Search of human proteins with 61175237

Search of human proteins with 61175237

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A
[Homo sapiens]
         (200 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Hom...   405   e-114
gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo...   405   e-114
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]     327   5e-90
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...   318   3e-87
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...   318   3e-87
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...   318   3e-87
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s...   298   2e-81
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]     293   5e-80
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s...   258   3e-69
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]     236   1e-62
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]               105   3e-23
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila...    92   3e-19
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]                      91   9e-19
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]                      91   9e-19
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]                      91   9e-19
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]                      91   9e-19
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]                      91   9e-19
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]               90   1e-18
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]               90   1e-18
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom...    88   6e-18
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo...    88   6e-18
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo...    88   6e-18
gi|38201714 ELAV-like 1 [Homo sapiens]                                 87   1e-17
gi|188219593 TIA1 protein isoform 1 [Homo sapiens]                     81   5e-16
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]             81   7e-16
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]              81   7e-16
gi|188219591 TIA1 protein isoform 2 [Homo sapiens]                     79   3e-15
gi|4506447 RNA binding motif, single stranded interacting protei...    77   1e-14
gi|8400718 RNA binding motif, single stranded interacting protei...    77   1e-14
gi|51317355 RNA binding motif, single stranded interacting prote...    74   8e-14

>gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Homo
           sapiens]
          Length = 200

 Score =  405 bits (1042), Expect = e-114
 Identities = 200/200 (100%), Positives = 200/200 (100%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL
Sbjct: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60

Query: 61  ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
           ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK
Sbjct: 61  ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120

Query: 121 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
           VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ
Sbjct: 121 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180

Query: 181 STSADVKDFEEDTDEEATLR 200
           STSADVKDFEEDTDEEATLR
Sbjct: 181 STSADVKDFEEDTDEEATLR 200


>gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo
           sapiens]
          Length = 200

 Score =  405 bits (1042), Expect = e-114
 Identities = 200/200 (100%), Positives = 200/200 (100%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL
Sbjct: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60

Query: 61  ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
           ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK
Sbjct: 61  ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120

Query: 121 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
           VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ
Sbjct: 121 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180

Query: 181 STSADVKDFEEDTDEEATLR 200
           STSADVKDFEEDTDEEATLR
Sbjct: 181 STSADVKDFEEDTDEEATLR 200


>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
          Length = 636

 Score =  327 bits (837), Expect = 5e-90
 Identities = 157/196 (80%), Positives = 177/196 (90%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           MASLYVGDLHP+VTEAMLYEKFSPAGPILSIR+CRD ITRRSLGYAYVN+QQP DA+RAL
Sbjct: 10  MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69

Query: 61  ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
           +T+NFDVIKG+PVRIMWSQRDPSLRKSGVGN+FIKNL K+IDNKALY+ FSAFGNILSCK
Sbjct: 70  DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query: 121 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
           V CDE G KGYGFVHF+ QE+AERAI+ MNGM LN RK+FVGRFKS KEREAE GA A++
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189

Query: 181 STSADVKDFEEDTDEE 196
            T+  +K+F ED D+E
Sbjct: 190 FTNVYIKNFGEDMDDE 205



 Score =  108 bits (271), Expect = 2e-24
 Identities = 64/180 (35%), Positives = 105/180 (58%), Gaps = 9/180 (5%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           + ++++ +L   +    LY+ FS  G ILS ++  D+    S GY +V+++    A+RA+
Sbjct: 98  VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 155

Query: 61  ETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFG 114
           E +N  ++  R V +       +R+  L  R     NV+IKN G+ +D++ L ++F  FG
Sbjct: 156 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215

Query: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
             LS KV  DE G  KG+GFV F++ E A++A+D MNG  LN ++I+VGR +   ER+ E
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275



 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 52/187 (27%), Positives = 99/187 (52%), Gaps = 19/187 (10%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           ++Y+ +   ++ +  L + F   GP LS+++  D+ + +S G+ +V++++  DA++A++ 
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250

Query: 63  LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
           +N   + G+ + +  +Q+                 D   R  GV N+++KNL   ID++ 
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 309

Query: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
           L   FS FG I S KV  +    KG+GFV F   E A +A+  MNG  +  + ++V   +
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369

Query: 166 SHKEREA 172
             +ER+A
Sbjct: 370 RKEERQA 376



 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 81  DPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQK 138
           +PS     + ++++ +L   +    LY  FS  G ILS +V  D   +   GY +V+FQ+
Sbjct: 2   NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61

Query: 139 QESAERAIDVMN 150
              AERA+D MN
Sbjct: 62  PADAERALDTMN 73


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score =  318 bits (814), Expect = 3e-87
 Identities = 151/197 (76%), Positives = 176/197 (89%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           MASLYVGDLH +VTEAMLYEKFSPAGP+LSIR+CRD ITRRSLGYAYVN+QQP DA+RAL
Sbjct: 10  MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69

Query: 61  ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
           +T+NFDVIKG+P+RIMWSQRDPSLRKSGVGNVFIKNL K+IDNKALY+ FSAFGNILSCK
Sbjct: 70  DTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query: 121 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
           V CDE G KGY FVHF+ QE+A++AI+ MNGM LN RK+FVGRFKS KEREAE GA A++
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189

