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Search of human proteins with 62241042
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens]
(1512 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens] 3070 0.0
gi|4826960 glutaminyl-tRNA synthetase [Homo sapiens] 252 2e-66
gi|134288884 glutamyl-tRNA synthetase 2 [Homo sapiens] 65 6e-10
gi|47419916 tryptophanyl-tRNA synthetase isoform a [Homo sapiens] 62 3e-09
gi|47419914 tryptophanyl-tRNA synthetase isoform a [Homo sapiens] 62 3e-09
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 48 8e-05
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 47 1e-04
gi|14043022 methionyl-tRNA synthetase [Homo sapiens] 47 1e-04
gi|4758862 eukaryotic translation elongation factor 1 epsilon 1 ... 47 2e-04
gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 46 2e-04
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 45 4e-04
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 44 0.001
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 44 0.001
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 43 0.002
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 43 0.003
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 43 0.003
gi|208879470 eukaryotic translation elongation factor 1 epsilon ... 42 0.003
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 42 0.003
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 42 0.003
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 41 0.010
gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo ... 41 0.010
gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo ... 41 0.010
gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo... 40 0.017
gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo... 40 0.017
gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens] 40 0.017
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 40 0.022
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 40 0.022
gi|104526627 triadin [Homo sapiens] 39 0.050
gi|91208428 protein tyrosine phosphatase, receptor-type, zeta1 p... 38 0.065
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 38 0.065
>gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens]
Length = 1512
Score = 3070 bits (7958), Expect = 0.0
Identities = 1512/1512 (100%), Positives = 1512/1512 (100%)
Query: 1 MATLSLTVNSGDPPLGALLAVEHVKDDVSISVEEGKENILHVSENVIFTDVNSILRYLAR 60
MATLSLTVNSGDPPLGALLAVEHVKDDVSISVEEGKENILHVSENVIFTDVNSILRYLAR
Sbjct: 1 MATLSLTVNSGDPPLGALLAVEHVKDDVSISVEEGKENILHVSENVIFTDVNSILRYLAR 60
Query: 61 VATTAGLYGSNLMEHTEIDHWLEFSATKLSSCDSFTSTINELNHCLSLRTYLVGNSLSLA 120
VATTAGLYGSNLMEHTEIDHWLEFSATKLSSCDSFTSTINELNHCLSLRTYLVGNSLSLA
Sbjct: 61 VATTAGLYGSNLMEHTEIDHWLEFSATKLSSCDSFTSTINELNHCLSLRTYLVGNSLSLA 120
Query: 121 DLCVWATLKGNAAWQEQLKQKKAPVHVKRWFGFLEAQQAFQSVGTKWDVSTTKARVAPEK 180
DLCVWATLKGNAAWQEQLKQKKAPVHVKRWFGFLEAQQAFQSVGTKWDVSTTKARVAPEK
Sbjct: 121 DLCVWATLKGNAAWQEQLKQKKAPVHVKRWFGFLEAQQAFQSVGTKWDVSTTKARVAPEK 180
Query: 181 KQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTN 240
KQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTN
Sbjct: 181 KQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTN 240
Query: 241 PEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMK 300
PEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMK
Sbjct: 241 PEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMK 300
Query: 301 AEREQRIDSKHRKNPIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCK 360
AEREQRIDSKHRKNPIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCK
Sbjct: 301 AEREQRIDSKHRKNPIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCK 360
Query: 361 IQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYI 420
IQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYI
Sbjct: 361 IQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYI 420
Query: 421 WEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGS 480
WEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGS
Sbjct: 421 WEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGS 480
Query: 481 SRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKKEVIPVNVPEAQEEMKEVAKHPKNPEVG 540
SRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKKEVIPVNVPEAQEEMKEVAKHPKNPEVG
Sbjct: 481 SRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKKEVIPVNVPEAQEEMKEVAKHPKNPEVG 540
Query: 541 LKPVWYSPKVFIEGADAETFSEGEMVTFINWGNLNITKIHKNADGKIISLDAKLNLENKD 600
LKPVWYSPKVFIEGADAETFSEGEMVTFINWGNLNITKIHKNADGKIISLDAKLNLENKD
Sbjct: 541 LKPVWYSPKVFIEGADAETFSEGEMVTFINWGNLNITKIHKNADGKIISLDAKLNLENKD 600
Query: 601 YKKTTKVTWLAETTHALPIPVICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPC 660
YKKTTKVTWLAETTHALPIPVICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPC
Sbjct: 601 YKKTTKVTWLAETTHALPIPVICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPC 660
Query: 661 LKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCKEAPCVLIYIPDGHTKEMPTSGSKEKTK 720
LKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCKEAPCVLIYIPDGHTKEMPTSGSKEKTK
Sbjct: 661 LKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCKEAPCVLIYIPDGHTKEMPTSGSKEKTK 720
Query: 721 VEATKNETSAPFKERPTPSLNNNCTTSEDSLVLYNRVAVQGDVVRELKAKKAPKEDVDAA 780
VEATKNETSAPFKERPTPSLNNNCTTSEDSLVLYNRVAVQGDVVRELKAKKAPKEDVDAA
Sbjct: 721 VEATKNETSAPFKERPTPSLNNNCTTSEDSLVLYNRVAVQGDVVRELKAKKAPKEDVDAA 780
Query: 781 VKQLLSLKAEYKEKTGQEYKPGNPPAEIGQNISSNSSASILESKSLYDEVAAQGEVVRKL 840
VKQLLSLKAEYKEKTGQEYKPGNPPAEIGQNISSNSSASILESKSLYDEVAAQGEVVRKL
Sbjct: 781 VKQLLSLKAEYKEKTGQEYKPGNPPAEIGQNISSNSSASILESKSLYDEVAAQGEVVRKL 840
Query: 841 KAEKSPKAKINEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSSDSSPTRNSEPAGLETPE 900
KAEKSPKAKINEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSSDSSPTRNSEPAGLETPE
Sbjct: 841 KAEKSPKAKINEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSSDSSPTRNSEPAGLETPE 900
Query: 901 AKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAED 960
AKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAED
Sbjct: 901 AKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAED 960
Query: 961 KDKKKKEKENKSEKQNKPQKQNDGQRKDPSKNQGGGLSSSGAGEGQGPKKQTRLGLEAKK 1020
KDKKKKEKENKSEKQNKPQKQNDGQRKDPSKNQGGGLSSSGAGEGQGPKKQTRLGLEAKK
Sbjct: 961 KDKKKKEKENKSEKQNKPQKQNDGQRKDPSKNQGGGLSSSGAGEGQGPKKQTRLGLEAKK 1020
Query: 1021 EENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPM 1080
EENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPM
Sbjct: 1021 EENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPM 1080
Query: 1081 FVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDL 1140
FVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDL
Sbjct: 1081 FVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDL 1140
Query: 1141 PIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEEL 1200
PIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEEL
