Guide to the Human Genome
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Name: C3orf20 Sequence: fasta or formatted (904aa) NCBI GI: 68163572
Description:

hypothetical protein LOC84077

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         53           2
 C cysteine            2.0         18           2
 D aspartate           3.3         30           2
 E glutamate           6.4         58           4
 F phenylalanine       3.3         30           1
 G glycine             5.4         49           2
 H histidine           2.3         21           2
 I isoleucine          4.0         36           2
 K lysine              7.3         66           3
 L leucine            11.2        101           2
 M methionine          2.7         24           1
 N asparagine          3.5         32           2
 P proline             6.4         58           5
 Q glutamine           4.5         41           3
 R arginine            5.4         49           2
 S serine             10.1         91           4
 T threonine           6.4         58           2
 V valine              5.5         50           2
 W tryptophan          0.9          8           1
 Y tyrosine            3.4         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84077 
C3orf44               0.024   hypothetical protein LOC131831 
RNF44                 0.010   ring finger protein 44 
MLL4                  0.008   myeloid/lymphoid or mixed-lineage leukemia 4 
ZNF628                0.007   zinc finger protein 628 
FGD1                  0.007   faciogenital dysplasia protein 
NRXN2                 0.007   neurexin 2 isoform beta precursor 
ERBB2                 0.006   erbB-2 isoform b 
ERBB2                 0.006   erbB-2 isoform a 
FLJ32682              0.006   hypothetical protein LOC220081 
PRR12                 0.006   proline rich 12 
LOC100128304          0.006   PREDICTED: hypothetical protein 
LOC100128304          0.006   PREDICTED: hypothetical protein 
LOC100128304          0.006   PREDICTED: hypothetical protein 
PRIMA1                0.005   proline rich membrane anchor 1 precursor 
FMNL2                 0.005   formin-like 2 
ABI1                  0.005   abl-interactor 1 isoform a 
MUC12                 0.005   PREDICTED: mucin 12 
PCDH15                0.005   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-6 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-1 precursor 
RNF38                 0.005   ring finger protein 38 isoform 2 
RNF38                 0.005   ring finger protein 38 isoform 2 
RNF38                 0.005   ring finger protein 38 isoform 3 
RNF38                 0.005   ring finger protein 38 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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