Query: 181 STSADVKDFEEDTDEEA 197
            T+  +K+F E+ D+E+
Sbjct: 190 FTNVYIKNFGEEVDDES 206



 Score =  103 bits (257), Expect = 1e-22
 Identities = 62/180 (34%), Positives = 104/180 (57%), Gaps = 9/180 (5%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           + ++++ +L   +    LY+ FS  G ILS ++  D+    S GYA+V+++    A +A+
Sbjct: 98  VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAI 155

Query: 61  ETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFG 114
           E +N  ++  R V +       +R+  L  +     NV+IKN G+ +D+++L  +FS FG
Sbjct: 156 EKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215

Query: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
             LS KV  D  G  KG+GFV ++K E A +A++ MNG  ++ + IFVGR +   ER+AE
Sbjct: 216 KTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275



 Score = 95.1 bits (235), Expect = 3e-20
 Identities = 60/187 (32%), Positives = 100/187 (53%), Gaps = 19/187 (10%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           ++Y+ +   EV +  L E FS  G  LS+++ RD    +S G+ +V+Y++  DA +A+E 
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 250

Query: 63  LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
           +N   I G+ + +  +Q+                 +   R  GV N++IKNL  TID++ 
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 309

Query: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
           L   FS FG+I S KV  ++   KG+GFV F   E A +A+  MNG  +  + ++V   +
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369

Query: 166 SHKEREA 172
             +ER+A
Sbjct: 370 RKEERKA 376


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score =  318 bits (814), Expect = 3e-87
 Identities = 151/197 (76%), Positives = 176/197 (89%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           MASLYVGDLH +VTEAMLYEKFSPAGP+LSIR+CRD ITRRSLGYAYVN+QQP DA+RAL
Sbjct: 10  MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69

Query: 61  ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
           +T+NFDVIKG+P+RIMWSQRDPSLRKSGVGNVFIKNL K+IDNKALY+ FSAFGNILSCK
Sbjct: 70  DTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query: 121 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
           V CDE G KGY FVHF+ QE+A++AI+ MNGM LN RK+FVGRFKS KEREAE GA A++
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189

Query: 181 STSADVKDFEEDTDEEA 197
            T+  +K+F E+ D+E+
Sbjct: 190 FTNVYIKNFGEEVDDES 206



 Score =  103 bits (257), Expect = 1e-22
 Identities = 62/180 (34%), Positives = 104/180 (57%), Gaps = 9/180 (5%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           + ++++ +L   +    LY+ FS  G ILS ++  D+    S GYA+V+++    A +A+
Sbjct: 98  VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAI 155

Query: 61  ETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFG 114
           E +N  ++  R V +       +R+  L  +     NV+IKN G+ +D+++L  +FS FG
Sbjct: 156 EKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215

Query: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
             LS KV  D  G  KG+GFV ++K E A +A++ MNG  ++ + IFVGR +   ER+AE
Sbjct: 216 KTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275



 Score = 95.1 bits (235), Expect = 3e-20
 Identities = 60/187 (32%), Positives = 100/187 (53%), Gaps = 19/187 (10%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           ++Y+ +   EV +  L E FS  G  LS+++ RD    +S G+ +V+Y++  DA +A+E 
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 250

Query: 63  LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
           +N   I G+ + +  +Q+                 +   R  GV N++IKNL  TID++ 
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 309

Query: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
           L   FS FG+I S KV  ++   KG+GFV F   E A +A+  MNG  +  + ++V   +
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369

Query: 166 SHKEREA 172
             +ER+A
Sbjct: 370 RKEERKA 376


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score =  318 bits (814), Expect = 3e-87
 Identities = 151/197 (76%), Positives = 176/197 (89%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           MASLYVGDLH +VTEAMLYEKFSPAGP+LSIR+CRD ITRRSLGYAYVN+QQP DA+RAL
Sbjct: 10  MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69

Query: 61  ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
           +T+NFDVIKG+P+RIMWSQRDPSLRKSGVGNVFIKNL K+IDNKALY+ FSAFGNILSCK
Sbjct: 70  DTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query: 121 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
           V CDE G KGY FVHF+ QE+A++AI+ MNGM LN RK+FVGRFKS KEREAE GA A++
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189

Query: 181 STSADVKDFEEDTDEEA 197
            T+  +K+F E+ D+E+
Sbjct: 190 FTNVYIKNFGEEVDDES 206



 Score =  103 bits (257), Expect = 1e-22
 Identities = 62/180 (34%), Positives = 104/180 (57%), Gaps = 9/180 (5%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           + ++++ +L   +    LY+ FS  G ILS ++  D+    S GYA+V+++    A +A+
Sbjct: 98  VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAI 155

Query: 61  ETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFG 114
           E +N  ++  R V +       +R+  L  +     NV+IKN G+ +D+++L  +FS FG
Sbjct: 156 EKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215

Query: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
             LS KV  D  G  KG+GFV ++K E A +A++ MNG  ++ + IFVGR +   ER+AE
Sbjct: 216 KTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275



 Score = 95.1 bits (235), Expect = 3e-20
 Identities = 60/187 (32%), Positives = 100/187 (53%), Gaps = 19/187 (10%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           ++Y+ +   EV +  L E FS  G  LS+++ RD    +S G+ +V+Y++  DA +A+E 
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 250

Query: 63  LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
           +N   I G+ + +  +Q+                 +   R  GV N++IKNL  TID++ 
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 309

Query: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
           L   FS FG+I S KV  ++   KG+GFV F   E A +A+  MNG  +  + ++V   +
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369