Sbjct: 1141 PIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEEL 1200
Query: 1201 LAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPK 1260
LAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPK
Sbjct: 1201 LAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPK 1260
Query: 1261 IPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDK 1320
IPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDK
Sbjct: 1261 IPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDK 1320
Query: 1321 EALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFV 1380
EALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFV
Sbjct: 1321 EALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFV 1380
Query: 1381 AVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSG 1440
AVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSG
Sbjct: 1381 AVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSG 1440
Query: 1441 KIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKN 1500
KIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKN
Sbjct: 1441 KIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKN 1500
Query: 1501 PAKYYTLFGRSY 1512
PAKYYTLFGRSY
Sbjct: 1501 PAKYYTLFGRSY 1512
>gi|4826960 glutaminyl-tRNA synthetase [Homo sapiens]
Length = 775
Score = 252 bits (644), Expect = 2e-66
Identities = 175/526 (33%), Positives = 254/526 (48%), Gaps = 38/526 (7%)
Query: 176 VAPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMR 235
V P + + +E+ G G+V RFPPE +G LHIGHAKA N Y G +R
Sbjct: 245 VTPHTMNLLKQHLEITG---GQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLR 301
Query: 236 FDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTP 295
FDDTNPEKE+ F I + VA L P + TY SD+F+ + +A +LI+ G AYV
Sbjct: 302 FDDTNPEKEEAKFFTAICDMVAWLGYTPYKVTYASDYFDQLYAWAVELIRRGLAYVCHQR 361
Query: 296 AEQMKAEREQRIDSKHRKNPIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPT 355
E++K + S R P+E++L ++E M+KG LR K+ M DP
Sbjct: 362 GEELKGHNT--LPSPWRDRPMEESLLLFEAMRKGKFSEGEATLRMKLVMEDGK---MDPV 416
Query: 356 LYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGI 415
YR K PH RTG+K+ +YPTYD+ + DSIE +TH+L T E+ R ++W+ AL +
Sbjct: 417 AYRVKYTPHHRTGDKWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDV 476
Query: 416 RKPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFI 475
P WEY RLNL+ V+SKRK+ V G V WDDPR T+ + RRG E + F
Sbjct: 477 YCPVQWEYGRLNLHYAVVSKRKILQLVATGAVRDWDDPRLFTLTALRRRGFPPEAINNFC 536
Query: 476 AAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKK-EVIPVNVPEAQEEMKEVAKHP 534
A G + + ME + A + V++ APR +A+L+ VI N P A+ +V P
Sbjct: 537 ARVGVTVAQTTMEPHLLEACVRDVLNDTAPRAMAVLESLRVIITNFPAAKSLDIQVPNFP 596
Query: 535 KNPEVGLKPVWYSPKVFIEGADAETFSEGEMVTF--INWGN----------LNITKIHKN 582
+ G V ++P VFIE D F E F + WG + + + K
Sbjct: 597 ADETKGFHQVPFAPIVFIERTD---FKEEPEPGFKRLAWGQPVGLRHTGYVIELQHVVKG 653
Query: 583 ADGKIISLDAKLNLENKDYKKTTKVTWLAETTHALPIPVICVT------YEHLITKPVLG 636
G + SL+ + K + W+++ P++C ++H +
Sbjct: 654 PSGCVESLEVTCRRADAGEKPKAFIHWVSQ-------PLMCEVRLYERLFQHKNPEDPTE 706
Query: 637 KDEDFKQYVNKNSKH-EELMLGDPCLKDLKKGDIIQLQRRGFFICD 681
F +N S H + L D + K D Q +R G+F D
Sbjct: 707 VPGGFLSDLNLASLHVVDAALVDCSVALAKPFDKFQFERLGYFSVD 752
>gi|134288884 glutamyl-tRNA synthetase 2 [Homo sapiens]
Length = 523
Score = 64.7 bits (156), Expect = 6e-10
Identities = 71/298 (23%), Positives = 127/298 (42%), Gaps = 26/298 (8%)
Query: 173 KARVAPEKKQDVGKFVELPGAEMG-KVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGK 231
+ R + + VG+ G + G V VRF P +G+LH+G + AL N + ++G
Sbjct: 11 RERPSAASGRPVGRREANLGTDAGVAVRVRFAPSPTGFLHLGGLRTALYNYIFAKKYQGS 70
Query: 232 LIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFT---------YTSDHFETIMKYAEK 282
I+R +DT+ + + I + + I PD+ S E + E
Sbjct: 71 FILRLEDTDQTRVVPGAAENIEDMLEWAGIPPDESPRRGGPAGPYQQSQRLELYAQATEA 130
Query: 283 LIQEGKAY--------VDDTPAEQMKAEREQRIDSKHRKNPIEKNLQ-MWEEMKKGSQFG 333
L++ G AY ++ E ++ + R D++ R E+ Q + ++ K +F
Sbjct: 131 LLKTGAAYPCFCSPQRLELLKKEALRNHQTPRYDNRCRNMSQEQVAQKLAKDPKPAIRFR 190
Query: 334 QSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHA 393
+ A D+ G R ++ P K + +PTY AC + D G++H
Sbjct: 191 LEQVVPAFQDLV--YGWNRHEV---ASVEGDP-VIMKSDGFPTYHLACVVDDHHMGISHV 244
Query: 394 LRTTEYHDRDEQFYWIIEALGIRKPYIWEYS-RLNLNNTVLSKRKLTWFVNEGLVDGW 450
LR +E+ + + +ALG + P+ LN + + LSKR+ F+ DG+
Sbjct: 245 LRGSEWLVSTAKHLLLYQALGWQPPHFAHLPLLLNRDGSKLSKRQGDVFLEHFAADGF 302
>gi|47419916 tryptophanyl-tRNA synthetase isoform a [Homo sapiens]
Length = 471
Score = 62.4 bits (150), Expect = 3e-09
Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 4/58 (6%)
Query: 751 LVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYK----PGNP 804
L L+N +A QG++VR LKA A K+++D+AVK L+SLK YK G++YK PGNP
Sbjct: 10 LELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKADCPPGNP 67
Score = 57.4 bits (137), Expect = 1e-07
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 814 SNSSASILESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEKTGKEYI 873
++ AS+LE L++ +A QGE+VR LKA + K +I+ AV+ L+SLK YK G++Y
Sbjct: 3 NSEPASLLE---LFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYK 59
Query: 874 PGQPPLSQSSDSSPTRNSEPAGLETPE 900
PP + +PT N P E E
Sbjct: 60 ADCPP----GNPAPTSNHGPDATEAEE 82
Score = 56.2 bits (134), Expect = 2e-07
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Query: 890 NSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVE 949
NSEPA L LF+ +A+QGE+VR LK A KD++D AV+ L+ LK YK+ G +
Sbjct: 3 NSEPASLLE-----LFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGED 57
Query: 950 YK 951
YK
Sbjct: 58 YK 59
>gi|47419914 tryptophanyl-tRNA synthetase isoform a [Homo sapiens]
Length = 471
Score = 62.4 bits (150), Expect = 3e-09
Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 4/58 (6%)
Query: 751 LVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYK----PGNP 804
L L+N +A QG++VR LKA A K+++D+AVK L+SLK YK G++YK PGNP
Sbjct: 10 LELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKADCPPGNP 67
Score = 57.4 bits (137), Expect = 1e-07
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 814 SNSSASILESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEKTGKEYI 873
++ AS+LE L++ +A QGE+VR LKA + K +I+ AV+ L+SLK YK G++Y
Sbjct: 3 NSEPASLLE---LFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYK 59
Query: 874 PGQPPLSQSSDSSPTRNSEPAGLETPE 900
PP + +PT N P E E
Sbjct: 60 ADCPP----GNPAPTSNHGPDATEAEE 82
Score = 56.2 bits (134), Expect = 2e-07
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Query: 890 NSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVE 949
NSEPA L LF+ +A+QGE+VR LK A KD++D AV+ L+ LK YK+ G +
Sbjct: 3 NSEPASLLE-----LFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGED 57
Query: 950 YK 951
YK
Sbjct: 58 YK 59
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-05
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 18/225 (8%)
Query: 787 LKAEYKEKTGQEYKPGNPPAEIGQNISSNSSASILESKSLYDEVAAQGEVVRKLKAEKSP 846
