LSP1 332

Name: LSP1	Sequence: fasta or formatted (339aa)		NCBI GI: 10880979
Description: lymphocyte-specific protein 1 isoform 1		Not currently referenced in the text
Other entries for this name: alt prot {277aa} lymphocyte-specific protein 1 isoform 2 alt prot {277aa} lymphocyte-specific protein 1 isoform 2 alt prot {277aa} lymphocyte-specific protein 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.4 25 2 C cysteine 1.2 4 1 D aspartate 5.3 18 1 E glutamate 14.5 49 3 F phenylalanine 0.6 2 1 G glycine 8.0 27 3 H histidine 2.4 8 1 I isoleucine 2.7 9 1 K lysine 6.8 23 2 L leucine 7.1 24 2 M methionine 1.2 4 1 N asparagine 0.9 3 1 P proline 8.0 27 2 Q glutamine 8.3 28 2 R arginine 4.4 15 1 S serine 10.0 34 2 T threonine 5.0 17 2 V valine 3.8 13 1 W tryptophan 1.5 5 1 Y tyrosine 1.2 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 lymphocyte-specific protein 1 isoform 1 LSP1 0.807 lymphocyte-specific protein 1 isoform 2 LSP1 0.807 lymphocyte-specific protein 1 isoform 2 LSP1 0.807 lymphocyte-specific protein 1 isoform 2 CALD1 0.069 caldesmon 1 isoform 4 CALD1 0.069 caldesmon 1 isoform 3 CALD1 0.068 caldesmon 1 isoform 5 CALD1 0.068 caldesmon 1 isoform 2 CALD1 0.068 caldesmon 1 isoform 1 LOC100133284 0.050 PREDICTED: similar to hCG1791648 LOC100133284 0.050 PREDICTED: similar to hCG1791648 NEFM 0.048 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFM 0.048 neurofilament, medium polypeptide 150kDa isoform 2 ... LOC100133284 0.048 PREDICTED: similar to hCG1791648 MYST4 0.036 MYST histone acetyltransferase (monocytic leukemia)... SRCAP 0.032 Snf2-related CBP activator protein SETD1B 0.032 SET domain containing 1B RPGR 0.030 retinitis pigmentosa GTPase regulator isoform C [Hom... AUTS2 0.029 autism susceptibility candidate 2 isoform 2 AUTS2 0.029 autism susceptibility candidate 2 isoform 1 LOC100133758 0.026 PREDICTED: hypothetical protein, partial ARHGAP30 0.026 Rho GTPase activating protein 30 isoform 1 GIGYF2 0.026 GRB10 interacting GYF protein 2 isoform a MED12 0.026 mediator complex subunit 12 NES 0.023 nestin RP1L1 0.023 retinitis pigmentosa 1-like 1 GIGYF1 0.023 PERQ amino acid rich, with GYF domain 1 ZEB1 0.023 zinc finger E-box binding homeobox 1 isoform a [Hom... ZEB1 0.023 zinc finger E-box binding homeobox 1 isoform b [Hom... ACIN1 0.023 apoptotic chromatin condensation inducer 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.