Query: 166 SHKEREA 172
             +ER+A
Sbjct: 370 RKEERKA 376


>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
           sapiens]
          Length = 614

 Score =  298 bits (763), Expect = 2e-81
 Identities = 140/196 (71%), Positives = 169/196 (86%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           +ASLYVGDLHP+VTEAMLYEKFSPAGPILSIR+CRD  TRRSLGYAY+N+QQP DA+RAL
Sbjct: 10  LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69

Query: 61  ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
           +T+NF+++KG+P+RIMWSQRDP LRKSGVGN+FIKNL  +IDNKALY+ FS FGNILSCK
Sbjct: 70  DTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129

Query: 121 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
           VACDE G +G+GFVHF+  E+A++AI+ MNGM LN RK+FVG FKS +EREAE GA A +
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189

Query: 181 STSADVKDFEEDTDEE 196
            T+  VK+   D DE+
Sbjct: 190 FTNIYVKNLPVDVDEQ 205



 Score = 91.3 bits (225), Expect = 5e-19
 Identities = 55/180 (30%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           + ++++ +L   +    LY+ FS  G ILS ++  D+    S G+ +V+++    A++A+
Sbjct: 98  VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAI 155

Query: 61  ETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFG 114
            T+N  ++  R V +       +R+  L  R     N+++KNL   +D + L ++FS FG
Sbjct: 156 NTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG 215

Query: 115 NILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
            +LS KV  D  G  + +GFV+F+K E A++A+  MNG  ++ R ++ GR +   ER+ E
Sbjct: 216 KMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275



 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           ++YV +L  +V E  L + FS  G +LS+++ RD  +  S  + +VN+++  +A++A+  
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVH 250

Query: 63  LNFDVIKGRPV-----------------RIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKA 105
           +N   + GR +                 R    ++D   R  GV N+++KNL  +ID+  
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV-NLYVKNLDDSIDDDK 309

Query: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
           L   FS +G I S KV  +    KG+GFV F   E A +A+  MNG  +  + ++V   +
Sbjct: 310 LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369

Query: 166 SHKEREA 172
             +ER+A
Sbjct: 370 RKEERKA 376


>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
          Length = 631

 Score =  293 bits (751), Expect = 5e-80
 Identities = 143/195 (73%), Positives = 164/195 (84%)

Query: 2   ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
           ASLYVGDLHP+VTEAMLYEKFSPAGPILSIRICRD IT  S  YAYVN+Q   DA+ AL+
Sbjct: 11  ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70

Query: 62  TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
           T+NFDVIKG+PVRIMWSQRDPSLRKSGVGN+F+KNL K+I+NKALY+  SAFGNILSC V
Sbjct: 71  TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130

Query: 122 ACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
            CDE G KGYGFVHF+  E+AERAI  MNGM LN RK+FVG+FKS KEREAE GA A++ 
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEF 190

Query: 182 TSADVKDFEEDTDEE 196
            +  +K+F ED D+E
Sbjct: 191 PNVYIKNFGEDMDDE 205



 Score =  107 bits (266), Expect = 9e-24
 Identities = 64/180 (35%), Positives = 104/180 (57%), Gaps = 9/180 (5%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           + +++V +L   +    LY+  S  G ILS  +  D+    S GY +V+++    A+RA+
Sbjct: 98  VGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAI 155

Query: 61  ETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFG 114
           + +N  ++ GR V +       +R+  L  R     NV+IKN G+ +D++ L ++F  FG
Sbjct: 156 KKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFG 215

Query: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
             LS KV  DE G  KG+GFV F++ E A++A+D MNG  LN ++I+VGR +   ER+ E
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275



 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 51/186 (27%), Positives = 100/186 (53%), Gaps = 17/186 (9%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           ++Y+ +   ++ +  L + F   GP LS+++  D+ + +S G+ +V++++  DA++A++ 
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250

Query: 63  LNFDVIKGRPVRIMWSQ----RDPSLRKS------------GVGNVFIKNLGKTIDNKAL 106
           +N   + G+ + +  +Q    R   L+++             V N+++KNL   ID++ L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERL 310

Query: 107 YNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKS 166
              FS FG I S KV  +    KG+GFV F   E A +A+  MNG  +  + ++V   + 
Sbjct: 311 RKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370

Query: 167 HKEREA 172
            +ER+A
Sbjct: 371 KEERQA 376



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 81  DPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQK 138
           +PS       ++++ +L   +    LY  FS  G ILS ++  D    G   Y +V+FQ 
Sbjct: 2   NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61

Query: 139 QESAERAIDVMN 150
            + AE A+D MN
Sbjct: 62  TKDAEHALDTMN 73



 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           + +LYV +L   + +  L + FSP G I S ++  +    RS G+ +V +  P +A +A+
Sbjct: 293 VVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV 350

Query: 61  ETLNFDVIKGRPVRIMWSQR 80
             +N  ++  +P+ +  +QR
Sbjct: 351 TEMNGRIVATKPLYVALAQR 370


>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
           sapiens]
          Length = 370

 Score =  258 bits (658), Expect = 3e-69
 Identities = 124/196 (63%), Positives = 156/196 (79%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           MASLYVGDLH +VTE +L+ KFS  GP+LSIRICRD++TRRSLGYAYVN+ Q  DA++AL
Sbjct: 9   MASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKAL 68

