Guide to the Human Genome
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Name: THBS3 Sequence: fasta or formatted (956aa) NCBI GI: 6005902
Description:

thrombospondin 3 precursor

Referenced in:

Platelets and Megakaryocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         52           1
 C cysteine            5.0         48           1
 D aspartate          10.8        103           3
 E glutamate           4.3         41           1
 F phenylalanine       3.0         29           2
 G glycine             9.7         93           2
 H histidine           2.4         23           1
 I isoleucine          3.2         31           2
 K lysine              2.6         25           1
 L leucine             7.9         76           4
 M methionine          1.6         15           1
 N asparagine          6.3         60           2
 P proline             6.2         59           2
 Q glutamine           5.9         56           2
 R arginine            4.7         45           2
 S serine              5.2         50           2
 T threonine           5.1         49           1
 V valine              7.2         69           2
 W tryptophan          1.0         10           1
 Y tyrosine            2.3         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thrombospondin 3 precursor 
THBS4                 0.597   thrombospondin 4 precursor 
COMP                  0.508   cartilage oligomeric matrix protein precursor 
THBS1                 0.356   thrombospondin 1 precursor 
THBS2                 0.335   thrombospondin 2 precursor 
CUBN                  0.038   cubilin 
FBLN1                 0.035   fibulin 1 isoform B precursor 
FBLN1                 0.035   fibulin 1 isoform A precursor 
FBLN1                 0.035   fibulin 1 isoform D 
FBLN1                 0.035   fibulin 1 isoform C precursor 
FBN1                  0.033   fibrillin 1 precursor 
LTBP1                 0.031   latent transforming growth factor beta binding prote...
LTBP1                 0.031   latent transforming growth factor beta binding prote...
HMCN1                 0.029   hemicentin 1 
FBN2                  0.028   fibrillin 2 precursor 
NOTCH2                0.027   notch 2 preproprotein 
DLL1                  0.026   delta-like 1 
LTBP3                 0.026   latent transforming growth factor beta binding prot...
LTBP3                 0.026   latent transforming growth factor beta binding prote...
STAB1                 0.026   stabilin 1 precursor 
CD93                  0.026   CD93 antigen precursor 
STAB2                 0.026   stabilin 2 precursor 
NOTCH3                0.026   Notch homolog 3 
SCUBE2                0.026   CEGP1 protein 
FBN3                  0.026   fibrillin 3 precursor 
LTBP4                 0.026   latent transforming growth factor beta binding prot...
LTBP4                 0.026   latent transforming growth factor beta binding prot...
LTBP4                 0.026   latent transforming growth factor beta binding prot...
NOTCH1                0.025   notch1 preproprotein 
FBLN2                 0.025   fibulin 2 isoform b precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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