L++ +K Q+ KPG P E G N ++S I K++ + A + E RK + E+
Sbjct: 194 LQSRKGQKKNQKNKPG-PNIESG-NEDDDASFKI---KTVAQKKAEKKERERKKRDEEKA 248
Query: 847 KA-KINEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSSDSSPTRNSEPAGLETPEA---- 901
K K+ E E K Q K+K + + S+ + + + ETP A
Sbjct: 249 KLRKLKEKEELETGKKDQSKQKESQRKFEEETVKSKVTVDTGVIPASEEKAETPTAAEDD 308
Query: 902 ----KVLFDKVASQGEVVRKLKTEKAPKDQVDI-AVQELL-QLKAQYKSLIGVEYKPVSA 955
K DK +GE K K +K + + A+QE L +LK + + E + +
Sbjct: 309 NEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKR 368
Query: 956 TGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDPSKNQGGGLSSS 1000
E+ + K+KE+E +++ + +KQ + +RK+ K +G L+ S
Sbjct: 369 L--EELEAKRKEEERLEQEKRERKKQKEKERKERLKKEGKLLTKS 411
Score = 38.5 bits (88), Expect = 0.050
Identities = 54/240 (22%), Positives = 95/240 (39%), Gaps = 19/240 (7%)
Query: 768 KAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYKPGNPPAEIGQNISSNSSASILESKSLY 827
K KK +D D+ + K++ K E G+ + + + +S +
Sbjct: 102 KGKKQSFDDNDSEELEDKDSKSKKTAKPKVEMYSGSDDDDDFNKLPKKAKGKAQKSNKKW 161
Query: 828 DEVAAQGEVVRKLKAEK---SPKAKINEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSSD 884
D + +K+K S +E+ E L S K Q K + K PG S + D
Sbjct: 162 DGSEEDEDNSKKIKERSRINSSGESGDESDEFLQSRKGQKKNQKNK---PGPNIESGNED 218
Query: 885 SSPTRNSEPAGLETPEAKVLFDKVASQGEV-VRKLKT----EKAPKDQVDIAVQELLQLK 939
+ + + E K K + + +RKLK E KDQ + +
Sbjct: 219 DDASFKIKTVAQKKAEKKERERKKRDEEKAKLRKLKEKEELETGKKDQSKQKESQRKFEE 278
Query: 940 AQYKSLIGV--------EYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDPSK 991
KS + V E K + T AED ++ K+K++K +K+ + +++ ++K PSK
Sbjct: 279 ETVKSKVTVDTGVIPASEEKAETPTAAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPSK 338
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 47.4 bits (111), Expect = 1e-04
Identities = 52/241 (21%), Positives = 100/241 (41%), Gaps = 30/241 (12%)
Query: 793 EKTGQEYKPGNPPAEIGQNISSNSSASILESKSLYDEVAAQGEVVRKLKAEKSPKAKINE 852
E+T + + PG ++ + SN+SAS ++ D + + ++K K K K++
Sbjct: 476 EETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSR--- 532
Query: 853 AVECLLSLKAQYKEKTGKEYIPGQPPLSQ----SSDSSPTRNSEPAGLETPEAKVLFDKV 908
K + K GK+ + P+S + S S+ G+ + D
Sbjct: 533 --------KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGIS------ITDLS 578
Query: 909 ASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAEDKDKKKKEK 968
GE+ + + EK K++ D ++ + Y+ + + DK KKKK+
Sbjct: 579 KKAGEIWKGMSKEK--KEEWDRKAED---ARRDYEKAMKEYEGGRGESSKRDKSKKKKKV 633
Query: 969 ENKSEKQNKPQK----QNDGQRKDPSKNQGGGLSSSGAGEGQGPKKQTRLGLEAKKEENL 1024
+ K EK++ P + ++ ++ S +SS + G+ K+ R E +EE L
Sbjct: 634 KVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEEEEL 693
Query: 1025 A 1025
A
Sbjct: 694 A 694
>gi|14043022 methionyl-tRNA synthetase [Homo sapiens]
Length = 900
Score = 47.0 bits (110), Expect = 1e-04
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 699 LIYIPDGHT--KEMPTSGSKEKTKVEATKNETSA-PFKERPTPSLNNNCTTSEDSLV--L 753
L +P GH P E ++E+ + K P P++ TT++ + L
Sbjct: 786 LCTLPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQQIQAL 845
Query: 754 YNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYKPGNPP 805
+ V QG++VRELKA+KA K +V A V +LL LK K+ E KP P
Sbjct: 846 MDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLK---KQLAVAEGKPPEAP 894
Score = 45.4 bits (106), Expect = 4e-04
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 892 EPAGLET------PEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSL 945
+PA +ET + + L D+V QG +VR+LK +KA K++V V +LL LK K L
Sbjct: 827 KPAVVETVTTAKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLK---KQL 883
Query: 946 IGVEYKPVSATGAEDKDKKKK 966
E KP A K KKKK
Sbjct: 884 AVAEGKPPEA----PKGKKKK 900
Score = 40.8 bits (94), Expect = 0.010
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 812 ISSNSSASILESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEKTGK 870
+ + ++A + ++L DEV QG +VR+LKA+K+ K ++ V LL LK Q GK
Sbjct: 831 VETVTTAKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGK 889
>gi|4758862 eukaryotic translation elongation factor 1 epsilon 1
isoform 1 [Homo sapiens]
Length = 174
Score = 46.6 bits (109), Expect = 2e-04
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 39 ILHVSENVIFTDVNSILRYLARVATTAGLYGSNLMEHTEIDHWLEFSATKL---SSCDSF 95
+L + T + +I +L + A L GS E + WLE+ T++ SS +
Sbjct: 32 VLQTNNGPSLTGLTTIAAHLVKQANKEYLLGSTAEEKAIVQQWLEYRVTQVDGHSSKNDI 91
Query: 96 TSTINELNHCLSLRTYLVGNSLSLADLCVWATLKGNAAWQEQLKQKKAPVHVKRWF 151
+ + +LN L + YL G + +LAD+ ++ L +++K+ ++V RWF
Sbjct: 92 HTLLKDLNSYLEDKVYLTGYNFTLADILLYYGLH-RFIVDLTVQEKEKYLNVSRWF 146
>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
Length = 1441
Score = 46.2 bits (108), Expect = 2e-04
Identities = 102/522 (19%), Positives = 191/522 (36%), Gaps = 71/522 (13%)
Query: 508 VALLKKEVIPVNVPEAQEEMKEVAKHPKNPEVGLKPVWYSPKVFIEGADAETFSEGEMVT 567
+ALLK ++ PV + + ++ + P + K +PK + + SE + +
Sbjct: 202 LALLKAQIDPVLLKNSSQQDNSSRESPSLEDEETKKEEETPKQEEQKESEKMKSEEQPMD 261
Query: 568 FINWGNLNI-----TKIHKNADGKIISLDAKLNLEN----KDYKKTTKVTWLAETTHALP 618
N N+ K K + +++ L + LE + KK K + + P
Sbjct: 262 LENRSTANVLEETTVKKEKEDEKELVKLPVIVKLEKPLPENEEKKIIKEESDSFKENVKP 321
Query: 619 IPVICVTY-------EHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDI-- 669
I V + + KPV + E + N S HE + LK
Sbjct: 322 IKVEVKECRADPKDTKSSMEKPVAQEPERIEFGGNIKSSHEITEKSTEETEKLKNDQQAK 381
Query: 670 IQLQRRGFFICDQPYEPVSPYSCKEAPCVLIYIPDGHTKEMPTSG-----------SKEK 718
I L++R + D PV CK ++ D +E T K+
Sbjct: 382 IPLKKREIKLSDDFDSPVKGPLCKSVTPTKEFLKDEIKQEEETCKRISTITALGHEGKQL 441
Query: 719 TKVEATKNETSAPFKERP-------------TPSLNNNCTTSEDSLVLYNRVAVQGDVVR 765
E + + FK P +PS + N T + N V +
Sbjct: 442 VNGEVSDERVAPNFKTEPIETKFYETKEESYSPSKDRNIITEGNGTESLNSV-ITSMKTG 500
Query: 766 ELKAKKAP-KEDVDAAVK--QLLSLKAEYKEKTGQEYKPGNPPAEIGQNISSNSSASILE 822
EL+ + AP ++D D+++ ++ S KA+ +E E + +E+ +++SS ++ S E
Sbjct: 501 ELEKETAPLRKDADSSISVLEIHSQKAQIEEPDPPEMETSLDSSEMAKDLSSKTALSSTE 560
Query: 823 SKSLYDEVAAQGEVVRKL--------KAEKSPKAKINEAVECLLSLKAQYKEKTGKEYIP 874
S ++ E + K K EKS K +++ + L + + + T + P
Sbjct: 561 SCTMKGEEKSPKTKKDKRPPILECLEKLEKSKKTFLDKDAQRLSPIPEEVPKSTLESEKP 620
Query: 875 GQPPLSQSSDSSPTRNSEPAGLETPEAKVL--FDKVASQGEVVRKLKTEKAPKDQVDIAV 932
G P +++S P + ++ +K+AS+ EVV T V
Sbjct: 621 GSPEAAETS---------------PPSNIIDHCEKLASEKEVVECQSTSTVGGQSVKKVD 665
Query: 933 QELLQLKAQYKSLIGVEYKPVSATGAEDKDKKKKEKENKSEK 974
E L+ +++ + +G E+ + K + K
Sbjct: 666 LETLKEDSEFTKVEMDNLDNAQTSGIEEPSETKGSMQKSKFK 707
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 45.4 bits (106), Expect = 4e-04
Identities = 74/310 (23%), Positives = 114/310 (36%), Gaps = 43/310 (13%)
Query: 708 KEMPTSGSKEKTKVEATKNETSAPFKERPTPSLNNNCTTSEDSLVLYNRVAVQGDVVREL 767
KE S K K+ +A + +P E TP+ + D + V+ +V
Sbjct: 741 KEEAKSPEKAKSPEKAKTLDVKSP--EAKTPA-KEEARSPADKFPEKAKSPVKEEVKSPE 797
Query: 768 KAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYKPGN----PPAEIGQNISSNSSASILES 823