Query: 61  ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
           +T+NFD+IKG+ +R+MWSQRD  LR+SG+GNVFIKNL K+IDNK LY  FSAFG ILS K
Sbjct: 69  DTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSK 128

Query: 121 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
           V  D++G KGY FVHFQ Q +A+RAI+ MNG  L   K+FVGRFK+ K+REAE  + A +
Sbjct: 129 VMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 188

Query: 181 STSADVKDFEEDTDEE 196
            T+  +K+F  D D+E
Sbjct: 189 FTNVYIKNFGGDMDDE 204



 Score =  111 bits (277), Expect = 5e-25
 Identities = 68/180 (37%), Positives = 104/180 (57%), Gaps = 9/180 (5%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           + ++++ +L   +    LYE FS  G ILS ++  D   + S GYA+V++Q    A RA+
Sbjct: 97  IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDD--QGSKGYAFVHFQNQSAADRAI 154

Query: 61  ETLNFDVIKGRPVRI----MWSQRDPSLRK--SGVGNVFIKNLGKTIDNKALYNIFSAFG 114
           E +N  ++KG  V +        R+  LR   S   NV+IKN G  +D++ L ++FS +G
Sbjct: 155 EEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYG 214

Query: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
             LS KV  D  G  KG+GFV F   E+A++A++ MNG  +N + IFVGR +   ER+AE
Sbjct: 215 KTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274



 Score = 75.5 bits (184), Expect = 3e-14
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 19/182 (10%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           ++Y+ +   ++ +  L + FS  G  LS+++  D  + +S G+ +V++     AK+A+E 
Sbjct: 191 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEE 249

Query: 63  LNFDVIKGRPVRIMWSQ----RDPSLRK-------------SGVGNVFIKNLGKTIDNKA 105
           +N   I G+ + +  +Q    R   L++              GV  ++IKNL  TID++ 
Sbjct: 250 MNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGV-KLYIKNLDDTIDDEK 308

Query: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
           L N FS+FG+I   KV  +E   KG+G + F   E A +A+  MNG  L  + + +   +
Sbjct: 309 LRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368

Query: 166 SH 167
            H
Sbjct: 369 RH 370


>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
          Length = 382

 Score =  236 bits (602), Expect = 1e-62
 Identities = 117/196 (59%), Positives = 147/196 (75%), Gaps = 1/196 (0%)

Query: 2   ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
           A+LYVGDL P+VTE MLY+KF PAGP+   RICRD +TR  LGY YVN++ P DA+ AL 
Sbjct: 18  AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77

Query: 62  TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
           T+NFD+I G+P R+MWSQ D  LRKSGVGN+FIKNL K+IDN+AL+ +FSAFGNILSCKV
Sbjct: 78  TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137

Query: 122 ACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
            CD+ G KGY +VHF    +A RAI  MNG+ LN R+++VGRFK  +ER AE     R +
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197

Query: 182 -TSADVKDFEEDTDEE 196
            T+  VK+  +D D+E
Sbjct: 198 FTNVFVKNIGDDIDDE 213



 Score = 81.6 bits (200), Expect = 4e-16
 Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 10/181 (5%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           + ++++ +L   +    L+  FS  G ILS ++  D     S GYAYV++     A RA+
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAI 162

Query: 61  ETLNFDVIKGRPVRI----MWSQRDPSLR---KSGVGNVFIKNLGKTIDNKALYNIFSAF 113
             +N   +  R V +       +R   +R   ++   NVF+KN+G  ID++ L  +F  +
Sbjct: 163 WHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEY 222

Query: 114 GNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREA 172
           G   S KV  D  G  KG+GFV ++  E+A++A+  ++G  ++ + ++VGR +   ER A
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282

Query: 173 E 173
           E
Sbjct: 283 E 283



 Score = 70.1 bits (170), Expect = 1e-12
 Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 19/176 (10%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +++V ++  ++ +  L E F   GP  S+++ RD  + +S G+ +V Y+    A++A+  
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258

Query: 63  LNFDVIKGRPVRIMWSQRD-----------------PSLRKSGVGNVFIKNLGKTIDNKA 105
           L+   I G+ + +  +Q+                     R  GV  ++IKNL +TI+++ 
Sbjct: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETINDEK 317

Query: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFV 161
           L   FS+FG+I   KV  +    KG+G V F   E A +A+D MNG  +  + + V
Sbjct: 318 LKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373


>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
          Length = 424

 Score =  105 bits (261), Expect = 3e-23
 Identities = 62/177 (35%), Positives = 101/177 (57%), Gaps = 7/177 (3%)

Query: 2   ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
           A++YVG L  +V+E +L+E F  AGP+++  + +D++T +  GY +V +    DA  A++
Sbjct: 13  ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72

Query: 62  TLNFDVIKGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
            +N   + G+P+R+  ++     +   VG N+FI NL   ID K LY+ FSAFG IL   
Sbjct: 73  IMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130

Query: 121 VAC---DEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 174
                 D    KGY F++F   ++++ AI+ MNG +L  R I V  +   K+ + ER
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YAFKKDSKGER 186


>gi|115511032 ELAV (embryonic lethal, abnormal vision,
           Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
          Length = 359

 Score = 92.0 bits (227), Expect = 3e-19
 Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 4/151 (2%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +L V  L   +T+  L   F   G I S ++ RDKIT +SLGY +VNY  P DA++A+ T
Sbjct: 40  NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
           LN   ++ + +++ +++  PS       N+++  L KT+  K L  +FS +G I++ ++ 
Sbjct: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157

