Guide to the Human Genome
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Name: SEH1L Sequence: fasta or formatted (360aa) NCBI GI: 61743969
Description:

sec13-like protein isoform 2

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [421aa] sec13-like protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         27           2
 C cysteine            2.5          9           1
 D aspartate           6.1         22           2
 E glutamate           3.3         12           2
 F phenylalanine       3.3         12           1
 G glycine             6.4         23           2
 H histidine           4.2         15           1
 I isoleucine          5.0         18           1
 K lysine              5.6         20           1
 L leucine             5.6         20           1
 M methionine          2.5          9           1
 N asparagine          4.7         17           1
 P proline             3.6         13           1
 Q glutamine           3.1         11           2
 R arginine            4.7         17           2
 S serine             13.3         48           3
 T threonine           6.4         23           2
 V valine              7.5         27           1
 W tryptophan          3.6         13           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sec13-like protein isoform 2 
SEH1L                 0.992   sec13-like protein isoform 1 
SEC13                 0.186   SEC13 protein isoform 1 
SEC13                 0.175   SEC13 protein isoform 2 
WDR51B                0.068   WD repeat domain 51B 
PAFAH1B1              0.061   platelet-activating factor acetylhydrolase, isoform I...
CIAO1                 0.060   WD repeat domain 39 
SPAG16                0.057   sperm associated antigen 16 isoform 1 
APAF1                 0.055   apoptotic peptidase activating factor 1 isoform d [H...
APAF1                 0.055   apoptotic peptidase activating factor 1 isoform b [Ho...
APAF1                 0.049   apoptotic peptidase activating factor 1 isoform c [H...
APAF1                 0.049   apoptotic peptidase activating factor 1 isoform a [Ho...
TBL1Y                 0.040   transducin beta-like 1Y 
TBL1Y                 0.040   transducin beta-like 1Y 
TBL1Y                 0.040   transducin beta-like 1Y 
TBL1X                 0.039   transducin beta-like 1X isoform b 
TBL1X                 0.039   transducin beta-like 1X isoform b 
TBL1X                 0.039   transducin beta-like 1X isoform a 
TBL1X                 0.039   transducin beta-like 1X isoform a 
WDR33                 0.036   WD repeat domain 33 isoform 1 
WDR88                 0.036   PQQ repeat and WD repeat domain containing 
SNRNP40               0.035   WD repeat domain 57 (U5 snRNP specific) 
TBL1XR1               0.035   transducin (beta)-like 1 X-linked receptor 1 
PEX7                  0.035   peroxisomal biogenesis factor 7 
NLE1                  0.031   Notchless gene homolog isoform a 
WDR48                 0.031   WD repeat domain 48 
WDR5                  0.028   WD repeat domain 5 
WDR5                  0.028   WD repeat domain 5 
WDR51A                0.028   WD repeat domain 51A isoform 3 
WDR51A                0.028   WD repeat domain 51A isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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