Guide to the Human Genome
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Name: DCP1A Sequence: fasta or formatted (582aa) NCBI GI: 84662781
Description:

DCP1 decapping enzyme homolog A

Referenced in:

RNases and RNA Stability

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         50           3
 C cysteine            0.5          3           1
 D aspartate           3.8         22           1
 E glutamate           6.0         35           3
 F phenylalanine       2.7         16           1
 G glycine             3.8         22           2
 H histidine           2.7         16           2
 I isoleucine          4.0         23           2
 K lysine              4.1         24           1
 L leucine            10.8         63           2
 M methionine          2.2         13           2
 N asparagine          4.1         24           1
 P proline             9.1         53           2
 Q glutamine           7.2         42           2
 R arginine            3.8         22           2
 S serine             11.5         67           2
 T threonine           7.2         42           3
 V valine              5.7         33           2
 W tryptophan          0.3          2           1
 Y tyrosine            1.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DCP1 decapping enzyme homolog A 
DCP1B                 0.183   decapping enzyme Dcp1b 
FLJ22184              0.038   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.026   nascent polypeptide-associated complex alpha subuni...
MLL2                  0.021   myeloid/lymphoid or mixed-lineage leukemia 2 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
MUC17                 0.021   mucin 17 
MDC1                  0.021   mediator of DNA-damage checkpoint 1 
SRCAP                 0.021   Snf2-related CBP activator protein 
MLL                   0.020   myeloid/lymphoid or mixed-lineage leukemia protein [...
FSCB                  0.020   fibrous sheath CABYR binding protein 
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
POM121                0.017   nuclear pore membrane protein 121 
MUC7                  0.017   mucin 7, secreted precursor 
MUC7                  0.017   mucin 7, secreted precursor 
MUC7                  0.017   mucin 7, secreted precursor 
MUC4                  0.017   mucin 4 isoform a 
WHSC2                 0.017   Wolf-Hirschhorn syndrome candidate 2 protein 
LOC100128719          0.016   PREDICTED: hypothetical protein, partial 
LOC100128719          0.016   PREDICTED: hypothetical protein, partial 
ZNF207                0.016   zinc finger protein 207 isoform c 
ZNF207                0.016   zinc finger protein 207 isoform a 
LOC100294420          0.015   PREDICTED: similar to mucin 2 
HCFC1                 0.015   host cell factor 1 
MUC16                 0.015   mucin 16 
MUC2                  0.015   mucin 2 precursor 
LOC100288540          0.015   PREDICTED: hypothetical protein XP_002342775 
MUC5B                 0.015   mucin 5, subtype B, tracheobronchial 
LOC284297             0.015   hypothetical protein LOC284297 
PCLO                  0.015   piccolo isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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