Query: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
            D+     +G GF+ F K+  AE AI  +NG
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188



 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 91  NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
           N+ +  L + +  + L ++F + G I SCK+  D+   +  GYGFV++   + AE+AI+ 
Sbjct: 40  NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99

Query: 149 MNGMFLNYRKIFV 161
           +NG+ L  + I V
Sbjct: 100 LNGLRLQTKTIKV 112



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 92  VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
           +F+ NL    D   L+ +F  FG + + KV  D      KG+GFV     + A  AI  +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 150 NGMFLNYRKIFVGRFKSHKEREA 172
           NG  L  R + V  FK++K  +A
Sbjct: 338 NGYRLGDRVLQVS-FKTNKTHKA 359


>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
          Length = 380

 Score = 90.5 bits (223), Expect = 9e-19
 Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 4/151 (2%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +L V  L   +T+      F   G I S ++ RDKIT +SLGY +VNY  P DA++A+ T
Sbjct: 47  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
           LN   ++ + +++ +++  PS       N+++  L KT+  K L  +FS +G I++ ++ 
Sbjct: 107 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 164

Query: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
            D+     +G GF+ F K+  AE AI  +NG
Sbjct: 165 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 91  NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
           N+ +  L + +  +   ++F + G I SCK+  D+   +  GYGFV++   + AE+AI+ 
Sbjct: 47  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106

Query: 149 MNGMFLNYRKIFV 161
           +NG+ L  + I V
Sbjct: 107 LNGLRLQTKTIKV 119



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 92  VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
           +F+ NL    D   L+ +F  FG + + KV  D      KG+GFV     + A  AI  +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358

Query: 150 NGMFLNYRKIFVGRFKSHKEREA 172
           NG  L  R + V  FK++K  ++
Sbjct: 359 NGYRLGDRVLQVS-FKTNKAHKS 380


>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
          Length = 369

 Score = 90.5 bits (223), Expect = 9e-19
 Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 4/151 (2%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +L V  L   +T+      F   G I S ++ RDKIT +SLGY +VNY  P DA++A+ T
Sbjct: 50  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 109

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
           LN   ++ + +++ +++  PS       N+++  L KT+  K L  +FS +G I++ ++ 
Sbjct: 110 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 167

Query: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
            D+     +G GF+ F K+  AE AI  +NG
Sbjct: 168 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 198



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 91  NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
           N+ +  L + +  +   ++F + G I SCK+  D+   +  GYGFV++   + AE+AI+ 
Sbjct: 50  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 109

Query: 149 MNGMFLNYRKIFV 161
           +NG+ L  + I V
Sbjct: 110 LNGLRLQTKTIKV 122



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 92  VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
           +F+ NL    D   L+ +F  FG + + KV  D      KG+GFV     + A  AI  +
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347

Query: 150 NGMFLNYRKIFVGRFKSHKEREA 172
           NG  L  R + V  FK++K  ++
Sbjct: 348 NGYRLGDRVLQVS-FKTNKAHKS 369


>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
          Length = 366

 Score = 90.5 bits (223), Expect = 9e-19
 Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 4/151 (2%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +L V  L   +T+      F   G I S ++ RDKIT +SLGY +VNY  P DA++A+ T
Sbjct: 47  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
           LN   ++ + +++ +++  PS       N+++  L KT+  K L  +FS +G I++ ++ 
Sbjct: 107 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 164

Query: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
            D+     +G GF+ F K+  AE AI  +NG
Sbjct: 165 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 91  NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
           N+ +  L + +  +   ++F + G I SCK+  D+   +  GYGFV++   + AE+AI+ 
Sbjct: 47  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106

Query: 149 MNGMFLNYRKIFV 161
           +NG+ L  + I V
Sbjct: 107 LNGLRLQTKTIKV 119



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 92  VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
           +F+ NL    D   L+ +F  FG + + KV  D      KG+GFV     + A  AI  +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344

Query: 150 NGMFLNYRKIFVGRFKSHKEREA 172
           NG  L  R + V  FK++K  ++
Sbjct: 345 NGYRLGDRVLQVS-FKTNKAHKS 366


>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
          Length = 383

 Score = 90.5 bits (223), Expect = 9e-19
 Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 4/151 (2%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +L V  L   +T+      F   G I S ++ RDKIT +SLGY +VNY  P DA++A+ T
Sbjct: 64  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 123

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
           LN   ++ + +++ +++  PS       N+++  L KT+  K L  +FS +G I++ ++ 
Sbjct: 124 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 181

Query: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
            D+     +G GF+ F K+  AE AI  +NG
Sbjct: 182 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 212



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 91  NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
           N+ +  L + +  +   ++F + G I SCK+  D+   +  GYGFV++   + AE+AI+ 
Sbjct: 64  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 123

Query: 149 MNGMFLNYRKIFV 161
           +NG+ L  + I V
Sbjct: 124 LNGLRLQTKTIKV 136



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 92  VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
           +F+ NL    D   L+ +F  FG + + KV  D      KG+GFV     + A  AI  +
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361

Query: 150 NGMFLNYRKIFVGRFKSHKEREA 172
           NG  L  R + V  FK++K  ++
Sbjct: 362 NGYRLGDRVLQVS-FKTNKAHKS 383


>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
          Length = 366

 Score = 90.5 bits (223), Expect = 9e-19
 Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 4/151 (2%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +L V  L   +T+      F   G I S ++ RDKIT +SLGY +VNY  P DA++A+ T
Sbjct: 47  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
           LN   ++ + +++ +++  PS       N+++  L KT+  K L  +FS +G I++ ++ 
Sbjct: 107 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 164

