Guide to the Human Genome
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Name: LSP1 Sequence: fasta or formatted (277aa) NCBI GI: 61742789
Description:

lymphocyte-specific protein 1 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {339aa} lymphocyte-specific protein 1 isoform 1
alt mRNA {277aa} lymphocyte-specific protein 1 isoform 2
alt mRNA {277aa} lymphocyte-specific protein 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         19           2
 C cysteine            1.1          3           1
 D aspartate           5.1         14           1
 E glutamate          12.3         34           3
 F phenylalanine       0.7          2           1
 G glycine             7.9         22           2
 H histidine           1.8          5           1
 I isoleucine          3.2          9           1
 K lysine              7.9         22           2
 L leucine             7.6         21           2
 M methionine          1.1          3           1
 N asparagine          1.1          3           1
 P proline             8.3         23           2
 Q glutamine           7.6         21           2
 R arginine            4.0         11           1
 S serine             11.2         31           2
 T threonine           5.8         16           2
 V valine              3.6         10           1
 W tryptophan          1.4          4           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lymphocyte-specific protein 1 isoform 2 
LSP1                  1.000   lymphocyte-specific protein 1 isoform 2 
LSP1                  1.000   lymphocyte-specific protein 1 isoform 2 
LSP1                  1.000   lymphocyte-specific protein 1 isoform 1 
CALD1                 0.084   caldesmon 1 isoform 5 
CALD1                 0.084   caldesmon 1 isoform 4 
CALD1                 0.084   caldesmon 1 isoform 3 
CALD1                 0.084   caldesmon 1 isoform 2 
CALD1                 0.084   caldesmon 1 isoform 1 
LOC100133284          0.062   PREDICTED: similar to hCG1791648 
LOC100133284          0.062   PREDICTED: similar to hCG1791648 
LOC100133284          0.060   PREDICTED: similar to hCG1791648 
NEFM                  0.054   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.054   neurofilament, medium polypeptide 150kDa isoform 2 ...
RPGR                  0.026   retinitis pigmentosa GTPase regulator isoform C [Hom...
RGPD3                 0.024   RANBP2-like and GRIP domain containing 3 
SLC24A1               0.022   solute carrier family 24 (sodium/potassium/calcium ex...
CDC2L1                0.022   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.022   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.022   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.022   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.022   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.022   cell division cycle 2-like 1 (PITSLRE proteins) isof...
GIGYF1                0.022   PERQ amino acid rich, with GYF domain 1 
ENAH                  0.021   enabled homolog isoform a 
ENAH                  0.021   enabled homolog isoform b 
C10orf12              0.021   hypothetical protein LOC26148 
CENPB                 0.019   centromere protein B 
NIPBL                 0.019   delangin isoform B 
NIPBL                 0.019   delangin isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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