KAK KED A K++ K E K +E KP P + + + ++ E
Sbjct: 798 KAKSPLKEDAKAPEKEIPK-KEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEK 856
Query: 824 KSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSS 883
K E A + E +PK K+ E E + + K + KE ++
Sbjct: 857 KDSKKEEAPKKE---------APKPKVEEKKEPAVEKPKESKVEAKKEE-------AEDK 900
Query: 884 DSSPTRNSE-PAGLETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQY 942
PT E PA +E E + K KTE A K+ D +E + A+
Sbjct: 901 KKVPTPEKEAPAKVEVKE------------DAKPKEKTEVAKKEPDDAKAKEPSK-PAEK 947
Query: 943 KSLIGVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDPSKNQGGGLSSSGA 1002
K E P E+K KK +EK K + K + P + SS+
Sbjct: 948 K-----EAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSSSTDQ 1002
Query: 1003 GEGQGPKKQT 1012
+ + P+K T
Sbjct: 1003 KDSKPPEKAT 1012
Score = 43.1 bits (100), Expect = 0.002
Identities = 89/342 (26%), Positives = 141/342 (41%), Gaps = 43/342 (12%)
Query: 707 TKEMPTSGSKEKT--KVEATKNETS-APFK-ERPTPSLNNNCTTSEDSLVLYNRVAVQGD 762
TKE S K K+ K EA E + +P K E +P + +E + V+ +
Sbjct: 642 TKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEE 701
Query: 763 VVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYK-PGNPPAEIGQNISSNSSASIL 821
KAK KE+ + K +K E KT ++ K P A+ + S A L
Sbjct: 702 AKSPEKAKSPVKEEAKSPEKAKSPVKEE--AKTPEKAKSPVKEEAKSPEKAKSPEKAKTL 759
Query: 822 ESKSLYDEVAAQGEVVRKLKAEKSP---KAKINEAVECLLSLKAQYKE--KTGKEYIPGQ 876
+ KS + A+ E + A+K P K+ + E V+ K+ KE K ++ IP +
Sbjct: 760 DVKSPEAKTPAKEEA--RSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKK 817
Query: 877 PPLSQSSDSSPTRNSEP---AGLETPEAKVLFDKVASQGEVVRKL--KTEKAPKDQVDIA 931
+ SP + E ++ P K +K + + K K E+APK
Sbjct: 818 EEVK-----SPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPK------ 866
Query: 932 VQELLQLKAQYKSLIGVEYKP----VSATGAEDKDKKK-----KEKENKSEKQN--KPQK 980
+E + K + K VE KP V A E +DKKK KE K E + KP++
Sbjct: 867 -KEAPKPKVEEKKEPAVE-KPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKE 924
Query: 981 QNDGQRKDPSKNQGGGLSSSGAGEGQGPKKQTRLGLEAKKEE 1022
+ + +K+P + S + P+K+ +AKK E
Sbjct: 925 KTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPE 966
Score = 37.0 bits (84), Expect = 0.14
Identities = 65/312 (20%), Positives = 121/312 (38%), Gaps = 31/312 (9%)
Query: 715 SKEKTKVEATKNETSAPFKERPTPSLNNNCTTSEDSLVLYNRVAVQGDVVRELKAKKAPK 774
S EK K TK E +P K + S + + + V E K+ + K
Sbjct: 634 SPEKAK-SPTKEEAKSPEKAK-----------SPEKEEAKSPEKAKSPVKAEAKSPEKAK 681
Query: 775 EDVDAAVKQLLSLKAEYKEKTGQEYKPGNPPAEIGQNISSNSSASILESKSLYDEVAAQG 834
V A K K+ KE+ K +P E ++ S E+K+ +
Sbjct: 682 SPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEKAKSPVK 741
Query: 835 EVVRKLKAEKSP-KAKINEAVECLLSLKAQYKEKTGKEYIP--GQPPLSQSSDSSPTRNS 891
E + + KSP KAK + A+ + ++ + P + P+ + SP +
Sbjct: 742 EEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPADKFPEKAKSPVKEEV-KSPEKAK 800
Query: 892 EPAGLETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYK 951
P +AK ++ + EV +K E+ P+ ++ V+E + + K+
Sbjct: 801 SPL---KEDAKAPEKEIPKKEEVKSPVKEEEKPQ---EVKVKEPPKKAEEEKA------- 847
Query: 952 PVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDP--SKNQGGGLSSSGAGEGQGPK 1009
P + E KD KK+E K + K +++ + + P SK + + + P+
Sbjct: 848 PATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPE 907
Query: 1010 KQTRLGLEAKKE 1021
K+ +E K++
Sbjct: 908 KEAPAKVEVKED 919
Score = 35.8 bits (81), Expect = 0.32
Identities = 57/237 (24%), Positives = 93/237 (39%), Gaps = 38/237 (16%)
Query: 790 EYKEKTGQEYKPGNPPAEIGQNISSNSSASILE-SKSLYDEVAAQGEVVRKLKAEKSP-K 847
E +E G E + +PPAE + + + + E +KS + + + E + KSP K
Sbjct: 490 EEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEK 549
Query: 848 AKINEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSSDSSPTRNSEPAGLETPEAKVLFDK 907
AK E +A+ EK + S + SP + PA E
Sbjct: 550 AKSPAKEEAKSPPEAKSPEK--------EEAKSPAEVKSPEKAKSPAKEEA--------- 592
Query: 908 VASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAEDKDKKKKE 967
K E ++ V+E + A+ KS + E K + + +K K +
Sbjct: 593 ---------KSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTK 643
Query: 968 KENKS-EKQNKPQKQNDGQRKDPSKNQGGGLSSSGAGEGQGPKK-QTRLGLEAKKEE 1022
+E KS EK P+K+ + K P K S E + P+K ++ + EAK E
Sbjct: 644 EEAKSPEKAKSPEKE---EAKSPEK-----AKSPVKAEAKSPEKAKSPVKAEAKSPE 692
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 44.3 bits (103), Expect = 0.001
Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 21/276 (7%)
Query: 716 KEKTKVEATKNETSAPFKERPTPSLNNNCTTSEDSLVLYNRVAVQGDVVRELKAKKAPKE 775
KE+ + + E ER T +N ++SL L GDVV E K+ P E
Sbjct: 431 KEQQLLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNE--KKRTPNE 488
Query: 776 DVDAAVKQLLSLKAEYKEKTGQ-EYKPGNPPAEIGQNISSNSSASILESKSLYDEVAAQG 834
+L K E+KEK Q + G+ + + S SS S S S Y +
Sbjct: 489 TTS-----VLEPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSS 543
Query: 835 EVVRKLKAEK---------SPKAKINEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSSDS 885
+ + K SP K + S + + + + I + +++S
Sbjct: 544 RTSSRSSSPKRKKRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIE 603
Query: 886 SPTRNSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSL 945
R + E ++ + R ++ + ++D L ++K
Sbjct: 604 RERRRNRSPSRERRRSR----SRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGE 659
Query: 946 IGVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQ 981
+ + + + DKD+KKK+KE + E+ + +KQ
Sbjct: 660 AKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQ 695
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 44.3 bits (103), Expect = 0.001
Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 21/276 (7%)
Query: 716 KEKTKVEATKNETSAPFKERPTPSLNNNCTTSEDSLVLYNRVAVQGDVVRELKAKKAPKE 775
KE+ + + E ER T +N ++SL L GDVV E K+ P E
Sbjct: 431 KEQQLLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNE--KKRTPNE 488
Query: 776 DVDAAVKQLLSLKAEYKEKTGQ-EYKPGNPPAEIGQNISSNSSASILESKSLYDEVAAQG 834
+L K E+KEK Q + G+ + + S SS S S S Y +
Sbjct: 489 TTS-----VLEPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSS 543
Query: 835 EVVRKLKAEK---------SPKAKINEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSSDS 885
+ + K SP K + S + + + + I + +++S
Sbjct: 544 RTSSRSSSPKRKKRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIE 603
Query: 886 SPTRNSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSL 945
R + E ++ + R ++ + ++D L ++K
Sbjct: 604 RERRRNRSPSRERRRSR----SRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGE 659
Query: 946 IGVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQ 981
+ + + + DKD+KKK+KE + E+ + +KQ
Sbjct: 660 AKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQ 695
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 43.1 bits (100), Expect = 0.002
Identities = 64/278 (23%), Positives = 115/278 (41%), Gaps = 33/278 (11%)
Query: 746 TSEDSLVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLK------AEYKEKTGQEY 799
TS SL++++ ++R L + + ++ +++L L A K+ TGQ
