Guide to the Human Genome
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Name: LOC100133284 Sequence: fasta or formatted (127aa) NCBI GI: 169205907
Description:

PREDICTED: similar to hCG1791648

Referenced in:

Calmodulin and Calcium
WD Repeat Proteins

Other entries for this name:
alt prot [127aa] PREDICTED: similar to hCG1791648
alt prot [127aa] PREDICTED: similar to hCG1791648
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3          8           1
 C cysteine            0.8          1           1
 D aspartate           5.5          7           1
 E glutamate           5.5          7           1
 F phenylalanine       1.6          2           1
 G glycine             3.1          4           1
 H histidine           0.8          1           1
 I isoleucine          2.4          3           1
 K lysine             13.4         17           2
 L leucine             7.1          9           1
 M methionine          3.1          4           1
 N asparagine          2.4          3           1
 P proline             4.7          6           2
 Q glutamine           9.4         12           1
 R arginine            5.5          7           1
 S serine              7.9         10           2
 T threonine          10.2         13           3
 V valine              6.3          8           2
 W tryptophan          0.8          1           1
 Y tyrosine            3.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1791648 
LOC100133284          0.991   PREDICTED: similar to hCG1791648 
LOC100133284          0.982   PREDICTED: similar to hCG1791648 
STRN                  0.412   striatin, calmodulin binding protein 
STRN3                 0.364   nuclear autoantigen isoform 1 
STRN3                 0.364   nuclear autoantigen isoform 2 
STRN4                 0.311   zinedin isoform 2 
STRN4                 0.311   zinedin isoform 1 
LSP1                  0.140   lymphocyte-specific protein 1 isoform 2 
LSP1                  0.140   lymphocyte-specific protein 1 isoform 2 
LSP1                  0.140   lymphocyte-specific protein 1 isoform 2 
LSP1                  0.140   lymphocyte-specific protein 1 isoform 1 
MYH9                  0.018   myosin, heavy polypeptide 9, non-muscle 
CCDC92                0.018   coiled-coil domain containing 92 
TTN                   0.013   titin isoform N2-A 
TTN                   0.013   titin isoform novex-2 
TTN                   0.013   titin isoform novex-1 
TTN                   0.013   titin isoform N2-B 
REST                  0.013   RE1-silencing transcription factor 
SEPT8                 0.013   septin 8 isoform d 
SEPT8                 0.013   septin 8 isoform c 
SEPT8                 0.013   septin 8 isoform a 
SEPT8                 0.013   septin 8 isoform b 
CCDC40                0.013   coiled-coil domain containing 40 
AP3M2                 0.013   adaptor-related protein complex 3, mu 2 subunit [Ho...
AP3M2                 0.013   adaptor-related protein complex 3, mu 2 subunit [Homo...
LOC100133599          0.013   PREDICTED: hypothetical protein 
ATRX                  0.013   transcriptional regulator ATRX isoform 2 
ATRX                  0.013   transcriptional regulator ATRX isoform 1 
FAM188B               0.013   hypothetical protein LOC84182 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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