Guide to the Human Genome
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Name: LOC100289819 Sequence: fasta or formatted (354aa) NCBI GI: 239750869
Description:

PREDICTED: hypothetical protein XP_002347589

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.1         50           2
 C cysteine            1.4          5           1
 D aspartate           3.1         11           1
 E glutamate           4.5         16           1
 F phenylalanine       1.1          4           1
 G glycine             7.9         28           2
 H histidine           5.9         21           1
 I isoleucine          3.1         11           1
 K lysine              1.7          6           1
 L leucine            16.1         57           3
 M methionine          0.6          2           1
 N asparagine          1.1          4           1
 P proline             4.0         14           2
 Q glutamine           6.8         24           2
 R arginine            7.9         28           2
 S serine              5.6         20           2
 T threonine           4.0         14           1
 V valine              9.6         34           2
 W tryptophan          0.6          2           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347589 
LOC100292799          0.665   PREDICTED: hypothetical protein 
LOC100287646          0.665   PREDICTED: hypothetical protein XP_002343394 
HERC1                 0.017   guanine nucleotide exchange factor p532 
LOC100291804          0.015   PREDICTED: hypothetical protein XP_002345334 
LOC100287022          0.015   PREDICTED: hypothetical protein 
LOC100288204          0.015   PREDICTED: hypothetical protein XP_002342212 
LOC100133479          0.012   PREDICTED: hypothetical protein 
LOC100133479          0.012   PREDICTED: hypothetical protein 
TNIP2                 0.011   A20-binding inhibitor of NF-kappaB activation 2 iso...
LOC100291782          0.011   PREDICTED: hypothetical protein XP_002346152 
LOC100289951          0.011   PREDICTED: hypothetical protein XP_002347042 
LOC100287492          0.011   PREDICTED: hypothetical protein XP_002342893 
AARS2                 0.009   alanyl-tRNA synthetase 2, mitochondrial 
STK11IP               0.008   LKB1 interacting protein 
ABCC5                 0.008   ATP-binding cassette, sub-family C, member 5 isoform...
WNK3                  0.006   WNK lysine deficient protein kinase 3 isoform 1 [Hom...
WNK3                  0.006   WNK lysine deficient protein kinase 3 isoform 2 [Hom...
LOC100293575          0.006   PREDICTED: hypothetical protein 
LOC100290681          0.006   PREDICTED: hypothetical protein XP_002346859 
LOC100287330          0.006   PREDICTED: hypothetical protein XP_002342702 
NLRP5                 0.006   NACHT, LRR and PYD containing protein 5 
LOC100290946          0.005   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.005   PREDICTED: hypothetical protein XP_002344246 
AMDHD2                0.005   amidohydrolase domain containing 2 isoform 2 
AMDHD2                0.005   amidohydrolase domain containing 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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