Query: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
            D+     +G GF+ F K+  AE AI  +NG
Sbjct: 165 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 91  NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
           N+ +  L + +  +   ++F + G I SCK+  D+   +  GYGFV++   + AE+AI+ 
Sbjct: 47  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106

Query: 149 MNGMFLNYRKIFV 161
           +NG+ L  + I V
Sbjct: 107 LNGLRLQTKTIKV 119



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 92  VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
           +F+ NL    D   L+ +F  FG + + KV  D      KG+GFV     + A  AI  +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344

Query: 150 NGMFLNYRKIFVGRFKSHKEREA 172
           NG  L  R + V  FK++K  ++
Sbjct: 345 NGYRLGDRVLQVS-FKTNKAHKS 366


>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
          Length = 367

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 4/151 (2%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +L V  L   +T+      F   G I S ++ RDKIT +SLGY +VNY  P DA +A+ T
Sbjct: 40  NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
           LN   ++ + +++ +++  PS       N+++  L KT+  K +  +FS +G I++ ++ 
Sbjct: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157

Query: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
            D+     +G GF+ F K+  AE AI  +NG
Sbjct: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188



 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 92  VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
           +F+ NL    D   L+ +F  FG + + KV  D      KG+GFV     + A  AI  +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 150 NGMFLNYRKIFVGRFKSHKEREA 172
           NG  L  R + V  FK+ K+ +A
Sbjct: 346 NGYRLGERVLQVS-FKTSKQHKA 367



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 36/61 (59%)

Query: 4   LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
           ++V +L PE  E++L++ F P G + ++++ RD  T +  G+ +V      +A  A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 64  N 64
           N
Sbjct: 346 N 346



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 91  NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
           N+ +  L + +      ++F + G+I SCK+  D+   +  GYGFV++     A++AI+ 
Sbjct: 40  NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99

Query: 149 MNGMFLNYRKIFV 161
           +NG+ L  + I V
Sbjct: 100 LNGLKLQTKTIKV 112


>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
          Length = 360

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 4/151 (2%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +L V  L   +T+      F   G I S ++ RDKIT +SLGY +VNY  P DA +A+ T
Sbjct: 40  NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
           LN   ++ + +++ +++  PS       N+++  L KT+  K +  +FS +G I++ ++ 
Sbjct: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157

Query: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
            D+     +G GF+ F K+  AE AI  +NG
Sbjct: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188



 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 92  VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
           +F+ NL    D   L+ +F  FG + + KV  D      KG+GFV     + A  AI  +
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338

Query: 150 NGMFLNYRKIFVGRFKSHKEREA 172
           NG  L  R + V  FK+ K+ +A
Sbjct: 339 NGYRLGERVLQVS-FKTSKQHKA 360



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 36/61 (59%)

Query: 4   LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
           ++V +L PE  E++L++ F P G + ++++ RD  T +  G+ +V      +A  A+ +L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338

Query: 64  N 64
           N
Sbjct: 339 N 339



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 91  NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
           N+ +  L + +      ++F + G+I SCK+  D+   +  GYGFV++     A++AI+ 
Sbjct: 40  NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99

Query: 149 MNGMFLNYRKIFV 161
           +NG+ L  + I V
Sbjct: 100 LNGLKLQTKTIKV 112


>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
           sapiens]
          Length = 516

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 11/174 (6%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           M  +YVG ++ E+ E  + + F+P GPI SI +  D +T +  G+A+V Y+ P  A+ AL
Sbjct: 85  MCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLAL 144

Query: 61  ETLNFDVIKGRPVRI----MWSQRDPSL-----RKSGVGNVFIKNLGKTIDNKALYNIFS 111
           E +N  ++ GR +++       Q  P +            +++ ++ + + +  + ++F 
Sbjct: 145 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 204

Query: 112 AFGNILSCKVACDEK--GPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGR 163
           AFG I SC +A D      KGYGF+ ++K +S++ A+  MN   L  + + VG+
Sbjct: 205 AFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 258


>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
           sapiens]
          Length = 542

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 11/174 (6%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           M  +YVG ++ E+ E  + + F+P GPI SI +  D +T +  G+A+V Y+ P  A+ AL
Sbjct: 111 MCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLAL 170

Query: 61  ETLNFDVIKGRPVRI----MWSQRDPSL-----RKSGVGNVFIKNLGKTIDNKALYNIFS 111
           E +N  ++ GR +++       Q  P +            +++ ++ + + +  + ++F 
Sbjct: 171 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 230

Query: 112 AFGNILSCKVACDEK--GPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGR 163
           AFG I SC +A D      KGYGF+ ++K +S++ A+  MN   L  + + VG+
Sbjct: 231 AFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 284


>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
           sapiens]
          Length = 559

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 11/174 (6%)

Query: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
           M  +YVG ++ E+ E  + + F+P GPI SI +  D +T +  G+A+V Y+ P  A+ AL
Sbjct: 128 MCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLAL 187

Query: 61  ETLNFDVIKGRPVRI----MWSQRDPSL-----RKSGVGNVFIKNLGKTIDNKALYNIFS 111
           E +N  ++ GR +++       Q  P +            +++ ++ + + +  + ++F 
Sbjct: 188 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 247

