RNF38                 1.000   ring finger protein 38 isoform 1 
RNF44                 0.564   ring finger protein 44 
RNF6                  0.056   ring finger protein 6 
RNF6                  0.056   ring finger protein 6 
RNF6                  0.056   ring finger protein 6 
RNF111                0.056   ring finger protein 111 
RLIM                  0.054   ring finger protein, LIM domain interacting 
RLIM                  0.054   ring finger protein, LIM domain interacting 
RNF13                 0.050   ring finger protein 13 
RNF13                 0.050   ring finger protein 13 
RNF167                0.047   ring finger protein 167 
RNF11                 0.043   ring finger protein 11 
RNF150                0.043   ring finger protein 150 
RNF165                0.041   ring finger protein 165 
RNF215                0.041   ring finger protein 215 
RNF149                0.041   ring finger protein 149 
RNF43                 0.041   ring finger protein 43 
RNF126                0.041   ring finger protein 126 
LOC100290625          0.040   PREDICTED: hypothetical protein XP_002347002 
LOC100289630          0.040   PREDICTED: hypothetical protein XP_002342853 
RNF148                0.039   ring finger protein 148 
RNF128                0.038   ring finger protein 128 isoform 1 
RNF128                0.038   ring finger protein 128 isoform 2 
RNF24                 0.038   ring finger protein 24 isoform 2 
RNF24                 0.038   ring finger protein 24 isoform 1 
RNF24                 0.038   ring finger protein 24 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press