Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CSRNP2 Sequence: fasta or formatted (543aa) NCBI GI: 13540602
Description:

TGF-beta induced apoptosis protein 12

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         35           2
 C cysteine            3.7         20           1
 D aspartate           6.4         35           2
 E glutamate          10.3         56           2
 F phenylalanine       3.3         18           2
 G glycine             5.5         30           2
 H histidine           1.8         10           1
 I isoleucine          2.8         15           1
 K lysine              4.2         23           2
 L leucine             9.0         49           2
 M methionine          1.5          8           1
 N asparagine          3.3         18           1
 P proline             6.8         37           2
 Q glutamine           4.2         23           2
 R arginine            5.7         31           3
 S serine             11.4         62           3
 T threonine           5.3         29           2
 V valine              6.3         34           1
 W tryptophan          0.2          1           1
 Y tyrosine            1.7          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TGF-beta induced apoptosis protein 12 
CSRNP3                0.414   cysteine-serine-rich nuclear protein 3 
CSRNP1                0.225   AXIN1 up-regulated 1 
KIF4B                 0.011   kinesin family member 4B 
ZFHX4                 0.009   zinc finger homeodomain 4 
KIF4A                 0.009   kinesin family member 4 
MLXIP                 0.009   MLX interacting protein 
IL2RB                 0.009   interleukin 2 receptor beta precursor 
TUBGCP3               0.009   tubulin, gamma complex associated protein 3 
RNF219                0.009   ring finger protein 219 
DDX24                 0.008   DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 
SP110                 0.007   SP110 nuclear body protein isoform a 
SP110                 0.007   SP110 nuclear body protein isoform b 
SP110                 0.007   SP110 nuclear body protein isoform c 
ROCK1                 0.007   Rho-associated, coiled-coil containing protein kinase...
GPATCH1               0.007   G patch domain containing 1 
GLTSCR2               0.007   glioma tumor suppressor candidate region gene 2 [Ho...
ANK2                  0.007   ankyrin 2 isoform 1 
SCARF1                0.007   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.007   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.007   scavenger receptor class F, member 1 isoform 5 prec...
EAPP                  0.007   E2F-associated phosphoprotein 
RIOK2                 0.007   RIO kinase 2 isoform 1 
DCP1A                 0.007   DCP1 decapping enzyme homolog A 
LOXHD1                0.007   lipoxygenase homology domains 1 isoform 1 
ZFHX3                 0.007   AT-binding transcription factor 1 
MAST4                 0.007   microtubule associated serine/threonine kinase fami...
C9orf11               0.006   Acr formation associated factor isoform 2 
C9orf11               0.006   Acr formation associated factor isoform 1 
REV1                  0.006   REV1-like isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press