Query: 112 AFGNILSCKVACDEK--GPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGR 163
           AFG I SC +A D      KGYGF+ ++K +S++ A+  MN   L  + + VG+
Sbjct: 248 AFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 301


>gi|38201714 ELAV-like 1 [Homo sapiens]
          Length = 326

 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 4/151 (2%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +L V  L   +T+  L   FS  G + S ++ RDK+   SLGY +VNY    DA+RA+ T
Sbjct: 21  NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
           LN   ++ + +++ +++  PS       N++I  L +T+  K + ++FS FG I++ +V 
Sbjct: 81  LNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138

Query: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
            D+     +G  F+ F K+  AE AI   NG
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 55/223 (24%)

Query: 2   ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
           A+LY+  L   +T+  + + FS  G I++ R+  D+ T  S G A++ + +  +A+ A+ 
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165

Query: 62  TLNFDVIKG--RPVRIMWSQRDPSLRK--------------------------------- 86
           + N     G   P+ + ++  +P+  K                                 
Sbjct: 166 SFNGHKPPGSSEPITVKFAA-NPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMG 224

Query: 87  -------SGV---GN------VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGP 128
                  SGV   GN      +FI NLG+  D   L+ +F  FG + + KV  D      
Sbjct: 225 VDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKC 284

Query: 129 KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE 171
           KG+GFV     E A  AI  +NG  L   KI    FK++K  +
Sbjct: 285 KGFGFVTMTNYEEAAMAIASLNGYRLG-DKILQVSFKTNKSHK 326



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 88  GVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERA 145
           G  N+ +  L + +    L ++FS+ G + S K+  D+      GYGFV++   + AERA
Sbjct: 18  GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77

Query: 146 IDVMNGMFLNYRKIFVGRFKSHKEREAERGAW----ARQSTSADVKD 188
           I+ +NG+ L  + I V   +   E   +   +     R  T  DV+D
Sbjct: 78  INTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVED 124


>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
          Length = 375

 Score = 81.3 bits (199), Expect = 5e-16
 Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 22/198 (11%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +LYVG+L  +VTEA++ + FS  GP  + ++  D  T  +  Y +V + +   A  AL  
Sbjct: 8   TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNKALYNIFSAFGNILSC 119
           +N   I G+ V++ W+   PS +K    N   VF+ +L   I  + +   F+ FG I   
Sbjct: 66  MNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124

Query: 120 KVACD--EKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
           +V  D      KGYGFV F  +  AE AI  M G +L  R+I              R  W
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI--------------RTNW 170

Query: 178 ARQSTSADVKDFEEDTDE 195
           A +   A    +E +T +
Sbjct: 171 ATRKPPAPKSTYESNTKQ 188



 Score = 78.6 bits (192), Expect = 3e-15
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 24/168 (14%)

Query: 4   LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
           ++VGDL PE+T   +   F+P G I   R+ +D  T +S GY +V++    DA+ A++ +
Sbjct: 97  VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156

Query: 64  NFDVIKGRPVRIMWSQRDPSLRKSGVGN--------------------VFIKNLGKTIDN 103
               + GR +R  W+ R P   KS   +                    V+   +   +  
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 216

Query: 104 KALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
           + +   FS FG I+  +V  D    KGY FV F   ESA  AI  +NG
Sbjct: 217 QLMRQTFSPFGQIMEIRVFPD----KGYSFVRFNSHESAAHAIVSVNG 260



 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           ++Y G +   +TE ++ + FSP G I+ IR+  DK      GY++V +     A  A+ +
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVS 257

Query: 63  LNFDVIKGRPVRIMWSQ 79
           +N   I+G  V+  W +
Sbjct: 258 VNGTTIEGHVVKCYWGK 274


>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
          Length = 392

 Score = 80.9 bits (198), Expect = 7e-16
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 24/168 (14%)

Query: 4   LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
           ++VGDL PE+T   +   F+P G I   R+ +D  T +S GY +V++   +DA+ A+  +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query: 64  NFDVIKGRPVRIMWSQRDPSLRKSGVGN--------------------VFIKNLGKTIDN 103
               + GR +R  W+ R P   KS   N                    V+   +   + +
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235

Query: 104 KALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
           + +   FS FG I+  +V  +    KGY FV F   ESA  AI  +NG
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNG 279



 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 21/177 (11%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLG---------------YAY 47
           +LYVG+L  +VTE ++ + FS  GP  S ++  ++   R +                Y +
Sbjct: 10  TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69

Query: 48  VNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNK 104
           V + +  DA  AL  +N   I G+ V++ W+   PS +K    N   VF+ +L   I  +
Sbjct: 70  VEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTE 128

Query: 105 ALYNIFSAFGNILSCKVACDEKG--PKGYGFVHFQKQESAERAIDVMNGMFLNYRKI 159
            + + F+ FG I   +V  D      KGYGFV F  +  AE AI  M G +L  R+I
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185



 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           ++Y G +   +T+ ++ + FSP G I+ IR+  +K      GY++V +     A  A+ +
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVS 276

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKS 87
           +N   I+G  V+  W +  P + K+
Sbjct: 277 VNGTTIEGHVVKCYWGKESPDMTKN 301


>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
          Length = 375

 Score = 80.9 bits (198), Expect = 7e-16
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 24/168 (14%)