Sbjct: 467 TSVSSLIVWHPANPAEKIIRVLFPGNSTQYNILEGLEKLKHLDFLKQPLATQKDLTGQVP 526
Query: 800 KPGNPPAEIGQNISSNSS----ASILESKSLYDEVAAQGEVVRKLK-AEKSPKAKINEAV 854
P ++ Q S S A L SKS+ E + V K+ EK PK + E V
Sbjct: 527 TPVVKQTKLKQRADSRESLKPAAKPLPSKSVRKESKEETPEVTKVNHVEKPPKVESKEKV 586
Query: 855 ECLLS--LKAQYKEKTGKEYIPGQPPLS---------QSSDSSPTRNSEPAGLETPEAKV 903
+K + K ++ +P + S Q++D P E + + K
Sbjct: 587 MVKKDKPIKTETKPSVTEKEVPSKEEPSPVKAEVAEKQATDVKPKAAKEKTVKKETKVKP 646
Query: 904 ---LFDKVASQGEVVRK------LKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYKPVS 954
+K + EV +K K EK K++V V++ ++K + K E K +
Sbjct: 647 EDKKEEKEKPKKEVAKKEDKTPIKKEEKPKKEEVKKEVKK--EIKKEEKKEPKKEVKKET 704
Query: 955 ATGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDPSKN 992
K+ KK+EK+ +++ +P+K+ KD K+
Sbjct: 705 PPKEVKKEVKKEEKKEVKKEEKEPKKEIKKLPKDAKKS 742
Score = 41.2 bits (95), Expect = 0.008
Identities = 73/366 (19%), Positives = 141/366 (38%), Gaps = 61/366 (16%)
Query: 706 HTKEMPTSGSKEKTKVEATK----------NETSAPFKERPT---------------PSL 740
H ++ P SKEK V+ K E P KE P+ P
Sbjct: 573 HVEKPPKVESKEKVMVKKDKPIKTETKPSVTEKEVPSKEEPSPVKAEVAEKQATDVKPKA 632
Query: 741 NNNCTTSEDSLVL-----------YNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKA 789
T +++ V VA + D K +K KE+V VK+ +K
Sbjct: 633 AKEKTVKKETKVKPEDKKEEKEKPKKEVAKKEDKTPIKKEEKPKKEEVKKEVKK--EIKK 690
Query: 790 EYKEKTGQEYKPGNPPAEIGQNISSNSSASILESKSLYDEVAAQGEVVRKLKAEKSPKAK 849
E K++ +E K PP E+ + + + + +E + E+ + K K
Sbjct: 691 EEKKEPKKEVKKETPPKEVKKEVKKEEKKEVKK-----EEKEPKKEIKKLPKDAKKSSTP 745
Query: 850 INEAVE-CLLSLKAQYKEKT--------GKEYIPGQPPLSQSSDSSPTRNSEPAGLETPE 900
++EA + L K KE++ GK G+ + + + + G
Sbjct: 746 LSEAKKPAALKPKVPKKEESVKKDSVAAGKPKEKGKIKVIKKEGKAAEAVAAAVGTGATT 805
Query: 901 AKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAED 960
A V+ + ++L+ E++ + ++ +LKA+ + + KP ED
Sbjct: 806 AAVMAAAGIAAIGPAKELEAERSLMSSPEDLTKDFEELKAEEVD-VTKDIKP-QLELIED 863
Query: 961 KDKKKKEKENKSEKQNKPQKQNDGQRKDPSKNQGGGLSSSGAGEGQGPKKQTRLGLEAKK 1020
++K K+ + ++ K ++ G + P + G++++ EG+G +QT LE +
Sbjct: 864 EEKLKETEPVEAYVIQKEREVTKGPAESPDE----GITTT---EGEGECEQTPEELEPVE 916
Query: 1021 EENLAD 1026
++ + D
Sbjct: 917 KQGVDD 922
Score = 33.9 bits (76), Expect = 1.2
Identities = 50/237 (21%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 799 YKPGNPPAEIGQNISSNSSA--SILESKS-------LYDEVAAQGEVVRKLKAEKSPKAK 849
+ P NP +I + + +S +ILE L +A Q ++ ++ + K
Sbjct: 475 WHPANPAEKIIRVLFPGNSTQYNILEGLEKLKHLDFLKQPLATQKDLTGQVPTPVVKQTK 534
Query: 850 INEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSSDSSPTRNSEPAGLETPEAKVLFDKVA 909
+ + + SLK K +P + +S + +P ++ +E P +KV
Sbjct: 535 LKQRADSRESLKPAAKP------LPSKSVRKESKEETP-EVTKVNHVEKPPKVESKEKVM 587
Query: 910 SQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAEDKDKKKKEKE 969
+ + K +T+ + ++ + +E +KA+ + KP +A K + K + E
Sbjct: 588 VKKDKPIKTETKPSVTEKEVPSKEEPSPVKAEVAEKQATDVKPKAAKEKTVKKETKVKPE 647
Query: 970 NKSEKQNKPQKQ-NDGQRKDPSKNQGGGLSSSGAGEGQGPKKQ---TRLGLEAKKEE 1022
+K E++ KP+K+ + K P K + + PKK+ + E KKEE
Sbjct: 648 DKKEEKEKPKKEVAKKEDKTPIKKE------------EKPKKEEVKKEVKKEIKKEE 692
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 [Homo
sapiens]
Length = 916
Score = 42.7 bits (99), Expect = 0.003
Identities = 74/341 (21%), Positives = 136/341 (39%), Gaps = 55/341 (16%)
Query: 707 TKEMPTSGSKEKTKVEATKNETSAPFKERPTPSLNNNCTTSEDSLVLYNRVAVQGDVVRE 766
T+E+ S +EK EA + + P E E+ + V V+E
Sbjct: 477 TEELAVSMKEEKK--EAAEEKEEEPEAEE------------EEVAAKKSPVKATAPEVKE 522
Query: 767 LKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYKPGNPPAEIGQNISSNSSASI------ 820
+ +K +E + ++ K++ E+ G E K G+ E G+ + A
Sbjct: 523 EEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSE-KEGSSEKEEGEQEEGETEAEAEGEEAE 581
Query: 821 ------LESKSLYDEVAAQGEVVRKLKAEKSPKAK-------INEAVECLLSLKAQYKEK 867
+E KS +EVA + E+V K EK KAK + E + + K+ +EK
Sbjct: 582 AKEEKKVEEKS--EEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVP-KSPVEEK 638
Query: 868 TGKEYIPGQP------------PLSQSSDSSPTRNSEPAGLETPEAKVLFDKVASQGEVV 915
GK +P P P+ + S +++ ++P K ++ S+ EV
Sbjct: 639 -GKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVG 697
Query: 916 RKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYK---PVSATGAEDKDKKKKEKENKS 972
+ + E+ K+ + +E ++ K + + + K PV + K +
Sbjct: 698 KGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHL 757
Query: 973 EKQNKPQKQNDGQRKDPSKNQG-GGLSSSGAGEG-QGPKKQ 1011
EK+ K + + Q K+ K G GG G+ +G +G +K+
Sbjct: 758 EKETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSRKE 798
Score = 39.3 bits (90), Expect = 0.029
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 35/187 (18%)
Query: 876 QPPLSQSSDSSPTRNSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQEL 935
+PP++ SS + +E P+ KV V E K++ EK+ ++ A+ E
Sbjct: 427 RPPITISSKIQKPK------VEAPKLKVQHKFVEEIIEET-KVEDEKSEMEEALTAITEE 479
Query: 936 LQLKAQYKSLIGVEYK----------------PVSATGAEDKDKK--------KKEKENK 971
L + + + E K PV AT E K+++ ++E+E +
Sbjct: 480 LAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEE 539
Query: 972 SEKQNKPQKQNDGQRKDPSKNQGGGLSSSGAGEGQGPKKQTRLGLEAKKEENLADWYSQV 1031
E Q + G K+ S + G G E + ++ EAK+E+ + + +V
Sbjct: 540 DEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEA----EAKEEKKVEEKSEEV 595
Query: 1032 ITKSEMI 1038
TK E++
Sbjct: 596 ATKEELV 602
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 [Homo
sapiens]
Length = 540
Score = 42.7 bits (99), Expect = 0.003
Identities = 74/341 (21%), Positives = 136/341 (39%), Gaps = 55/341 (16%)
Query: 707 TKEMPTSGSKEKTKVEATKNETSAPFKERPTPSLNNNCTTSEDSLVLYNRVAVQGDVVRE 766
T+E+ S +EK EA + + P E E+ + V V+E
Sbjct: 101 TEELAVSMKEEKK--EAAEEKEEEPEAEE------------EEVAAKKSPVKATAPEVKE 146
Query: 767 LKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYKPGNPPAEIGQNISSNSSASI------ 820
+ +K +E + ++ K++ E+ G E K G+ E G+ + A
Sbjct: 147 EEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSE-KEGSSEKEEGEQEEGETEAEAEGEEAE 205
Query: 821 ------LESKSLYDEVAAQGEVVRKLKAEKSPKAK-------INEAVECLLSLKAQYKEK 867
+E KS +EVA + E+V K EK KAK + E + + K+ +EK
Sbjct: 206 AKEEKKVEEKS--EEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVP-KSPVEEK 262
Query: 868 TGKEYIPGQP------------PLSQSSDSSPTRNSEPAGLETPEAKVLFDKVASQGEVV 915
GK +P P P+ + S +++ ++P K ++ S+ EV
Sbjct: 263 -GKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVG 321
Query: 916 RKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYK---PVSATGAEDKDKKKKEKENKS 972
+ + E+ K+ + +E ++ K + + + K PV + K +
Sbjct: 322 KGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHL 381
Query: 973 EKQNKPQKQNDGQRKDPSKNQG-GGLSSSGAGEG-QGPKKQ 1011
EK+ K + + Q K+ K G GG G+ +G +G +K+
Sbjct: 382 EKETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSRKE 422
Score = 39.3 bits (90), Expect = 0.029
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 35/187 (18%)
Query: 876 QPPLSQSSDSSPTRNSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQEL 935
