Guide to the Human Genome
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Name: TRIM61 Sequence: fasta or formatted (209aa) NCBI GI: 60099474
Description:

tripartite motif-containing 61

Referenced in:

Tripartite Motif Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         10           2
 C cysteine            7.7         16           2
 D aspartate           3.8          8           1
 E glutamate           7.2         15           2
 F phenylalanine       4.3          9           2
 G glycine             1.9          4           1
 H histidine           4.8         10           2
 I isoleucine          5.3         11           2
 K lysine             10.0         21           3
 L leucine            10.0         21           2
 M methionine          1.9          4           1
 N asparagine          2.4          5           1
 P proline             5.3         11           1
 Q glutamine           3.8          8           1
 R arginine            5.3         11           1
 S serine             10.5         22           2
 T threonine           4.3          9           1
 V valine              3.8          8           1
 W tryptophan          1.4          3           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif-containing 61 
TRIM60                0.536   ring finger protein 129 
TRIM75                0.400   tripartite motif-containing 75 
TRIM39                0.294   tripartite motif-containing 39 isoform 2 
TRIM39                0.294   tripartite motif-containing 39 isoform 1 
TRIM17                0.208   tripartite motif-containing 17 isoform 3 
TRIM17                0.208   tripartite motif-containing 17 isoform 1 
TRIM17                0.208   tripartite motif-containing 17 isoform 1 
TRIM43                0.199   tripartite motif-containing 43 
LOC653192             0.196   PREDICTED: Tripartite motif-containing protein 43-li...
TRIM11                0.187   tripartite motif-containing 11 
TRIM4                 0.182   tripartite motif protein TRIM4 isoform beta 
TRIM27                0.179   ret finger protein 
TRIM4                 0.179   tripartite motif protein TRIM4 isoform alpha 
TRIM31                0.179   tripartite motif protein 31 
TRIM53                0.177   tripartite motif-containing 53 
LOC642425             0.177   tripartite motif-containing 53-like 
LOC642425             0.177   PREDICTED: tripartite motif-containing 53-like [Hom...
LOC340970             0.175   PREDICTED: similar to tripartite motif-containing 5...
LOC340970             0.175   PREDICTED: similar to tripartite motif-containing 5...
LOC340970             0.172   PREDICTED: similar to tripartite motif-containing 5...
TRIM26                0.172   tripartite motif-containing 26 
SPRYD5                0.172   SPRY domain containing 5 
TRIM68                0.172   ring finger protein 137 
LOC729384             0.170   hypothetical protein LOC729384 
LOC100134006          0.170   PREDICTED: similar to ring finger protein 18 isofor...
LOC399939             0.170   PREDICTED: similar to ring finger protein 18 
LOC100131392          0.170   PREDICTED: similar to ring finger protein 18 
LOC120824             0.170   PREDICTED: similar to hCG1802386 
LOC120824             0.170   PREDICTED: similar to hCG1802386 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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