Query: 4   LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
           ++VGDL PE+T   +   F+P G I   R+ +D  T +S GY +V++   +DA+ A+  +
Sbjct: 99  VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158

Query: 64  NFDVIKGRPVRIMWSQRDPSLRKSGVGN--------------------VFIKNLGKTIDN 103
               + GR +R  W+ R P   KS   N                    V+   +   + +
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218

Query: 104 KALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
           + +   FS FG I+  +V  +    KGY FV F   ESA  AI  +NG
Sbjct: 219 QLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNG 262



 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +LYVG+L  +VTE ++ + FS  GP  S ++  +  +     Y +V + +  DA  AL  
Sbjct: 10  TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA 67

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNKALYNIFSAFGNILSC 119
           +N   I G+ V++ W+   PS +K    N   VF+ +L   I  + + + F+ FG I   
Sbjct: 68  MNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126

Query: 120 KVACDEKG--PKGYGFVHFQKQESAERAIDVMNGMFLNYRKI 159
           +V  D      KGYGFV F  +  AE AI  M G +L  R+I
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 168



 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           ++Y G +   +T+ ++ + FSP G I+ IR+  +K      GY++V +     A  A+ +
Sbjct: 206 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVS 259

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKS 87
           +N   I+G  V+  W +  P + K+
Sbjct: 260 VNGTTIEGHVVKCYWGKESPDMTKN 284


>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
          Length = 386

 Score = 78.6 bits (192), Expect = 3e-15
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 24/168 (14%)

Query: 4   LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
           ++VGDL PE+T   +   F+P G I   R+ +D  T +S GY +V++    DA+ A++ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167

Query: 64  NFDVIKGRPVRIMWSQRDPSLRKSGVGN--------------------VFIKNLGKTIDN 103
               + GR +R  W+ R P   KS   +                    V+   +   +  
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227

Query: 104 KALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
           + +   FS FG I+  +V  D    KGY FV F   ESA  AI  +NG
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPD----KGYSFVRFNSHESAAHAIVSVNG 271



 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 59/208 (28%), Positives = 92/208 (44%), Gaps = 31/208 (14%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +LYVG+L  +VTEA++ + FS  GP  + ++  D  T  +  Y +V + +   A  AL  
Sbjct: 8   TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVG-------------NVFIKNLGKTIDNKALYNI 109
           +N   I G+ V++ W+    S +K                 +VF+ +L   I  + +   
Sbjct: 66  MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125

Query: 110 FSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSH 167
           F+ FG I   +V  D      KGYGFV F  +  AE AI  M G +L  R+I        
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI-------- 177

Query: 168 KEREAERGAWARQSTSADVKDFEEDTDE 195
                 R  WA +   A    +E +T +
Sbjct: 178 ------RTNWATRKPPAPKSTYESNTKQ 199



 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           ++Y G +   +TE ++ + FSP G I+ IR+  DK      GY++V +     A  A+ +
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVS 268

Query: 63  LNFDVIKGRPVRIMWSQ 79
           +N   I+G  V+  W +
Sbjct: 269 VNGTTIEGHVVKCYWGK 285


>gi|4506447 RNA binding motif, single stranded interacting protein 1
           isoform c [Homo sapiens]
          Length = 403

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 10/153 (6%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +LY+  L P  T+  L +   P G I+S +   DK T +  GY +V++  P  A++A+  
Sbjct: 63  NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 122

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
           L    ++ +  +    ++DP+       N++I NL  ++D + L N+   FG ++S ++ 
Sbjct: 123 LKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRIL 173

Query: 123 CDEKG-PKGYGFVHFQKQESAERAIDVMNGMFL 154
            D  G  +G GF   +  E  E  I   NG F+
Sbjct: 174 RDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206


>gi|8400718 RNA binding motif, single stranded interacting protein 1
           isoform a [Homo sapiens]
          Length = 406

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 10/153 (6%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +LY+  L P  T+  L +   P G I+S +   DK T +  GY +V++  P  A++A+  
Sbjct: 63  NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 122

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
           L    ++ +  +    ++DP+       N++I NL  ++D + L N+   FG ++S ++ 
Sbjct: 123 LKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRIL 173

Query: 123 CDEKG-PKGYGFVHFQKQESAERAIDVMNGMFL 154
            D  G  +G GF   +  E  E  I   NG F+
Sbjct: 174 RDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206


>gi|51317355 RNA binding motif, single stranded interacting protein
           3 isoform 1 [Homo sapiens]
          Length = 437

 Score = 73.9 bits (180), Expect = 8e-14
 Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 10/153 (6%)

Query: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
           +LY+  L P  T+  L +   P G I+S +   DK T +  GY +V++  P  A++A+ +
Sbjct: 62  NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121

Query: 63  LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
           L  + ++ +  +    ++DP+       N++I NL  ++D + L N+   FG+++S ++ 
Sbjct: 122 LKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRIL 172

Query: 123 CDEKG-PKGYGFVHFQKQESAERAIDVMNGMFL 154
            D  G  +G GF   +  E  E  I   NG +L
Sbjct: 173 RDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,201,125
Number of Sequences: 37866
Number of extensions: 285991
Number of successful extensions: 1466
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 500
length of query: 200
length of database: 18,247,518
effective HSP length: 97
effective length of query: 103
effective length of database: 14,574,516
effective search space: 1501175148
effective search space used: 1501175148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.