+PP++ SS + +E P+ KV V E K++ EK+ ++ A+ E
Sbjct: 51 RPPITISSKIQKPK------VEAPKLKVQHKFVEEIIEET-KVEDEKSEMEEALTAITEE 103
Query: 936 LQLKAQYKSLIGVEYK----------------PVSATGAEDKDKK--------KKEKENK 971
L + + + E K PV AT E K+++ ++E+E +
Sbjct: 104 LAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEE 163
Query: 972 SEKQNKPQKQNDGQRKDPSKNQGGGLSSSGAGEGQGPKKQTRLGLEAKKEENLADWYSQV 1031
E Q + G K+ S + G G E + ++ EAK+E+ + + +V
Sbjct: 164 DEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEA----EAKEEKKVEEKSEEV 219
Query: 1032 ITKSEMI 1038
TK E++
Sbjct: 220 ATKEELV 226
>gi|208879470 eukaryotic translation elongation factor 1 epsilon 1
isoform 2 [Homo sapiens]
Length = 139
Score = 42.4 bits (98), Expect = 0.003
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 39 ILHVSENVIFTDVNSILRYLARVATTAGLYGSNLMEHTEIDHWLEFSATKL---SSCDSF 95
+L + T + +I +L + A L GS E + WLE+ T++ SS +
Sbjct: 32 VLQTNNGPSLTGLTTIAAHLVKQANKEYLLGSTAEEKAIVQQWLEYRVTQVDGHSSKNDI 91
Query: 96 TSTINELNHCLSLRTYLVGNSLSLADLCVW 125
+ + +LN L + YL G + +LAD+ ++
Sbjct: 92 HTLLKDLNSYLEDKVYLTGYNFTLADILLY 121
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 42.4 bits (98), Expect = 0.003
Identities = 84/366 (22%), Positives = 155/366 (42%), Gaps = 60/366 (16%)
Query: 707 TKEMPTSGSKEKTKVEATKNETSAPFKERPTPSLNNNCTTSEDSLVLYNRVAVQGDVVRE 766
+KE TS + T+ + K+ T P +++ T ++S+ + D E
Sbjct: 1413 SKEARTSDKHDSTRASSNKDFT--PNRDKKTDYDTREYSSSK-----------RRDEKNE 1459
Query: 767 LKAKK-APKEDVDAAVKQLLSLKAEY---KEKTGQEYKPGNPPAEIGQ----NISSNSSA 818
L +K +P + D+A Q + E K+ TG K + P+ + + ++
Sbjct: 1460 LTRRKDSPSRNKDSASGQKNKPREERDLPKKGTGDSKKSNSSPSRDRKPHDHKATYDTKR 1519
Query: 819 SILESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEK--TG---KEYI 873
E+KS+ D+ + L+A + ++ N+ + L + Q +++ TG K +
Sbjct: 1520 PNEETKSV-DKNPCKDREKHVLEARNNKESSGNKLLYILNPPETQVEKEQITGQIDKSTV 1578
Query: 874 PGQPPLSQSS--DSSPTRNSEPAGLETP------EAKVLFDKVASQGEVVRKLK---TEK 922
+P LS SS S TR ++ A E E+ V + S G + + LK EK
Sbjct: 1579 KPKPQLSHSSRLSSDLTRETDEAAFEPDYNESDSESNVSVKEEESSGNISKDLKDKIVEK 1638
Query: 923 APKDQVDIAVQELLQLKAQYKSLIGVE----YKPV---------SATGAEDKD--KKKKE 967
A + AV ++ + Q S V + P SA+ AE +D KKKK+
Sbjct: 1639 AKESLDTAAVVQVGISRNQSHSSPSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKK 1698
Query: 968 KENKSEKQNKPQKQNDGQRKDPSKNQGGGLSSSGAGEGQGPKKQTRLGLEAKKEENLADW 1027
KE K K++K K++ K+ G + + + + KK+++ + +KE+ D
Sbjct: 1699 KEKKKHKKHKKHKKH-------KKHAGTEVELEKSQKHKHKKKKSKKNKDKEKEKEKDDQ 1751
Query: 1028 YSQVIT 1033
+ +T
Sbjct: 1752 KVKSVT 1757
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 42.4 bits (98), Expect = 0.003
Identities = 84/366 (22%), Positives = 155/366 (42%), Gaps = 60/366 (16%)
Query: 707 TKEMPTSGSKEKTKVEATKNETSAPFKERPTPSLNNNCTTSEDSLVLYNRVAVQGDVVRE 766
+KE TS + T+ + K+ T P +++ T ++S+ + D E
Sbjct: 1447 SKEARTSDKHDSTRASSNKDFT--PNRDKKTDYDTREYSSSK-----------RRDEKNE 1493
Query: 767 LKAKK-APKEDVDAAVKQLLSLKAEY---KEKTGQEYKPGNPPAEIGQ----NISSNSSA 818
L +K +P + D+A Q + E K+ TG K + P+ + + ++
Sbjct: 1494 LTRRKDSPSRNKDSASGQKNKPREERDLPKKGTGDSKKSNSSPSRDRKPHDHKATYDTKR 1553
Query: 819 SILESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEK--TG---KEYI 873
E+KS+ D+ + L+A + ++ N+ + L + Q +++ TG K +
Sbjct: 1554 PNEETKSV-DKNPCKDREKHVLEARNNKESSGNKLLYILNPPETQVEKEQITGQIDKSTV 1612
Query: 874 PGQPPLSQSS--DSSPTRNSEPAGLETP------EAKVLFDKVASQGEVVRKLK---TEK 922
+P LS SS S TR ++ A E E+ V + S G + + LK EK
Sbjct: 1613 KPKPQLSHSSRLSSDLTRETDEAAFEPDYNESDSESNVSVKEEESSGNISKDLKDKIVEK 1672
Query: 923 APKDQVDIAVQELLQLKAQYKSLIGVE----YKPV---------SATGAEDKD--KKKKE 967
A + AV ++ + Q S V + P SA+ AE +D KKKK+
Sbjct: 1673 AKESLDTAAVVQVGISRNQSHSSPSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKK 1732
Query: 968 KENKSEKQNKPQKQNDGQRKDPSKNQGGGLSSSGAGEGQGPKKQTRLGLEAKKEENLADW 1027
KE K K++K K++ K+ G + + + + KK+++ + +KE+ D
Sbjct: 1733 KEKKKHKKHKKHKKH-------KKHAGTEVELEKSQKHKHKKKKSKKNKDKEKEKEKDDQ 1785
Query: 1028 YSQVIT 1033
+ +T
Sbjct: 1786 KVKSVT 1791
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 40.8 bits (94), Expect = 0.010
Identities = 51/256 (19%), Positives = 98/256 (38%), Gaps = 25/256 (9%)
Query: 772 APKEDVDAAVKQLLSLKAEYKEKTGQ-EYKPGNPPAEIGQNISSNSSAS-------ILES 823
A KE + KQ + +K E + + + E + + P E+ + + ++E+
Sbjct: 349 AEKEQEEEEQKQEMEVKMEEETEVRESEKQQDSQPEEVMDVLEMVENVKHVIADQEVMET 408
Query: 824 KSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECL---------LSLKAQYKEKTGKEYIP 874
+ ++ E ++L+ E + + ++ + L L ++ + +EK KE P
Sbjct: 409 NRVESVEPSENEASKELEPEMEFEIEPDKECKSLSPGKENVSALDMEKESEEKEEKESEP 468
Query: 875 GQPPLSQSSDSSPTRNSEPA-GLETPEAKVLFDKVASQGEVVRKLKTEKAPK--DQVDIA 931
P++Q P S+P L++ VL + SQ E + + P+ +
Sbjct: 469 QPEPVAQ-----PQPQSQPQLQLQSQSQPVLQSQPPSQPEDLSLAVLQPTPQVTQEQGHL 523
Query: 932 VQELLQLKAQYKSLIGVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDPSK 991
+ E + L V +PV E K K K ++ +NK K S
Sbjct: 524 LPERKDFPVESVKLTEVPVEPVLTVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSS 583
Query: 992 NQGGGLSSSGAGEGQG 1007
+ SSSG+ G
Sbjct: 584 SSSSTSSSSGSSSSSG 599
>gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo
sapiens]
Length = 788
Score = 40.8 bits (94), Expect = 0.010
Identities = 60/262 (22%), Positives = 108/262 (41%), Gaps = 54/262 (20%)
Query: 760 QGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYKPGNPPAEIGQN------IS 813
QG+V+ ++ K PKE + L + E + P P ++G + ++
Sbjct: 263 QGEVIVSIEEK--PKEVSEEQPVVTLEKQGTAVEVEAESLDPTVKPVDVGGDEPEEKVVT 320
Query: 814 SNSSASILESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEKTGKE-- 871
S + A K++ +++ Q EV AE+SP+ A + ++ EK G+E
Sbjct: 321 SENEAG----KAVLEQLVGQ-EVP---PAEESPEVTTEAAEASAVEAGSEVSEKPGQEAP 372
Query: 872 ------------YIPGQPPLS-QSSDSSPTRNSEPAGLETP----------EAKVLFDKV 908
+ Q P+ Q+S T + +GLE E K+ ++
Sbjct: 373 VLPKDGAVNGPSVVGDQTPIEPQTSIERLTETKDGSGLEEKVRAKLVPSQEETKLSVEES 432
Query: 909 ASQGE----VVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAEDKDK- 963
+ G+ V + TEK+P+D+V IA E Q + + + G+E+ DK
Sbjct: 433 EAAGDGVDTKVAQGATEKSPEDKVQIAANEETQEREEQMK------EGEETEGSEEDDKE 486
Query: 964 --KKKEKENKSEKQNKPQKQND 983
K +E N S +NK ++N+
Sbjct: 487 NDKTEEMPNDSVLENKSLQENE 508
>gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo
sapiens]
Length = 790
Score = 40.8 bits (94), Expect = 0.010
Identities = 60/262 (22%), Positives = 108/262 (41%), Gaps = 54/262 (20%)
Query: 760 QGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYKPGNPPAEIGQN------IS 813
QG+V+ ++ K PKE + L + E + P P ++G + ++
Sbjct: 265 QGEVIVSIEEK--PKEVSEEQPVVTLEKQGTAVEVEAESLDPTVKPVDVGGDEPEEKVVT 322
Query: 814 SNSSASILESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEKTGKE-- 871
S + A K++ +++ Q EV AE+SP+ A + ++ EK G+E
Sbjct: 323 SENEAG----KAVLEQLVGQ-EVP---PAEESPEVTTEAAEASAVEAGSEVSEKPGQEAP 374
Query: 872 ------------YIPGQPPLS-QSSDSSPTRNSEPAGLETP----------EAKVLFDKV 908
+ Q P+ Q+S T + +GLE E K+ ++
