Guide to the Human Genome
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Name: TRIM73 Sequence: fasta or formatted (250aa) NCBI GI: 65285121
Description:

tripartite motif-containing 73

Referenced in:

Tripartite Motif Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         12           2
 C cysteine            5.6         14           1
 D aspartate           4.0         10           1
 E glutamate          10.0         25           2
 F phenylalanine       3.2          8           1
 G glycine             5.2         13           2
 H histidine           4.8         12           2
 I isoleucine          3.2          8           1
 K lysine              5.2         13           2
 L leucine            12.8         32           2
 M methionine          2.4          6           1
 N asparagine          2.0          5           1
 P proline             4.0         10           1
 Q glutamine           5.6         14           1
 R arginine            6.0         15           2
 S serine              7.6         19           3
 T threonine           2.4          6           1
 V valine              8.4         21           2
 W tryptophan          2.0          5           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif-containing 73 
TRIM74                0.994   tripartite motif-containing 74 
TRIM50                0.903   tripartite motif protein 50A 
TRIM72                0.170   tripartite motif-containing 72 
TRIM34                0.162   tripartite motif protein 34 isoform 3 
TRIM34                0.162   tripartite motif protein 34 isoform 1 
TRIM34                0.162   tripartite motif protein 34 isoform 1 
TRIM6-TRIM34          0.162   tripartite motif-containing 6 and tripartite motif-c...
TRIM39                0.156   tripartite motif-containing 39 isoform 2 
TRIM39                0.156   tripartite motif-containing 39 isoform 1 
TRIM22                0.154   tripartite motif-containing 22 
TRIM27                0.154   ret finger protein 
TRIM5                 0.154   tripartite motif protein TRIM5 isoform alpha 
TRIM6                 0.147   tripartite motif-containing 6 isoform 2 
TRIM6                 0.147   tripartite motif-containing 6 isoform 1 
TRIM5                 0.147   tripartite motif protein TRIM5 isoform delta 
TRIM5                 0.147   tripartite motif protein TRIM5 isoform gamma 
TRIM4                 0.143   tripartite motif protein TRIM4 isoform beta 
TRIM60                0.139   ring finger protein 129 
TRIM61                0.133   tripartite motif-containing 61 
TRIM59                0.133   tripartite motif-containing 59 
TRIM35                0.133   tripartite motif-containing 35 isoform 2 
TRIM17                0.129   tripartite motif-containing 17 isoform 3 
TRIM17                0.129   tripartite motif-containing 17 isoform 1 
TRIM17                0.129   tripartite motif-containing 17 isoform 1 
TRIM11                0.129   tripartite motif-containing 11 
TRIM7                 0.129   tripartite motif-containing 7 isoform 1 
TRIM10                0.127   tripartite motif-containing 10 isoform 1 
TRIM10                0.127   tripartite motif-containing 10 isoform 2 
TRIM13                0.127   ret finger protein 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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