Guide to the Human Genome
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Name: LOC100289965 Sequence: fasta or formatted (295aa) NCBI GI: 239749673
Description:

PREDICTED: hypothetical protein XP_002347141

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         33           4
 C cysteine            3.1          9           2
 D aspartate           3.7         11           2
 E glutamate           1.7          5           1
 F phenylalanine       3.1          9           2
 G glycine             6.8         20           2
 H histidine           2.4          7           2
 I isoleucine          2.7          8           1
 K lysine              1.0          3           1
 L leucine            12.2         36           3
 M methionine          3.1          9           2
 N asparagine          1.0          3           1
 P proline             9.2         27           4
 Q glutamine           2.7          8           1
 R arginine            7.8         23           2
 S serine             11.9         35           5
 T threonine           7.5         22           1
 V valine              6.8         20           2
 W tryptophan          1.7          5           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347141 
LOC100289007          1.000   PREDICTED: hypothetical protein XP_002342994 
LOC100292488          0.722   PREDICTED: hypothetical protein 
PCLO                  0.028   piccolo isoform 2 
PCLO                  0.028   piccolo isoform 1 
WASF3                 0.026   WAS protein family, member 3 
FMN1                  0.026   formin 1 
LIX1L                 0.026   Lix1 homolog (mouse) like 
HCN2                  0.026   hyperpolarization activated cyclic nucleotide-gated...
WASL                  0.026   Wiskott-Aldrich syndrome gene-like protein 
KDM6B                 0.026   lysine (K)-specific demethylase 6B 
WASF2                 0.026   WAS protein family, member 2 
RXRB                  0.025   retinoid X receptor, beta 
MED19                 0.025   mediator complex subunit 19 
INF2                  0.025   inverted formin 2 isoform 2 
INF2                  0.025   inverted formin 2 isoform 1 
HOXB4                 0.025   homeobox B4 
USP51                 0.025   ubiquitin specific protease 51 
VASP                  0.023   vasodilator-stimulated phosphoprotein 
CPSF6                 0.023   cleavage and polyadenylation specific factor 6, 68 ...
RANBP9                0.023   RAN binding protein 9 
TRRAP                 0.021   transformation/transcription domain-associated protei...
SYN2                  0.021   synapsin II isoform IIa 
BAT3                  0.021   HLA-B associated transcript-3 isoform b 
BAT3                  0.021   HLA-B associated transcript-3 isoform b 
BAT3                  0.021   HLA-B associated transcript-3 isoform b 
BAT3                  0.021   HLA-B associated transcript-3 isoform a 
SYN2                  0.021   synapsin II isoform IIb 
RAPH1                 0.021   Ras association and pleckstrin homology domains 1 is...
ARX                   0.021   aristaless related homeobox 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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