Sbjct: 375 VLPKDGAVNGPSVVGDQTPIEPQTSIERLTETKDGSGLEEKVRAKLVPSQEETKLSVEES 434
Query: 909 ASQGE----VVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAEDKDK- 963
+ G+ V + TEK+P+D+V IA E Q + + + G+E+ DK
Sbjct: 435 EAAGDGVDTKVAQGATEKSPEDKVQIAANEETQEREEQMK------EGEETEGSEEDDKE 488
Query: 964 --KKKEKENKSEKQNKPQKQND 983
K +E N S +NK ++N+
Sbjct: 489 NDKTEEMPNDSVLENKSLQENE 510
>gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo
sapiens]
Length = 750
Score = 40.0 bits (92), Expect = 0.017
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 23/186 (12%)
Query: 841 KAEKSPKAKINEAVECLLSLKAQYKEKTGKEYI----PGQPPLSQSSDSSPTRNSEPAGL 896
K+ SP K + V L+L A+ K GK P P L +S + P + S PA L
Sbjct: 365 KSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPALRINSGAGPLKASVPAAL 424
Query: 897 ETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYK---SLIGVEYKPV 953
+P A+V + + V K A+QE Q+K Q + ++ + V
Sbjct: 425 ASPSARVSTIGYLNDHDAVTK-------------AIQEARQMKEQLRREQQVLDGKVAVV 471
Query: 954 SATGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDPSKNQGGGLSSSGAGEGQGPKKQTR 1013
++ G + +K++ +S Q KQN+ + + + SG +G ++R
Sbjct: 472 NSLGLNNCRTEKEKTTLESLTQQLAVKQNEEGKFSHAMMD---FNLSGDSDGSAGVSESR 528
Query: 1014 LGLEAK 1019
+ E++
Sbjct: 529 IYRESR 534
>gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo
sapiens]
Length = 763
Score = 40.0 bits (92), Expect = 0.017
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 23/186 (12%)
Query: 841 KAEKSPKAKINEAVECLLSLKAQYKEKTGKEYI----PGQPPLSQSSDSSPTRNSEPAGL 896
K+ SP K + V L+L A+ K GK P P L +S + P + S PA L
Sbjct: 378 KSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPALRINSGAGPLKASVPAAL 437
Query: 897 ETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYK---SLIGVEYKPV 953
+P A+V + + V K A+QE Q+K Q + ++ + V
Sbjct: 438 ASPSARVSTIGYLNDHDAVTK-------------AIQEARQMKEQLRREQQVLDGKVAVV 484
Query: 954 SATGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDPSKNQGGGLSSSGAGEGQGPKKQTR 1013
++ G + +K++ +S Q KQN+ + + + SG +G ++R
Sbjct: 485 NSLGLNNCRTEKEKTTLESLTQQLAVKQNEEGKFSHAMMD---FNLSGDSDGSAGVSESR 541
Query: 1014 LGLEAK 1019
+ E++
Sbjct: 542 IYRESR 547
>gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens]
Length = 625
Score = 40.0 bits (92), Expect = 0.017
Identities = 54/278 (19%), Positives = 117/278 (42%), Gaps = 38/278 (13%)
Query: 774 KEDVDAAVKQLLSLKAEYKEKTGQEYKPGNPPAEIGQNISSNSSASILESKSLYDEVAAQ 833
+E +L +AEY++ GQ+ +++S S+ + L +++
Sbjct: 307 REQTTGLAAELQQQQAEYEDLMGQK-----------DDLNSQLQESLRANSRLLEQLQEI 355
Query: 834 GEVVRKL--------KAEKSPKAKINEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSSDS 885
G+ +L K+ + KA ++E L K+Q+KE+ G + + +
Sbjct: 356 GQEKEQLTQELQEARKSAEKRKAMLDELAMETLQEKSQHKEELGAVRLRHEKEVL----- 410
Query: 886 SPTRNSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSL 945
A E ++ DK + E+ +++ EKA +++ Q + +L+AQ S+
Sbjct: 411 -----GVRARYERELRELHEDKKRQEEELRGQIREEKARTRELETLQQTVEELQAQVHSM 465
Query: 946 IGV----EYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDPSKNQGGG---LS 998
G E + A G E++ + +++ +++++ + K K+ G L
Sbjct: 466 DGAKGWFERRLKEAEGKEEELQDVRDQLEQAQEERDCHLKTISSLKQEVKDTVDGQRILE 525
Query: 999 SSGAGEGQGPKKQTRLGLEAKKEENLADWYSQVITKSE 1036
G+ + K+Q L LE K+ + L + ++T S+
Sbjct: 526 KKGSAALKDLKRQ--LHLERKRADKLQERLQDILTNSK 561
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 39.7 bits (91), Expect = 0.022
Identities = 73/358 (20%), Positives = 132/358 (36%), Gaps = 30/358 (8%)
Query: 709 EMPTSGSKEKTKVEATKNETSAPFKERPTPSLNNNCTTSEDSL-----VLYNRVAVQGDV 763
++P S E + +E A KE S +++ T + + LY+ G
Sbjct: 677 KLPKSKQSETVDQNSDSDEMLAILKEVSRMSHSSSSDTDINEIHTNHKTLYDLKTQAGKD 736
Query: 764 VRELKAKKAPKEDVDAAVKQLLSLKAEY--KEKTGQEYKPGNPPAEIGQNISSNSSASIL 821
+ + +K+ D K+ S K+ K+K + + N +E+ + I S S
Sbjct: 737 DKGKRKRKSSTSGSDFDTKKGKSAKSSIISKKKRQTQSESSNYDSELEKEIKSMSKIGAA 796
Query: 822 ESK-----------SLYDEVAA------QGEVVRKLKAE-KSPKAKINEAVECLLSLKAQ 863
+ S DE + QG K E S A+ + E S +
Sbjct: 797 RTTKKRIPNTKDFDSSEDEKHSKKGMDNQGHKNLKTSQEGSSDDAERKQERETFSSAEGT 856
Query: 864 YKEKTGKEYIPGQPPLSQSSDSSPTRNSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKA 923
+ T + + P Q + +S + +G E + KVA E + LKT+
Sbjct: 857 VDKDTTIMELRDRLPKKQQASASTDGVDKLSGKEQSFTSLEVRKVAETKEKSKHLKTKTC 916
Query: 924 PKDQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQND 983
K Q ++ LK + K S G E+K K K+ + + + + +D
Sbjct: 917 KKVQDGLSDIAEKFLKKDQSDETSEDDKKQSKKGTEEKKKPSDFKKKVIKMEQQYESSSD 976
Query: 984 GQRKDPSKNQ----GGGLSSSGAGEGQGPKKQTRL-GLEAKKEENLADWYSQVITKSE 1036
G K P + + G+ G G KK ++ +KK++ L+D+ + K +
Sbjct: 977 GTEKLPEREEICHFPKGIKQIKNGTTDGEKKSKKIRDKTSKKKDELSDYAEKSTGKGD 1034
Score = 36.2 bits (82), Expect = 0.25
Identities = 47/241 (19%), Positives = 102/241 (42%), Gaps = 34/241 (14%)
Query: 755 NRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQ--EYKPGNPPAEIGQNI 812
NR+A + ++ E+KA + ED + + E K++TG+ E PG+ A+ N
Sbjct: 1231 NRIAKKM-LLEEIKANLSSDEDGSSDDEP-----EEGKKRTGKQNEENPGDEEAKNQVNS 1284
Query: 813 SSNSSASILESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEKTGKEY 872
S+S + + + V ++ + K K E E +K + + K E
Sbjct: 1285 ESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKE----VKGRNRRKVSSED 1340
Query: 873 IPGQPPLSQSSDSSPTRNSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAV 932
S+ SD + SE S+ E ++ +T A K +++
Sbjct: 1341 -------SEDSDFQESGVSEEV---------------SESEDEQRPRTRSAKKAELEENQ 1378
Query: 933 QELLQLKAQYKSLIGVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDPSKN 992
+ Q K + + + + + + +E+++++K+E+E + E++ + ++ + K P K
Sbjct: 1379 RSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKG 1438
Query: 993 Q 993
+
Sbjct: 1439 R 1439
Score = 31.2 bits (69), Expect = 7.9
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 939 KAQYKSLIGVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDPSKNQGGGLS 998
K +Y+ + + +K + G ++KK K KE+K K +K + +D S Q G+S
Sbjct: 1295 KPRYRHRL-LRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSSEDSED-SDFQESGVS 1352
Query: 999 SSGAGEGQGPKKQTRLGLEAKKEEN 1023
+ + +TR +A+ EEN
Sbjct: 1353 EEVSESEDEQRPRTRSAKKAELEEN 1377
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 39.7 bits (91), Expect = 0.022
Identities = 73/358 (20%), Positives = 132/358 (36%), Gaps = 30/358 (8%)
Query: 709 EMPTSGSKEKTKVEATKNETSAPFKERPTPSLNNNCTTSEDSL-----VLYNRVAVQGDV 763
++P S E + +E A KE S +++ T + + LY+ G
Sbjct: 715 KLPKSKQSETVDQNSDSDEMLAILKEVSRMSHSSSSDTDINEIHTNHKTLYDLKTQAGKD 774
Query: 764 VRELKAKKAPKEDVDAAVKQLLSLKAEY--KEKTGQEYKPGNPPAEIGQNISSNSSASIL 821
+ + +K+ D K+ S K+ K+K + + N +E+ + I S S
Sbjct: 775 DKGKRKRKSSTSGSDFDTKKGKSAKSSIISKKKRQTQSESSNYDSELEKEIKSMSKIGAA 834
Query: 822 ESK-----------SLYDEVAA------QGEVVRKLKAE-KSPKAKINEAVECLLSLKAQ 863
+ S DE + QG K E S A+ + E S +
Sbjct: 835 RTTKKRIPNTKDFDSSEDEKHSKKGMDNQGHKNLKTSQEGSSDDAERKQERETFSSAEGT 894
Query: 864 YKEKTGKEYIPGQPPLSQSSDSSPTRNSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKA 923
+ T + + P Q + +S + +G E + KVA E + LKT+
Sbjct: 895 VDKDTTIMELRDRLPKKQQASASTDGVDKLSGKEQSFTSLEVRKVAETKEKSKHLKTKTC 954
Query: 924 PKDQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQND 983
K Q ++ LK + K S G E+K K K+ + + + + +D
Sbjct: 955 KKVQDGLSDIAEKFLKKDQSDETSEDDKKQSKKGTEEKKKPSDFKKKVIKMEQQYESSSD 1014
Query: 984 GQRKDPSKNQ----GGGLSSSGAGEGQGPKKQTRL-GLEAKKEENLADWYSQVITKSE 1036
G K P + + G+ G G KK ++ +KK++ L+D+ + K +
Sbjct: 1015 GTEKLPEREEICHFPKGIKQIKNGTTDGEKKSKKIRDKTSKKKDELSDYAEKSTGKGD 1072
Score = 36.2 bits (82), Expect = 0.25
Identities = 47/241 (19%), Positives = 102/241 (42%), Gaps = 34/241 (14%)
Query: 755 NRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQ--EYKPGNPPAEIGQNI 812
NR+A + ++ E+KA + ED + + E K++TG+ E PG+ A+ N
Sbjct: 1269 NRIAKKM-LLEEIKANLSSDEDGSSDDEP-----EEGKKRTGKQNEENPGDEEAKNQVNS 1322
Query: 813 SSNSSASILESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEKTGKEY 872
S+S + + + V ++ + K K E E +K + + K E
Sbjct: 1323 ESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKE----VKGRNRRKVSSED 1378
Query: 873 IPGQPPLSQSSDSSPTRNSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAV 932
S+ SD + SE S+ E ++ +T A K +++
Sbjct: 1379 -------SEDSDFQESGVSEEV---------------SESEDEQRPRTRSAKKAELEENQ 1416
Query: 933 QELLQLKAQYKSLIGVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDPSKN 992
+ Q K + + + + + + +E+++++K+E+E + E++ + ++ + K P K
Sbjct: 1417 RSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKG 1476
Query: 993 Q 993
+
Sbjct: 1477 R 1477
Score = 31.2 bits (69), Expect = 7.9
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 939 KAQYKSLIGVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDPSKNQGGGLS 998
K +Y+ + + +K + G ++KK K KE+K K +K + +D S Q G+S
Sbjct: 1333 KPRYRHRL-LRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSSEDSED-SDFQESGVS 1390
Query: 999 SSGAGEGQGPKKQTRLGLEAKKEEN 1023
+ + +TR +A+ EEN
Sbjct: 1391 EEVSESEDEQRPRTRSAKKAELEEN 1415
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 38.5 bits (88), Expect = 0.050
Identities = 69/279 (24%), Positives = 105/279 (37%), Gaps = 35/279 (12%)
Query: 768 KAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYKPGNPPAEIGQNISSNSSASILESKSLY 827
K K+ KE V K+ KA +KEK ++ KP Q + + S E K+
Sbjct: 165 KEKEKGKEKVRE--KEKPEKKATHKEKIEKKEKPETKTLAKEQKKAKTAEKS--EEKTKK 220
Query: 828 DEVAAQGEVVRKLKA-----EKSP-KAKINEAVECLLSLKAQYKEKTG-----------K 870
+ + E V++ A +K+P K K E E K + K++
Sbjct: 221 EVKGGKQEKVKQTAAKVKEVQKTPSKPKEKEDKEKAAVSKHEQKDQYAFCRYMIDIFVHG 280
Query: 871 EYIPGQ-----PPLSQSSDSSPTRNSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKAPK 925
+ PGQ PPL S PT S + E K KV S+ + K +K +
Sbjct: 281 DLKPGQSPAIPPPLPTEQASRPTPASPALEEKEGEKKKAEKKVTSETKKKEKEDIKKKSE 340
Query: 926 DQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQ--KQND 983
+ I V++ KA E K + A KK EK+ S+K KP +Q
Sbjct: 341 KETAIDVEKKEPGKAS-------ETKQGTVKIAAQAAAKKDEKKEDSKKTKKPAEVEQPK 393
Query: 984 GQRKDPSKNQGGGLSSSGAGEGQGPKKQTRLGLEAKKEE 1022
G++++ + S KQ + E KEE
Sbjct: 394 GKKQEKKEKHVEPAKSPKKEHSVPSDKQVKAKTERAKEE 432
>gi|91208428 protein tyrosine phosphatase, receptor-type, zeta1
precursor [Homo sapiens]
Length = 2315
Score = 38.1 bits (87), Expect = 0.065
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 421 WEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGS 480
+++SR+ L KLT ++N VDG++ P K +IAAQG
Sbjct: 1762 YDHSRVKLAQLAEKDGKLTDYINANYVDGYNRP------------------KAYIAAQGP 1803
Query: 481 SRSVVNMEWDKIWAFNKKVI 500
+S W IW N +VI
Sbjct: 1804 LKSTAEDFWRMIWEHNVEVI 1823
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 38.1 bits (87), Expect = 0.065
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 30/188 (15%)
Query: 835 EVVRKLKAEKSPKAKINEAVECLLSLK-AQYKEKTGKEYIPGQPPLSQSSDSSPTRNSEP 893
++VR L +P+ KI E +E L L +Y T K+ G P + R
Sbjct: 261 KIVRVLFPGNAPQNKILEGLEKLRHLDFLRYPVATQKDLASGAVPTNLKPSKIKQRADSK 320
Query: 894 AGLETPEAKVLFDKVASQGEVVRK-------------LKTEKAPKDQVD----------- 929
L+ K K+A + EVV + KTEK K+ +
Sbjct: 321 ESLKAT-TKTAVSKLAKREEVVEEGAKEARSELAKELAKTEKKAKESSEKPPEKPAKPER 379
Query: 930 IAVQELLQLKAQYKSLI----GVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQ 985
+ + LKA+ + LI G ++ + E+K K+K++ K K+ K + +
Sbjct: 380 VKTESSEALKAEKRKLIKDKVGKKHLKEKISKLEEKKDKEKKEIKKERKELKKDEGRKEE 439
Query: 986 RKDPSKNQ 993
+KD K +
Sbjct: 440 KKDAKKEE 447
Score = 38.1 bits (87), Expect = 0.065
Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 11/175 (6%)
Query: 805 PAEIGQNISSNSSASILESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQY 864
P ++++S + + L+ + ++ + K S AK E VE +
Sbjct: 292 PVATQKDLASGAVPTNLKPSKIKQRADSKESLKATTKTAVSKLAKREEVVE---EGAKEA 348
Query: 865 KEKTGKEYIPGQPPLSQSSDSSPTRNSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKAP 924
+ + KE + +SS+ P + ++P ++T ++ L + RKL +K
Sbjct: 349 RSELAKELAKTEKKAKESSEKPPEKPAKPERVKTESSEALKAEK-------RKLIKDKVG 401
Query: 925 KDQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQ 979
K + + +L + K + K I E K + ++KK +KE K K KP+
Sbjct: 402 KKHLKEKISKLEEKKDKEKKEIKKERKELKKDEGRKEEKKDAKKEEK-RKDTKPE 455
Score = 33.1 bits (74), Expect = 2.1
Identities = 67/319 (21%), Positives = 127/319 (39%), Gaps = 47/319 (14%)
Query: 702 IPDGH--TKEMPTSGSKEKTKVEATKNETSAPFKERPTPSLNNNCTTSEDSLVLYNRVAV 759
+P+ H T PT G+ T+ A + T + S ++ T S + L +
Sbjct: 1255 VPEPHAATASPPTDGT---TRYSAQTDITDDSLDRKSPASSFSHSTPSGNGKYLPGAITS 1311
Query: 760 QGD--VVRELKAKKAPKEDVDAAVKQLLSLKAE-----YKEKTGQEYKPGNPPAEIGQNI 812
+ + + K+P E + + +++K E K++T ++ K P E+ Q
Sbjct: 1312 PDEHILTPDSSFSKSP-ESLPGPALEDIAIKWEDKVPGLKDRTSEQKKEPEPKDEVLQQK 1370
Query: 813 SSN-SSASILESK--SLYDEVAA---QGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKE 866
++E K ++Y + A + E V++ K + E + L K + E
Sbjct: 1371 DKTLEHKEVVEPKDTAIYQKDEALHVKNEAVKQQDKALEQKGRDLEQKDTALEQKDKALE 1430
Query: 867 KTGKEYIPGQPPLSQSSDSSPTRNSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKA-PK 925
K+ L Q + PE K DK Q + + K + PK
Sbjct: 1431 PKDKDLEEKDKALEQKD-------------KIPEEK---DKALEQKDTALEQKDKALEPK 1474
Query: 926 D----QVDIAVQELLQL-----KAQYKSLIGVEYKPVSATGAEDKDKKKKEKENKSEKQN 976
D Q D +++ ++ KA + + VE+K T AE KD+ ++ + E+++
Sbjct: 1475 DKDLEQKDRVLEQKEKIPEEKDKALDQKVRSVEHKAPEDTVAEMKDRDLEQTDKAPEQKH 1534
Query: 977 KPQKQND--GQRKDPSKNQ 993
+ Q+Q D ++KD + Q
Sbjct: 1535 QAQEQKDKVSEKKDQALEQ 1553
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,638,612
Number of Sequences: 37866
Number of extensions: 2787734
Number of successful extensions: 13247
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 237
Number of HSP's that attempted gapping in prelim test: 11817
Number of HSP's gapped (non-prelim): 1258
length of query: 1512
length of database: 18,247,518
effective HSP length: 115
effective length of query: 1397
effective length of database: 13,892,928
effective search space: 19408420416
effective search space used: 19408420416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.